ID	chrom	start	end	num.mark	seg.median.logR	copy.number	call	subclone.status
NaomicfDNA2_S2_R1.dedup.filt.bam.1Mb	1	1000001	120000000	119	-0.0280748454956991	2	NEUT	0
NaomicfDNA2_S2_R1.dedup.filt.bam.1Mb	1	150000001	248000000	98	0.96059252446518	4	AMP	0
NaomicfDNA2_S2_R1.dedup.filt.bam.1Mb	2	1000001	243000000	242	-0.00650078385424573	2	NEUT	0
NaomicfDNA2_S2_R1.dedup.filt.bam.1Mb	3	1000001	197000000	196	-0.000786268797284551	2	NEUT	0
NaomicfDNA2_S2_R1.dedup.filt.bam.1Mb	4	2000001	191000000	189	-0.00167064085734937	2	NEUT	0
NaomicfDNA2_S2_R1.dedup.filt.bam.1Mb	5	1000001	26000000	25	0.357092991130754	3	GAIN	1
NaomicfDNA2_S2_R1.dedup.filt.bam.1Mb	5	26000001	34000000	8	0.624773514407374	3	GAIN	0
NaomicfDNA2_S2_R1.dedup.filt.bam.1Mb	5	35000001	53000000	18	0.94480078454761	4	AMP	0
NaomicfDNA2_S2_R1.dedup.filt.bam.1Mb	5	53000001	180000000	127	-0.0161726114083652	2	NEUT	0
NaomicfDNA2_S2_R1.dedup.filt.bam.1Mb	6	1000001	170000000	169	0.0135310367884975	2	NEUT	0
NaomicfDNA2_S2_R1.dedup.filt.bam.1Mb	7	1000001	56000000	55	-0.0119613845840104	2	NEUT	0
NaomicfDNA2_S2_R1.dedup.filt.bam.1Mb	7	67000001	125000000	58	-0.356034052970742	1	HETD	1
NaomicfDNA2_S2_R1.dedup.filt.bam.1Mb	7	125000001	159000000	34	-0.0290284669177269	2	NEUT	0
NaomicfDNA2_S2_R1.dedup.filt.bam.1Mb	8	1000001	43000000	42	-0.0473665635824664	2	NEUT	0
NaomicfDNA2_S2_R1.dedup.filt.bam.1Mb	8	47000001	69000000	22	0.576381194650836	3	GAIN	0
NaomicfDNA2_S2_R1.dedup.filt.bam.1Mb	8	69000001	145000000	76	1.27385355486365	5	HLAMP	0
NaomicfDNA2_S2_R1.dedup.filt.bam.1Mb	9	1000001	32000000	31	-1.01107963742109	1	HETD	0
NaomicfDNA2_S2_R1.dedup.filt.bam.1Mb	9	32000001	141000000	109	0.339617626100466	3	GAIN	1
NaomicfDNA2_S2_R1.dedup.filt.bam.1Mb	10	1000001	135000000	134	-0.0420545604419134	2	NEUT	0
NaomicfDNA2_S2_R1.dedup.filt.bam.1Mb	11	2000001	134000000	132	-0.0317335201193937	2	NEUT	0
NaomicfDNA2_S2_R1.dedup.filt.bam.1Mb	12	1000001	34000000	33	-0.964256969869038	1	HETD	0
NaomicfDNA2_S2_R1.dedup.filt.bam.1Mb	12	38000001	132000000	94	0.303374241283254	3	GAIN	1
NaomicfDNA2_S2_R1.dedup.filt.bam.1Mb	13	20000001	55000000	35	-0.0391446445444403	2	NEUT	0
NaomicfDNA2_S2_R1.dedup.filt.bam.1Mb	13	55000001	114000000	59	0.566430926953825	3	GAIN	0
NaomicfDNA2_S2_R1.dedup.filt.bam.1Mb	14	21000001	106000000	85	0.512057193557761	3	GAIN	0
NaomicfDNA2_S2_R1.dedup.filt.bam.1Mb	15	25000001	102000000	77	-0.0341053107666152	2	NEUT	0
NaomicfDNA2_S2_R1.dedup.filt.bam.1Mb	16	1000001	90000000	89	-0.0679105409647253	2	NEUT	0
NaomicfDNA2_S2_R1.dedup.filt.bam.1Mb	17	1000001	81000000	80	-0.0213187046192162	2	NEUT	0
NaomicfDNA2_S2_R1.dedup.filt.bam.1Mb	18	1000001	26000000	25	0.555055276556415	3	GAIN	0
NaomicfDNA2_S2_R1.dedup.filt.bam.1Mb	18	26000001	78000000	52	-1.0183623619875	1	HETD	0
NaomicfDNA2_S2_R1.dedup.filt.bam.1Mb	19	1000001	6000000	5	0.319037581342185	3	GAIN	1
NaomicfDNA2_S2_R1.dedup.filt.bam.1Mb	19	6000001	59000000	53	0.518620013298765	3	GAIN	0
NaomicfDNA2_S2_R1.dedup.filt.bam.1Mb	20	1000001	19000000	18	-0.014434163884094	2	NEUT	0
NaomicfDNA2_S2_R1.dedup.filt.bam.1Mb	20	19000001	61000000	42	0.515614879528593	3	GAIN	0
NaomicfDNA2_S2_R1.dedup.filt.bam.1Mb	21	16000001	48000000	32	-0.0454174825822254	2	NEUT	0
NaomicfDNA2_S2_R1.dedup.filt.bam.1Mb	22	22000001	50000000	28	-0.0613635908691712	2	NEUT	0
NaomicfDNA2_S2_R1.dedup.filt.bam.1Mb	X	4000001	43000000	39	-0.0723078754493548	2	NEUT	0
NaomicfDNA2_S2_R1.dedup.filt.bam.1Mb	X	43000001	55000000	12	0.498328507548661	3	GAIN	0
NaomicfDNA2_S2_R1.dedup.filt.bam.1Mb	X	57000001	79000000	22	0.0237467603730325	2	NEUT	0
NaomicfDNA2_S2_R1.dedup.filt.bam.1Mb	X	79000001	151000000	72	0.577049162454768	3	GAIN	0