253302304 + 0 in total (QC-passed reads + QC-failed reads) 42154 + 0 secondary 0 + 0 supplementary 0 + 0 duplicates 142096448 + 0 mapped (56.10% : N/A) 253260150 + 0 paired in sequencing 126651937 + 0 read1 126608213 + 0 read2 137262548 + 0 properly paired (54.20% : N/A) 139964286 + 0 with itself and mate mapped 2090008 + 0 singletons (0.83% : N/A) 2074670 + 0 with mate mapped to a different chr 1355843 + 0 with mate mapped to a different chr (mapQ>=5)