Information for 3-TGACAGNN (Motif 2)


Reverse Opposite:

p-value:1e-123
log p-value:-2.841e+02
Information Content per bp:1.701
Number of Target Sequences with motif260.0
Percentage of Target Sequences with motif26.83%
Number of Background Sequences with motif1987.3
Percentage of Background Sequences with motif4.40%
Average Position of motif in Targets25.3 +/- 7.1bp
Average Position of motif in Background22.1 +/- 15.4bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:1
Score:0.93
Offset:-2
Orientation:reverse strand
Alignment:--TGACAGNN
VBTGWCAGCB

MA0498.1_Meis1/Jaspar

Match Rank:2
Score:0.92
Offset:-7
Orientation:reverse strand
Alignment:-------TGACAGNN
NNNTGAGTGACAGCT

PH0141.1_Pknox2/Jaspar

Match Rank:3
Score:0.89
Offset:-4
Orientation:reverse strand
Alignment:----TGACAGNN----
NNATTGACAGGTGCTT

PH0169.1_Tgif1/Jaspar

Match Rank:4
Score:0.88
Offset:-5
Orientation:forward strand
Alignment:-----TGACAGNN----
GATATTGACAGCTGCGT

PH0105.1_Meis3/Jaspar

Match Rank:5
Score:0.87
Offset:-4
Orientation:reverse strand
Alignment:----TGACAGNN----
GTATTGACAGGTNNTT

PH0102.1_Meis1/Jaspar

Match Rank:6
Score:0.85
Offset:-4
Orientation:reverse strand
Alignment:----TGACAGNN----
NTATTGACAGCTNNTT

PH0104.1_Meis2/Jaspar

Match Rank:7
Score:0.85
Offset:-4
Orientation:reverse strand
Alignment:----TGACAGNN----
NTATTGACAGGTNNTN

PH0140.1_Pknox1/Jaspar

Match Rank:8
Score:0.84
Offset:-4
Orientation:reverse strand
Alignment:----TGACAGNN----
GGATTGACAGGTCNTT

PH0170.1_Tgif2/Jaspar

Match Rank:9
Score:0.84
Offset:-4
Orientation:reverse strand
Alignment:----TGACAGNN----
GTATTGACAGCTNNTT

Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer

Match Rank:10
Score:0.81
Offset:-5
Orientation:forward strand
Alignment:-----TGACAGNN
GGTGYTGACAGS-