ID	chrom	start	end	num.mark	seg.median.logR	copy.number	call	subclone.status
NaomicfDNA2_S3_R1.dedup.filt.bam.1Mb	1	1000001	120000000	119	-0.0257232525790503	2	NEUT	0
NaomicfDNA2_S3_R1.dedup.filt.bam.1Mb	1	150000001	248000000	98	0.957901898213922	4	AMP	0
NaomicfDNA2_S3_R1.dedup.filt.bam.1Mb	2	1000001	243000000	242	-0.00509559888441984	2	NEUT	0
NaomicfDNA2_S3_R1.dedup.filt.bam.1Mb	3	1000001	197000000	196	0.00264446000994957	2	NEUT	0
NaomicfDNA2_S3_R1.dedup.filt.bam.1Mb	4	2000001	191000000	189	-0.00361827916254952	2	NEUT	0
NaomicfDNA2_S3_R1.dedup.filt.bam.1Mb	5	1000001	26000000	25	0.352888977781604	3	GAIN	1
NaomicfDNA2_S3_R1.dedup.filt.bam.1Mb	5	26000001	34000000	8	0.629571918113371	3	GAIN	0
NaomicfDNA2_S3_R1.dedup.filt.bam.1Mb	5	35000001	53000000	18	0.943743289082638	4	AMP	0
NaomicfDNA2_S3_R1.dedup.filt.bam.1Mb	5	53000001	180000000	127	-0.0173570640369351	2	NEUT	0
NaomicfDNA2_S3_R1.dedup.filt.bam.1Mb	6	1000001	170000000	169	0.0124230469970947	2	NEUT	0
NaomicfDNA2_S3_R1.dedup.filt.bam.1Mb	7	1000001	56000000	55	-0.00726252683583506	2	NEUT	0
NaomicfDNA2_S3_R1.dedup.filt.bam.1Mb	7	67000001	125000000	58	-0.360793503910635	1	HETD	1
NaomicfDNA2_S3_R1.dedup.filt.bam.1Mb	7	125000001	159000000	34	-0.0268514401010253	2	NEUT	0
NaomicfDNA2_S3_R1.dedup.filt.bam.1Mb	8	1000001	43000000	42	-0.0360240951709974	2	NEUT	0
NaomicfDNA2_S3_R1.dedup.filt.bam.1Mb	8	47000001	69000000	22	0.581170942186587	3	GAIN	0
NaomicfDNA2_S3_R1.dedup.filt.bam.1Mb	8	69000001	145000000	76	1.27112253315124	5	HLAMP	0
NaomicfDNA2_S3_R1.dedup.filt.bam.1Mb	9	1000001	32000000	31	-1.01275027827844	1	HETD	0
NaomicfDNA2_S3_R1.dedup.filt.bam.1Mb	9	32000001	141000000	109	0.343414799448086	3	GAIN	1
NaomicfDNA2_S3_R1.dedup.filt.bam.1Mb	10	1000001	135000000	134	-0.0414385296594536	2	NEUT	0
NaomicfDNA2_S3_R1.dedup.filt.bam.1Mb	11	2000001	134000000	132	-0.0261459622260307	2	NEUT	0
NaomicfDNA2_S3_R1.dedup.filt.bam.1Mb	12	1000001	34000000	33	-0.967130818390489	1	HETD	0
NaomicfDNA2_S3_R1.dedup.filt.bam.1Mb	12	38000001	132000000	94	0.301005336026114	3	GAIN	1
NaomicfDNA2_S3_R1.dedup.filt.bam.1Mb	13	20000001	55000000	35	-0.0389094852527754	2	NEUT	0
NaomicfDNA2_S3_R1.dedup.filt.bam.1Mb	13	55000001	114000000	59	0.568889279303499	3	GAIN	0
NaomicfDNA2_S3_R1.dedup.filt.bam.1Mb	14	21000001	106000000	85	0.504960576651628	3	GAIN	0
NaomicfDNA2_S3_R1.dedup.filt.bam.1Mb	15	25000001	102000000	77	-0.0396178485178519	2	NEUT	0
NaomicfDNA2_S3_R1.dedup.filt.bam.1Mb	16	1000001	90000000	89	-0.0707223535994178	2	NEUT	0
NaomicfDNA2_S3_R1.dedup.filt.bam.1Mb	17	1000001	81000000	80	-0.0272885766984148	2	NEUT	0
NaomicfDNA2_S3_R1.dedup.filt.bam.1Mb	18	1000001	26000000	25	0.548642497099664	3	GAIN	0
NaomicfDNA2_S3_R1.dedup.filt.bam.1Mb	18	26000001	78000000	52	-1.01514515204631	1	HETD	0
NaomicfDNA2_S3_R1.dedup.filt.bam.1Mb	19	1000001	6000000	5	0.304773655472916	3	GAIN	1
NaomicfDNA2_S3_R1.dedup.filt.bam.1Mb	19	6000001	59000000	53	0.512126442919723	3	GAIN	0
NaomicfDNA2_S3_R1.dedup.filt.bam.1Mb	20	1000001	19000000	18	-0.0167972983610701	2	NEUT	0
NaomicfDNA2_S3_R1.dedup.filt.bam.1Mb	20	19000001	61000000	42	0.526195604958473	3	GAIN	0
NaomicfDNA2_S3_R1.dedup.filt.bam.1Mb	21	16000001	20000000	4	-0.0599468643390181	2	NEUT	0
NaomicfDNA2_S3_R1.dedup.filt.bam.1Mb	21	20000001	26000000	6	-0.315315428136692	1	HETD	1
NaomicfDNA2_S3_R1.dedup.filt.bam.1Mb	21	26000001	48000000	22	-0.0505361645872994	2	NEUT	0
NaomicfDNA2_S3_R1.dedup.filt.bam.1Mb	22	22000001	50000000	28	-0.0745065426916696	2	NEUT	0
NaomicfDNA2_S3_R1.dedup.filt.bam.1Mb	X	4000001	43000000	39	-0.0673493325938195	2	NEUT	0
NaomicfDNA2_S3_R1.dedup.filt.bam.1Mb	X	43000001	55000000	12	0.504312806578269	3	GAIN	0
NaomicfDNA2_S3_R1.dedup.filt.bam.1Mb	X	57000001	79000000	22	0.0384492655347319	2	NEUT	0
NaomicfDNA2_S3_R1.dedup.filt.bam.1Mb	X	79000001	151000000	72	0.575126049965263	3	GAIN	0