Information for 9-AGTAGATTGT (Motif 28)


Reverse Opposite:

p-value:1e-3
log p-value:-8.524e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif25.00%
Number of Background Sequences with motif4.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets189.0 +/- 0.0bp
Average Position of motif in Background91.8 +/- 59.7bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MF0011.1_HMG_class/Jaspar

Match Rank:1
Score:0.65
Offset:5
Orientation:forward strand
Alignment:AGTAGATTGT-
-----ATTGTT

MA0087.1_Sox5/Jaspar

Match Rank:2
Score:0.65
Offset:5
Orientation:forward strand
Alignment:AGTAGATTGT--
-----ATTGTTA

MA0084.1_SRY/Jaspar

Match Rank:3
Score:0.64
Offset:5
Orientation:reverse strand
Alignment:AGTAGATTGT----
-----ATTGTTTAN

MA0078.1_Sox17/Jaspar

Match Rank:4
Score:0.64
Offset:2
Orientation:forward strand
Alignment:AGTAGATTGT-
--CTCATTGTC

MA0479.1_FOXH1/Jaspar

Match Rank:5
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:AGTAGATTGT-
TGTGGATTNNN

PB0070.1_Sox30_1/Jaspar

Match Rank:6
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-AGTAGATTGT-----
ANNTCCATTGTTCNNN

Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--AGTAGATTGT
NNTGTGGATTSS

PB0063.1_Sox13_1/Jaspar

Match Rank:8
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:AGTAGATTGT------
AANTTATTGTTCTNNA

PB0173.1_Sox21_2/Jaspar

Match Rank:9
Score:0.62
Offset:0
Orientation:forward strand
Alignment:AGTAGATTGT-------
AATCAATTGTTCCGCTA

PB0165.1_Sox11_2/Jaspar

Match Rank:10
Score:0.62
Offset:2
Orientation:forward strand
Alignment:AGTAGATTGT------
--AAAATTGTTATGAA