Sample	Tumor Fraction	Ploidy
NaomicfDNA2_S2_R1.dedup.filt.bam.1Mb	0.9706	2.027


NaomicfDNA2_S2_R1.dedup.filt.bam.1Mb
Gender:	female
Tumor Fraction:	0.9706
Ploidy:	2.027
Subclone Fraction:	0.5302
Fraction Genome Subclonal:	0.09561
Fraction CNA Subclonal:	0.2793
Coverage:	NA
ChrY coverage fraction:	0.0004248
ChrX median log ratio:	0.4847
Student's t mean: -0.68, -0.013, 0.38, 0.67, 0.89, -0.31, 0.22
Student's t precision: 340, 700, 420, 400, 340, 190, 560
Gamma Rate Init:	0.025
GC-Map correction MAD:	0.0565


init	n_est	phi_est	BIC	Frac_genome_subclonal	Frac_CNA_subclonal	loglik
n0.5-p2	0.029	2.027	NA	0.096	0.28	3350
n0.5-p3	0.33	3.037	NA	0.0042	0.0043	2335
n0.6-p2	0.28	2.036	NA	0.075	0.22	2805
n0.6-p3	0.32	2.976	NA	0.42	0.43	2605
n0.7-p2	0.51	2.048	NA	0.053	0.16	2898
n0.7-p3	0.28	2.989	NA	0.41	0.42	2595
n0.8-p2	0.51	2.048	NA	0.055	0.16	2898
n0.8-p3	0.28	2.987	NA	0.41	0.42	2595
n0.9-p2	0.51	2.048	NA	0.055	0.16	2898
n0.9-p3	0.51	2.048	NA	0.055	0.16	2898