Information for 12-CCTGCTCRTCCC (Motif 11)


Reverse Opposite:

p-value:1e-10
log p-value:-2.487e+01
Information Content per bp:1.818
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.60%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets22.8 +/- 13.6bp
Average Position of motif in Background29.3 +/- 5.4bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---CCTGCTCRTCCC
CCCCCTGCTGTG---

PH0139.1_Pitx3/Jaspar

Match Rank:2
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-CCTGCTCRTCCC---
GNNAGCTAATCCCCCN

MA0145.2_Tcfcp2l1/Jaspar

Match Rank:3
Score:0.58
Offset:0
Orientation:forward strand
Alignment:CCTGCTCRTCCC--
CCAGTTCAAACCAG

PB0207.1_Zic3_2/Jaspar

Match Rank:4
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---CCTGCTCRTCCC
NNTCCTGCTGTGNNN

PB0206.1_Zic2_2/Jaspar

Match Rank:5
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---CCTGCTCRTCCC
TCNCCTGCTGNGNNN

PB0205.1_Zic1_2/Jaspar

Match Rank:6
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---CCTGCTCRTCCC
TNTCCTGCTGTGNNG

SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer

Match Rank:7
Score:0.55
Offset:-4
Orientation:forward strand
Alignment:----CCTGCTCRTCCC
ACATCCTGNT------

MA0461.1_Atoh1/Jaspar

Match Rank:8
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-CCTGCTCRTCCC
GCCATCTG-----

E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:9
Score:0.55
Offset:-4
Orientation:forward strand
Alignment:----CCTGCTCRTCCC
NNCACCTGNN------

POL010.1_DCE_S_III/Jaspar

Match Rank:10
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:CCTGCTCRTCCC
--NGCTN-----