Sample	Tumor Fraction	Ploidy
NaomicfDNA2_S3_R1.dedup.filt.bam.1Mb	0.9703	2.027


NaomicfDNA2_S3_R1.dedup.filt.bam.1Mb
Gender:	female
Tumor Fraction:	0.9703
Ploidy:	2.027
Subclone Fraction:	0.5253
Fraction Genome Subclonal:	0.09792
Fraction CNA Subclonal:	0.2841
Coverage:	NA
ChrY coverage fraction:	0.0004245
ChrX median log ratio:	0.4758
Student's t mean: -0.68, -0.013, 0.38, 0.67, 0.89, -0.31, 0.21
Student's t precision: 320, 720, 410, 420, 350, 190, 560
Gamma Rate Init:	0.025
GC-Map correction MAD:	0.05691


init	n_est	phi_est	BIC	Frac_genome_subclonal	Frac_CNA_subclonal	loglik
n0.5-p2	0.03	2.027	NA	0.098	0.28	3352
n0.5-p3	0.33	3.037	NA	0.0039	0.0039	2338
n0.6-p2	0.28	2.036	NA	0.078	0.23	2805
n0.6-p3	0.32	2.98	NA	0.35	0.36	2615
n0.7-p2	0.51	2.047	NA	0.055	0.16	2898
n0.7-p3	0.28	2.989	NA	0.39	0.4	2601
n0.8-p2	0.51	2.047	NA	0.055	0.16	2898
n0.8-p3	0.28	2.99	NA	0.39	0.4	2601
n0.9-p2	0.51	2.047	NA	0.055	0.16	2898
n0.9-p3	0.51	2.047	NA	0.055	0.16	2898