Information for 13-GCAAAGAGGTTT (Motif 15)


Reverse Opposite:

p-value:1e-4
log p-value:-9.911e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif25.00%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets134.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0467.1_Crx/Jaspar

Match Rank:1
Score:0.60
Offset:3
Orientation:forward strand
Alignment:GCAAAGAGGTTT--
---AAGAGGATTAG

MA0480.1_Foxo1/Jaspar

Match Rank:2
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-GCAAAGAGGTTT
TGTAAACAGGA--

PH0126.1_Obox6/Jaspar

Match Rank:3
Score:0.51
Offset:1
Orientation:forward strand
Alignment:GCAAAGAGGTTT----
-AAAAACGGATTATTG

IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer

Match Rank:4
Score:0.51
Offset:6
Orientation:reverse strand
Alignment:GCAAAGAGGTTT----
------TGGTTTCAGT

PH0152.1_Pou6f1_2/Jaspar

Match Rank:5
Score:0.51
Offset:-4
Orientation:forward strand
Alignment:----GCAAAGAGGTTT-
AAACATAATGAGGTTGC

Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan et al.)/Homer

Match Rank:6
Score:0.51
Offset:0
Orientation:reverse strand
Alignment:GCAAAGAGGTTT
GTAAACAG----

Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer

Match Rank:7
Score:0.51
Offset:-8
Orientation:forward strand
Alignment:--------GCAAAGAGGTTT
NNNVCTGWGYAAACASN---

PH0004.1_Nkx3-2/Jaspar

Match Rank:8
Score:0.50
Offset:-3
Orientation:reverse strand
Alignment:---GCAAAGAGGTTT--
NTNNTTAAGTGGTTANN

PH0113.1_Nkx2-4/Jaspar

Match Rank:9
Score:0.50
Offset:-3
Orientation:reverse strand
Alignment:---GCAAAGAGGTTT-
AATTTCAAGTGGCTTN

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:10
Score:0.50
Offset:-3
Orientation:reverse strand
Alignment:---GCAAAGAGGTTT
GGAACAAAGR-----