ID	chrom	start	end	num.mark	seg.median.logR	copy.number	call	subclone.status
NaomicfDNA2_S2_R1.dedup.filt.bam.500Kb	1	1000001	120500000	239	-0.031339664373231	2	NEUT	0
NaomicfDNA2_S2_R1.dedup.filt.bam.500Kb	1	146500001	248500000	204	0.959247932687072	5	HLAMP	0
NaomicfDNA2_S2_R1.dedup.filt.bam.500Kb	2	500001	243000000	485	-0.00947273563847695	2	NEUT	0
NaomicfDNA2_S2_R1.dedup.filt.bam.500Kb	3	500001	197500000	394	-0.00428047618631757	2	NEUT	0
NaomicfDNA2_S2_R1.dedup.filt.bam.500Kb	4	500001	190500000	380	-0.0083272357760111	2	NEUT	0
NaomicfDNA2_S2_R1.dedup.filt.bam.500Kb	5	1000001	26000000	50	0.345088325695517	3	GAIN	1
NaomicfDNA2_S2_R1.dedup.filt.bam.500Kb	5	26000001	31000000	10	0.587598148593748	4	AMP	0
NaomicfDNA2_S2_R1.dedup.filt.bam.500Kb	5	31000001	52500000	43	0.903310317866684	5	HLAMP	0
NaomicfDNA2_S2_R1.dedup.filt.bam.500Kb	5	52500001	180500000	256	-0.0191791878735779	2	NEUT	0
NaomicfDNA2_S2_R1.dedup.filt.bam.500Kb	6	500001	170000000	339	0.014138411400712	2	NEUT	0
NaomicfDNA2_S2_R1.dedup.filt.bam.500Kb	7	500001	62500000	124	0.00332685476428987	2	NEUT	0
NaomicfDNA2_S2_R1.dedup.filt.bam.500Kb	7	63500001	125000000	123	-0.377214258866033	1	HETD	0
NaomicfDNA2_S2_R1.dedup.filt.bam.500Kb	7	125000001	159000000	68	-0.0300282545810628	2	NEUT	0
NaomicfDNA2_S2_R1.dedup.filt.bam.500Kb	8	500001	43500000	86	-0.0287889795409392	2	NEUT	0
NaomicfDNA2_S2_R1.dedup.filt.bam.500Kb	8	47000001	69000000	44	0.582307785878808	4	AMP	0
NaomicfDNA2_S2_R1.dedup.filt.bam.500Kb	8	69000001	146000000	154	1.26977938406818	5	HLAMP	0
NaomicfDNA2_S2_R1.dedup.filt.bam.500Kb	9	500001	32000000	63	-1.00170067696027	1	HETD	1
NaomicfDNA2_S2_R1.dedup.filt.bam.500Kb	9	32000001	141000000	218	0.342383272493851	3	GAIN	0
NaomicfDNA2_S2_R1.dedup.filt.bam.500Kb	10	500001	76500000	152	-0.0288827547185971	2	NEUT	0
NaomicfDNA2_S2_R1.dedup.filt.bam.500Kb	10	76500001	79500000	6	0.45494666766913	4	AMP	0
NaomicfDNA2_S2_R1.dedup.filt.bam.500Kb	10	79500001	135000000	111	-0.0475483431576184	2	NEUT	0
NaomicfDNA2_S2_R1.dedup.filt.bam.500Kb	11	500001	134500000	268	-0.0337258819708614	2	NEUT	0
NaomicfDNA2_S2_R1.dedup.filt.bam.500Kb	12	500001	38500000	76	-0.958529470556709	1	HETD	1
NaomicfDNA2_S2_R1.dedup.filt.bam.500Kb	12	38500001	133500000	190	0.307894204846359	3	GAIN	0
NaomicfDNA2_S2_R1.dedup.filt.bam.500Kb	13	19500001	55000000	71	-0.0138556431726976	2	NEUT	0
NaomicfDNA2_S2_R1.dedup.filt.bam.500Kb	13	55000001	59000000	8	0.363352844913171	3	GAIN	1
NaomicfDNA2_S2_R1.dedup.filt.bam.500Kb	13	59000001	114000000	110	0.559811842106226	4	AMP	0
NaomicfDNA2_S2_R1.dedup.filt.bam.500Kb	14	20500001	26000000	11	0.533041192927491	4	AMP	0
NaomicfDNA2_S2_R1.dedup.filt.bam.500Kb	14	26000001	29000000	6	0.314384889835318	3	GAIN	1
NaomicfDNA2_S2_R1.dedup.filt.bam.500Kb	14	29000001	41000000	24	0.544696726162833	4	AMP	0
NaomicfDNA2_S2_R1.dedup.filt.bam.500Kb	14	41000001	49000000	16	0.373041984807782	3	GAIN	1
NaomicfDNA2_S2_R1.dedup.filt.bam.500Kb	14	49000001	82000000	66	0.509486310994896	4	AMP	0
NaomicfDNA2_S2_R1.dedup.filt.bam.500Kb	14	82000001	87500000	11	0.349269255924013	3	GAIN	1
NaomicfDNA2_S2_R1.dedup.filt.bam.500Kb	14	87500001	104500000	34	0.512195692281686	4	AMP	0
NaomicfDNA2_S2_R1.dedup.filt.bam.500Kb	14	104500001	107000000	5	0.256084140537954	3	GAIN	1
NaomicfDNA2_S2_R1.dedup.filt.bam.500Kb	15	24000001	102000000	156	-0.0440801042793215	2	NEUT	0
NaomicfDNA2_S2_R1.dedup.filt.bam.500Kb	16	500001	90000000	179	-0.0672685416715298	2	NEUT	0
NaomicfDNA2_S2_R1.dedup.filt.bam.500Kb	17	500001	81000000	161	-0.0293574013870496	2	NEUT	0
NaomicfDNA2_S2_R1.dedup.filt.bam.500Kb	18	500001	25500000	50	0.58208416814747	4	AMP	0
NaomicfDNA2_S2_R1.dedup.filt.bam.500Kb	18	25500001	78000000	105	-1.02807458500276	1	HETD	1
NaomicfDNA2_S2_R1.dedup.filt.bam.500Kb	19	500001	6000000	11	0.375608539285523	3	GAIN	1
NaomicfDNA2_S2_R1.dedup.filt.bam.500Kb	19	6000001	18500000	25	0.495816775482474	4	AMP	0
NaomicfDNA2_S2_R1.dedup.filt.bam.500Kb	19	18500001	32500000	28	0.347187446980011	3	GAIN	1
NaomicfDNA2_S2_R1.dedup.filt.bam.500Kb	19	32500001	50000000	35	0.524185930766514	4	AMP	0
NaomicfDNA2_S2_R1.dedup.filt.bam.500Kb	19	50000001	54500000	9	0.376953131063632	3	GAIN	1
NaomicfDNA2_S2_R1.dedup.filt.bam.500Kb	19	54500001	59000000	9	0.517162891307467	4	AMP	0
NaomicfDNA2_S2_R1.dedup.filt.bam.500Kb	20	500001	19500000	38	-0.0354874126157868	2	NEUT	0
NaomicfDNA2_S2_R1.dedup.filt.bam.500Kb	20	19500001	59000000	79	0.518940291597842	4	AMP	0
NaomicfDNA2_S2_R1.dedup.filt.bam.500Kb	20	59000001	62500000	7	0.331551518126856	3	GAIN	1
NaomicfDNA2_S2_R1.dedup.filt.bam.500Kb	21	15500001	19500000	8	-0.0277632233668671	2	NEUT	0
NaomicfDNA2_S2_R1.dedup.filt.bam.500Kb	21	19500001	26500000	14	-0.293594211601068	1	HETD	0
NaomicfDNA2_S2_R1.dedup.filt.bam.500Kb	21	26500001	48000000	43	-0.037901041419194	2	NEUT	0
NaomicfDNA2_S2_R1.dedup.filt.bam.500Kb	22	17500001	51000000	67	-0.0740246825480127	2	NEUT	0
NaomicfDNA2_S2_R1.dedup.filt.bam.500Kb	X	3000001	43500000	81	-0.0800537051238876	2	NEUT	0
NaomicfDNA2_S2_R1.dedup.filt.bam.500Kb	X	43500001	54500000	22	0.5105625614954	4	AMP	0
NaomicfDNA2_S2_R1.dedup.filt.bam.500Kb	X	57000001	79500000	45	0.0540433562317005	2	NEUT	0
NaomicfDNA2_S2_R1.dedup.filt.bam.500Kb	X	79500001	154500000	150	0.577026079334113	4	AMP	0