Information for 5-CGCTCA (Motif 14)


Reverse Opposite:

p-value:1e-4
log p-value:-9.808e+00
Information Content per bp:1.530
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.45%
Number of Background Sequences with motif162.7
Percentage of Background Sequences with motif0.36%
Average Position of motif in Targets29.8 +/- 12.1bp
Average Position of motif in Background22.0 +/- 10.0bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0503.1_Nkx2-5_(var.2)/Jaspar

Match Rank:1
Score:0.73
Offset:-3
Orientation:forward strand
Alignment:---CGCTCA--
AGCCACTCAAG

POL010.1_DCE_S_III/Jaspar

Match Rank:2
Score:0.73
Offset:0
Orientation:reverse strand
Alignment:CGCTCA
NGCTN-

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:3
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---CGCTCA-
AASCACTCAA

PB0199.1_Zfp161_2/Jaspar

Match Rank:4
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--CGCTCA------
GCCGCGCAGTGCGT

POL013.1_MED-1/Jaspar

Match Rank:5
Score:0.64
Offset:1
Orientation:forward strand
Alignment:CGCTCA-
-GCTCCG

MA0117.1_Mafb/Jaspar

Match Rank:6
Score:0.62
Offset:1
Orientation:forward strand
Alignment:CGCTCA---
-GCTGACGC

Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer

Match Rank:7
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--CGCTCA----
YCCGCCCACGCN

POL002.1_INR/Jaspar

Match Rank:8
Score:0.60
Offset:3
Orientation:forward strand
Alignment:CGCTCA-----
---TCAGTCTT

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:9
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--CGCTCA--
RSCACTYRAG

PB0143.1_Klf7_2/Jaspar

Match Rank:10
Score:0.60
Offset:-7
Orientation:forward strand
Alignment:-------CGCTCA----
AAGCATACGCCCAACTT