Information for 1-TCTTCACGTA (Motif 1)


Reverse Opposite:

p-value:1e-4
log p-value:-9.911e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif25.00%
Number of Background Sequences with motif1.6
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets100.0 +/- 44.9bp
Average Position of motif in Background53.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)3.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer

Match Rank:1
Score:0.74
Offset:3
Orientation:forward strand
Alignment:TCTTCACGTA---
---GCACGTACCC

HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer

Match Rank:2
Score:0.72
Offset:2
Orientation:reverse strand
Alignment:TCTTCACGTA
--BGCACGTA

HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer

Match Rank:3
Score:0.71
Offset:3
Orientation:reverse strand
Alignment:TCTTCACGTA-
---GCACGTAY

MA0259.1_HIF1A::ARNT/Jaspar

Match Rank:4
Score:0.67
Offset:3
Orientation:reverse strand
Alignment:TCTTCACGTA-
---GCACGTNC

MA0004.1_Arnt/Jaspar

Match Rank:5
Score:0.62
Offset:4
Orientation:reverse strand
Alignment:TCTTCACGTA
----CACGTG

USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer

Match Rank:6
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:TCTTCACGTA---
---TCACGTGACC

CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer

Match Rank:7
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:TCTTCACGTA--
----CACGTGDC

MF0002.1_bZIP_CREB/G-box-like_subclass/Jaspar

Match Rank:8
Score:0.60
Offset:3
Orientation:forward strand
Alignment:TCTTCACGTA
---TGACGT-

POL008.1_DCE_S_I/Jaspar

Match Rank:9
Score:0.60
Offset:0
Orientation:forward strand
Alignment:TCTTCACGTA
GCTTCC----

bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.59
Offset:3
Orientation:forward strand
Alignment:TCTTCACGTA---
---KCACGTGMCN