ID	chrom	start	end	num.mark	seg.median.logR	copy.number	call	subclone.status
NaomicfDNA4_S3_R1.dedup.filt.bam.1Mb	1	1000001	120000000	119	-0.0300874050777393	2	NEUT	0
NaomicfDNA4_S3_R1.dedup.filt.bam.1Mb	1	150000001	248000000	98	0.902757765666024	4	AMP	0
NaomicfDNA4_S3_R1.dedup.filt.bam.1Mb	2	1000001	243000000	242	-0.00503212030262069	2	NEUT	0
NaomicfDNA4_S3_R1.dedup.filt.bam.1Mb	3	1000001	197000000	196	-0.00870377918168311	2	NEUT	0
NaomicfDNA4_S3_R1.dedup.filt.bam.1Mb	4	2000001	191000000	189	-0.0107682757851952	2	NEUT	0
NaomicfDNA4_S3_R1.dedup.filt.bam.1Mb	5	1000001	26000000	25	0.338017677300121	3	GAIN	1
NaomicfDNA4_S3_R1.dedup.filt.bam.1Mb	5	26000001	34000000	8	0.603818368938462	3	GAIN	0
NaomicfDNA4_S3_R1.dedup.filt.bam.1Mb	5	35000001	53000000	18	0.927859216682451	4	AMP	0
NaomicfDNA4_S3_R1.dedup.filt.bam.1Mb	5	53000001	180000000	127	-0.00777035549022796	2	NEUT	0
NaomicfDNA4_S3_R1.dedup.filt.bam.1Mb	6	1000001	170000000	169	0.00691050924585806	2	NEUT	0
NaomicfDNA4_S3_R1.dedup.filt.bam.1Mb	7	1000001	56000000	55	-0.012499509834262	2	NEUT	0
NaomicfDNA4_S3_R1.dedup.filt.bam.1Mb	7	67000001	125000000	58	-0.316374366296704	1	HETD	1
NaomicfDNA4_S3_R1.dedup.filt.bam.1Mb	7	125000001	159000000	34	-0.0369921435434339	2	NEUT	0
NaomicfDNA4_S3_R1.dedup.filt.bam.1Mb	8	1000001	43000000	42	-0.0516657948043155	2	NEUT	0
NaomicfDNA4_S3_R1.dedup.filt.bam.1Mb	8	47000001	69000000	22	0.551998205764772	3	GAIN	0
NaomicfDNA4_S3_R1.dedup.filt.bam.1Mb	8	69000001	145000000	76	1.22906941540437	5	HLAMP	0
NaomicfDNA4_S3_R1.dedup.filt.bam.1Mb	9	1000001	32000000	31	-0.970431704644043	1	HETD	0
NaomicfDNA4_S3_R1.dedup.filt.bam.1Mb	9	32000001	141000000	109	0.297741959843624	3	GAIN	1
NaomicfDNA4_S3_R1.dedup.filt.bam.1Mb	10	1000001	135000000	134	-0.0532253481435165	2	NEUT	0
NaomicfDNA4_S3_R1.dedup.filt.bam.1Mb	11	2000001	134000000	132	-0.0143721279973358	2	NEUT	0
NaomicfDNA4_S3_R1.dedup.filt.bam.1Mb	12	1000001	34000000	33	-0.907090178873813	1	HETD	0
NaomicfDNA4_S3_R1.dedup.filt.bam.1Mb	12	38000001	132000000	94	0.268482661719354	3	GAIN	1
NaomicfDNA4_S3_R1.dedup.filt.bam.1Mb	13	20000001	55000000	35	-0.061352049308844	2	NEUT	0
NaomicfDNA4_S3_R1.dedup.filt.bam.1Mb	13	55000001	114000000	59	0.523737252608798	3	GAIN	0
NaomicfDNA4_S3_R1.dedup.filt.bam.1Mb	14	21000001	106000000	85	0.489584332905833	3	GAIN	0
NaomicfDNA4_S3_R1.dedup.filt.bam.1Mb	15	25000001	102000000	77	-0.0455805071218459	2	NEUT	0
NaomicfDNA4_S3_R1.dedup.filt.bam.1Mb	16	1000001	90000000	89	-0.0740030421223994	2	NEUT	0
NaomicfDNA4_S3_R1.dedup.filt.bam.1Mb	17	1000001	81000000	80	-0.039043655891578	2	NEUT	0
NaomicfDNA4_S3_R1.dedup.filt.bam.1Mb	18	1000001	26000000	25	0.491220349082201	3	GAIN	0
NaomicfDNA4_S3_R1.dedup.filt.bam.1Mb	18	26000001	78000000	52	-0.955906650972373	1	HETD	0
NaomicfDNA4_S3_R1.dedup.filt.bam.1Mb	19	1000001	6000000	5	0.264607582839527	3	GAIN	1
NaomicfDNA4_S3_R1.dedup.filt.bam.1Mb	19	6000001	59000000	53	0.481857258266832	3	GAIN	0
NaomicfDNA4_S3_R1.dedup.filt.bam.1Mb	20	1000001	19000000	18	-0.0220847756859283	2	NEUT	0
NaomicfDNA4_S3_R1.dedup.filt.bam.1Mb	20	19000001	61000000	42	0.494141806540002	3	GAIN	0
NaomicfDNA4_S3_R1.dedup.filt.bam.1Mb	21	16000001	48000000	32	-0.0886492821775042	2	NEUT	0
NaomicfDNA4_S3_R1.dedup.filt.bam.1Mb	22	22000001	50000000	28	-0.0816853932151331	2	NEUT	0
NaomicfDNA4_S3_R1.dedup.filt.bam.1Mb	X	4000001	43000000	39	-0.0854147598958311	2	NEUT	0
NaomicfDNA4_S3_R1.dedup.filt.bam.1Mb	X	43000001	55000000	12	0.465902493809641	3	GAIN	0
NaomicfDNA4_S3_R1.dedup.filt.bam.1Mb	X	57000001	79000000	22	0.0620733968292886	2	NEUT	0
NaomicfDNA4_S3_R1.dedup.filt.bam.1Mb	X	79000001	151000000	72	0.575177986986735	3	GAIN	0