Information for 12-AGAATGTATAAG (Motif 14)


Reverse Opposite:

p-value:1e-4
log p-value:-9.911e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif25.00%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets122.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:1
Score:0.63
Offset:3
Orientation:forward strand
Alignment:AGAATGTATAAG-
---ATGMATATDC

MA0090.1_TEAD1/Jaspar

Match Rank:2
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----AGAATGTATAAG
CNGAGGAATGTG----

PB0028.1_Hbp1_1/Jaspar

Match Rank:3
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----AGAATGTATAAG
ACTATGAATGAATGAT

PH0148.1_Pou3f3/Jaspar

Match Rank:4
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--AGAATGTATAAG---
AAAATATGCATAATAAA

Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:5
Score:0.55
Offset:3
Orientation:forward strand
Alignment:AGAATGTATAAG---
---ATGCATAATTCA

TATA-Box(TBP)/Promoter/Homer

Match Rank:6
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:AGAATGTATAAG-
-GNCTATAAAAGG

MA0032.1_FOXC1/Jaspar

Match Rank:7
Score:0.54
Offset:0
Orientation:forward strand
Alignment:AGAATGTATAAG
GGTAAGTA----

TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer

Match Rank:8
Score:0.53
Offset:-3
Orientation:forward strand
Alignment:---AGAATGTATAAG
CCWGGAATGY-----

TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer

Match Rank:9
Score:0.53
Offset:-3
Orientation:forward strand
Alignment:---AGAATGTATAAG
CCWGGAATGY-----

MA0033.1_FOXL1/Jaspar

Match Rank:10
Score:0.52
Offset:2
Orientation:forward strand
Alignment:AGAATGTATAAG
--TATACATA--