Information for 16-CAAATTCTATGA (Motif 18)


Reverse Opposite:

p-value:1e-4
log p-value:-9.911e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif25.00%
Number of Background Sequences with motif1.5
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets176.0 +/- 0.0bp
Average Position of motif in Background36.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0005.1_Bbx_1/Jaspar

Match Rank:1
Score:0.65
Offset:1
Orientation:forward strand
Alignment:CAAATTCTATGA----
-TAATTCAATGAAGTG

PH0068.1_Hoxc13/Jaspar

Match Rank:2
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:CAAATTCTATGA-----
-NAATTTTACGAGNTNN

PH0012.1_Cdx1/Jaspar

Match Rank:3
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:CAAATTCTATGA-----
-NAATTTTATTACCTNN

PH0048.1_Hoxa13/Jaspar

Match Rank:4
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:CAAATTCTATGA-----
-ANATTTTACGAGNNNN

PB0177.1_Sox7_2/Jaspar

Match Rank:5
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---CAAATTCTATGA-------
GTGCTAATTGTGTGTGTACGCT

STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer

Match Rank:6
Score:0.58
Offset:2
Orientation:forward strand
Alignment:CAAATTCTATGA--
--NTTTCTNAGAAA

PH0013.1_Cdx2/Jaspar

Match Rank:7
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:CAAATTCTATGA-----
-NAATTTTATTACCNNN

PB0135.1_Hoxa3_2/Jaspar

Match Rank:8
Score:0.58
Offset:1
Orientation:forward strand
Alignment:CAAATTCTATGA---
-AAAAACCATTAAGG

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:9
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:CAAATTCTATGA-
---NTTTTATGAC

Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer

Match Rank:10
Score:0.57
Offset:0
Orientation:forward strand
Alignment:CAAATTCTATGA
YTAATYNRATTA