File table
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FilesPath
Alignment
Control 1
Filtered BAM/srv/www/kundaje/natprot_chip/ENCSR000EGR/align/ctl1/ENCFF000YRN.merged.nodup.bam
Raw BAM from aligner/srv/www/kundaje/natprot_chip/ENCSR000EGR/align/ctl1/ENCFF000YRN.merged.bam
TAG-ALIGN/srv/www/kundaje/natprot_chip/ENCSR000EGR/align/ctl1/ENCFF000YRN.merged.nodup.tagAlign.gz
Control 2
Filtered BAM/srv/www/kundaje/natprot_chip/ENCSR000EGR/align/ctl2/ENCFF000YRC.merged.nodup.bam
Raw BAM from aligner/srv/www/kundaje/natprot_chip/ENCSR000EGR/align/ctl2/ENCFF000YRC.merged.bam
TAG-ALIGN/srv/www/kundaje/natprot_chip/ENCSR000EGR/align/ctl2/ENCFF000YRC.merged.nodup.tagAlign.gz
Pooled control
TAG-ALIGN/srv/www/kundaje/natprot_chip/ENCSR000EGR/align/pooled-ctl/basename_prefix.pooled.tagAlign.gz
Pooled replicate
Pseudoreplicate 1
TAG-ALIGN/srv/www/kundaje/natprot_chip/ENCSR000EGR/align/pooled-rep/pseudorep1/basename_prefix.pooled.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGN/srv/www/kundaje/natprot_chip/ENCSR000EGR/align/pooled-rep/pseudorep2/basename_prefix.pooled.tagAlign.gz
TAG-ALIGN/srv/www/kundaje/natprot_chip/ENCSR000EGR/align/pooled-rep/basename_prefix.pooled.tagAlign.gz
Replicate 1
Pseudoreplicate 1
TAG-ALIGN/srv/www/kundaje/natprot_chip/ENCSR000EGR/align/rep1/pseudorep1/ENCFF000YUU.merged.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGN/srv/www/kundaje/natprot_chip/ENCSR000EGR/align/rep1/pseudorep2/ENCFF000YUU.merged.nodup.pr2.tagAlign.gz
Filtered BAM/srv/www/kundaje/natprot_chip/ENCSR000EGR/align/rep1/ENCFF000YUU.merged.nodup.bam
Raw BAM from aligner/srv/www/kundaje/natprot_chip/ENCSR000EGR/align/rep1/ENCFF000YUU.merged.bam
TAG-ALIGN/srv/www/kundaje/natprot_chip/ENCSR000EGR/align/rep1/ENCFF000YUU.merged.nodup.tagAlign.gz
Replicate 2
Pseudoreplicate 1
TAG-ALIGN/srv/www/kundaje/natprot_chip/ENCSR000EGR/align/rep2/pseudorep1/ENCFF000YUV.merged.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGN/srv/www/kundaje/natprot_chip/ENCSR000EGR/align/rep2/pseudorep2/ENCFF000YUV.merged.nodup.pr2.tagAlign.gz
Filtered BAM/srv/www/kundaje/natprot_chip/ENCSR000EGR/align/rep2/ENCFF000YUV.merged.nodup.bam
Raw BAM from aligner/srv/www/kundaje/natprot_chip/ENCSR000EGR/align/rep2/ENCFF000YUV.merged.bam
TAG-ALIGN/srv/www/kundaje/natprot_chip/ENCSR000EGR/align/rep2/ENCFF000YUV.merged.nodup.tagAlign.gz
Replicate 3
Pseudoreplicate 1
TAG-ALIGN/srv/www/kundaje/natprot_chip/ENCSR000EGR/align/rep3/pseudorep1/ENCFF000YVR.merged.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGN/srv/www/kundaje/natprot_chip/ENCSR000EGR/align/rep3/pseudorep2/ENCFF000YVR.merged.nodup.pr2.tagAlign.gz
Filtered BAM/srv/www/kundaje/natprot_chip/ENCSR000EGR/align/rep3/ENCFF000YVR.merged.nodup.bam
Raw BAM from aligner/srv/www/kundaje/natprot_chip/ENCSR000EGR/align/rep3/ENCFF000YVR.merged.bam
TAG-ALIGN/srv/www/kundaje/natprot_chip/ENCSR000EGR/align/rep3/ENCFF000YVR.merged.nodup.tagAlign.gz
Peak
IDR reproducibility
Conservative peak/srv/www/kundaje/natprot_chip/ENCSR000EGR/peak/idr_reproducibility/idr.conservative_peak.regionPeak.gz
Conservative peak (BigBed)/srv/www/kundaje/natprot_chip/ENCSR000EGR/peak/idr_reproducibility/idr.conservative_peak.regionPeak.bb
Conservative peak (hammock)/srv/www/kundaje/natprot_chip/ENCSR000EGR/peak/idr_reproducibility/idr.conservative_peak.regionPeak.hammock.gz
Optimal peak/srv/www/kundaje/natprot_chip/ENCSR000EGR/peak/idr_reproducibility/idr.optimal_peak.regionPeak.gz
Optimal peak (BigBed)/srv/www/kundaje/natprot_chip/ENCSR000EGR/peak/idr_reproducibility/idr.optimal_peak.regionPeak.bb
Optimal peak (hammock)/srv/www/kundaje/natprot_chip/ENCSR000EGR/peak/idr_reproducibility/idr.optimal_peak.regionPeak.hammock.gz
Overlap reproducibility
Conservative peak/srv/www/kundaje/natprot_chip/ENCSR000EGR/peak/overlap_reproducibility/overlap.conservative_peak.regionPeak.gz
Conservative peak (BigBed)/srv/www/kundaje/natprot_chip/ENCSR000EGR/peak/overlap_reproducibility/overlap.conservative_peak.regionPeak.bb
Conservative peak (hammock)/srv/www/kundaje/natprot_chip/ENCSR000EGR/peak/overlap_reproducibility/overlap.conservative_peak.regionPeak.hammock.gz
Optimal peak/srv/www/kundaje/natprot_chip/ENCSR000EGR/peak/overlap_reproducibility/overlap.optimal_peak.regionPeak.gz
Optimal peak (BigBed)/srv/www/kundaje/natprot_chip/ENCSR000EGR/peak/overlap_reproducibility/overlap.optimal_peak.regionPeak.bb
Optimal peak (hammock)/srv/www/kundaje/natprot_chip/ENCSR000EGR/peak/overlap_reproducibility/overlap.optimal_peak.regionPeak.hammock.gz
Pooled pseudoreplicate 1 vs. 2
Blacklist-filtered IDR peak/srv/www/kundaje/natprot_chip/ENCSR000EGR/peak/pooled-pseudorep1_vs_2/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)/srv/www/kundaje/natprot_chip/ENCSR000EGR/peak/pooled-pseudorep1_vs_2/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)/srv/www/kundaje/natprot_chip/ENCSR000EGR/peak/pooled-pseudorep1_vs_2/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peak/srv/www/kundaje/natprot_chip/ENCSR000EGR/peak/pooled-pseudorep1_vs_2/pooled-pr1_vs_pooled-pr2.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)/srv/www/kundaje/natprot_chip/ENCSR000EGR/peak/pooled-pseudorep1_vs_2/pooled-pr1_vs_pooled-pr2.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)/srv/www/kundaje/natprot_chip/ENCSR000EGR/peak/pooled-pseudorep1_vs_2/pooled-pr1_vs_pooled-pr2.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peak/srv/www/kundaje/natprot_chip/ENCSR000EGR/peak/pooled-pseudorep1_vs_2/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.gz
Pooled replicate
Pseudoreplicate 1
Blacklist-filtered narrowpeak/srv/www/kundaje/natprot_chip/ENCSR000EGR/peak/pooled-rep/pseudorep1/basename_prefix.pooled_x_basename_prefix.pooled.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)/srv/www/kundaje/natprot_chip/ENCSR000EGR/peak/pooled-rep/pseudorep1/basename_prefix.pooled_x_basename_prefix.pooled.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)/srv/www/kundaje/natprot_chip/ENCSR000EGR/peak/pooled-rep/pseudorep1/basename_prefix.pooled_x_basename_prefix.pooled.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeak/srv/www/kundaje/natprot_chip/ENCSR000EGR/peak/pooled-rep/pseudorep1/basename_prefix.pooled_x_basename_prefix.pooled.300K.regionPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeak/srv/www/kundaje/natprot_chip/ENCSR000EGR/peak/pooled-rep/pseudorep2/basename_prefix.pooled_x_basename_prefix.pooled.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)/srv/www/kundaje/natprot_chip/ENCSR000EGR/peak/pooled-rep/pseudorep2/basename_prefix.pooled_x_basename_prefix.pooled.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)/srv/www/kundaje/natprot_chip/ENCSR000EGR/peak/pooled-rep/pseudorep2/basename_prefix.pooled_x_basename_prefix.pooled.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeak/srv/www/kundaje/natprot_chip/ENCSR000EGR/peak/pooled-rep/pseudorep2/basename_prefix.pooled_x_basename_prefix.pooled.300K.regionPeak.gz
Blacklist-filtered narrowpeak/srv/www/kundaje/natprot_chip/ENCSR000EGR/peak/pooled-rep/basename_prefix.pooled_x_basename_prefix.pooled.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)/srv/www/kundaje/natprot_chip/ENCSR000EGR/peak/pooled-rep/basename_prefix.pooled_x_basename_prefix.pooled.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)/srv/www/kundaje/natprot_chip/ENCSR000EGR/peak/pooled-rep/basename_prefix.pooled_x_basename_prefix.pooled.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeak/srv/www/kundaje/natprot_chip/ENCSR000EGR/peak/pooled-rep/basename_prefix.pooled_x_basename_prefix.pooled.300K.regionPeak.gz
Rep1 vs. rep2
Blacklist-filtered IDR peak/srv/www/kundaje/natprot_chip/ENCSR000EGR/peak/rep1_vs_rep2/rep1_vs_rep2.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)/srv/www/kundaje/natprot_chip/ENCSR000EGR/peak/rep1_vs_rep2/rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)/srv/www/kundaje/natprot_chip/ENCSR000EGR/peak/rep1_vs_rep2/rep1_vs_rep2.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peak/srv/www/kundaje/natprot_chip/ENCSR000EGR/peak/rep1_vs_rep2/rep1_vs_rep2.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)/srv/www/kundaje/natprot_chip/ENCSR000EGR/peak/rep1_vs_rep2/rep1_vs_rep2.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)/srv/www/kundaje/natprot_chip/ENCSR000EGR/peak/rep1_vs_rep2/rep1_vs_rep2.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peak/srv/www/kundaje/natprot_chip/ENCSR000EGR/peak/rep1_vs_rep2/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.gz
Rep1 vs. rep3
Blacklist-filtered IDR peak/srv/www/kundaje/natprot_chip/ENCSR000EGR/peak/rep1_vs_rep3/rep1_vs_rep3.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)/srv/www/kundaje/natprot_chip/ENCSR000EGR/peak/rep1_vs_rep3/rep1_vs_rep3.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)/srv/www/kundaje/natprot_chip/ENCSR000EGR/peak/rep1_vs_rep3/rep1_vs_rep3.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peak/srv/www/kundaje/natprot_chip/ENCSR000EGR/peak/rep1_vs_rep3/rep1_vs_rep3.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)/srv/www/kundaje/natprot_chip/ENCSR000EGR/peak/rep1_vs_rep3/rep1_vs_rep3.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)/srv/www/kundaje/natprot_chip/ENCSR000EGR/peak/rep1_vs_rep3/rep1_vs_rep3.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peak/srv/www/kundaje/natprot_chip/ENCSR000EGR/peak/rep1_vs_rep3/rep1_vs_rep3.idr0.05.unthresholded-peaks.txt.gz
Rep2 vs. rep3
Blacklist-filtered IDR peak/srv/www/kundaje/natprot_chip/ENCSR000EGR/peak/rep2_vs_rep3/rep2_vs_rep3.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)/srv/www/kundaje/natprot_chip/ENCSR000EGR/peak/rep2_vs_rep3/rep2_vs_rep3.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)/srv/www/kundaje/natprot_chip/ENCSR000EGR/peak/rep2_vs_rep3/rep2_vs_rep3.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peak/srv/www/kundaje/natprot_chip/ENCSR000EGR/peak/rep2_vs_rep3/rep2_vs_rep3.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)/srv/www/kundaje/natprot_chip/ENCSR000EGR/peak/rep2_vs_rep3/rep2_vs_rep3.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)/srv/www/kundaje/natprot_chip/ENCSR000EGR/peak/rep2_vs_rep3/rep2_vs_rep3.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peak/srv/www/kundaje/natprot_chip/ENCSR000EGR/peak/rep2_vs_rep3/rep2_vs_rep3.idr0.05.unthresholded-peaks.txt.gz
Replicate 1
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peak/srv/www/kundaje/natprot_chip/ENCSR000EGR/peak/rep1-pseudorep1_vs_2/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)/srv/www/kundaje/natprot_chip/ENCSR000EGR/peak/rep1-pseudorep1_vs_2/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)/srv/www/kundaje/natprot_chip/ENCSR000EGR/peak/rep1-pseudorep1_vs_2/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peak/srv/www/kundaje/natprot_chip/ENCSR000EGR/peak/rep1-pseudorep1_vs_2/rep1-pr1_vs_rep1-pr2.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)/srv/www/kundaje/natprot_chip/ENCSR000EGR/peak/rep1-pseudorep1_vs_2/rep1-pr1_vs_rep1-pr2.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)/srv/www/kundaje/natprot_chip/ENCSR000EGR/peak/rep1-pseudorep1_vs_2/rep1-pr1_vs_rep1-pr2.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peak/srv/www/kundaje/natprot_chip/ENCSR000EGR/peak/rep1-pseudorep1_vs_2/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeak/srv/www/kundaje/natprot_chip/ENCSR000EGR/peak/rep1/pseudorep1/ENCFF000YUU.merged.nodup.pr1_x_ctl_for_rep1.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)/srv/www/kundaje/natprot_chip/ENCSR000EGR/peak/rep1/pseudorep1/ENCFF000YUU.merged.nodup.pr1_x_ctl_for_rep1.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)/srv/www/kundaje/natprot_chip/ENCSR000EGR/peak/rep1/pseudorep1/ENCFF000YUU.merged.nodup.pr1_x_ctl_for_rep1.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeak/srv/www/kundaje/natprot_chip/ENCSR000EGR/peak/rep1/pseudorep1/ENCFF000YUU.merged.nodup.pr1_x_ctl_for_rep1.300K.regionPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeak/srv/www/kundaje/natprot_chip/ENCSR000EGR/peak/rep1/pseudorep2/ENCFF000YUU.merged.nodup.pr2_x_ctl_for_rep1.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)/srv/www/kundaje/natprot_chip/ENCSR000EGR/peak/rep1/pseudorep2/ENCFF000YUU.merged.nodup.pr2_x_ctl_for_rep1.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)/srv/www/kundaje/natprot_chip/ENCSR000EGR/peak/rep1/pseudorep2/ENCFF000YUU.merged.nodup.pr2_x_ctl_for_rep1.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeak/srv/www/kundaje/natprot_chip/ENCSR000EGR/peak/rep1/pseudorep2/ENCFF000YUU.merged.nodup.pr2_x_ctl_for_rep1.300K.regionPeak.gz
Blacklist-filtered narrowpeak/srv/www/kundaje/natprot_chip/ENCSR000EGR/peak/rep1/ENCFF000YUU.merged.nodup_x_ctl_for_rep1.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)/srv/www/kundaje/natprot_chip/ENCSR000EGR/peak/rep1/ENCFF000YUU.merged.nodup_x_ctl_for_rep1.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)/srv/www/kundaje/natprot_chip/ENCSR000EGR/peak/rep1/ENCFF000YUU.merged.nodup_x_ctl_for_rep1.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeak/srv/www/kundaje/natprot_chip/ENCSR000EGR/peak/rep1/ENCFF000YUU.merged.nodup_x_ctl_for_rep1.300K.regionPeak.gz
Replicate 2
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peak/srv/www/kundaje/natprot_chip/ENCSR000EGR/peak/rep2-pseudorep1_vs_2/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)/srv/www/kundaje/natprot_chip/ENCSR000EGR/peak/rep2-pseudorep1_vs_2/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)/srv/www/kundaje/natprot_chip/ENCSR000EGR/peak/rep2-pseudorep1_vs_2/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peak/srv/www/kundaje/natprot_chip/ENCSR000EGR/peak/rep2-pseudorep1_vs_2/rep2-pr1_vs_rep2-pr2.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)/srv/www/kundaje/natprot_chip/ENCSR000EGR/peak/rep2-pseudorep1_vs_2/rep2-pr1_vs_rep2-pr2.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)/srv/www/kundaje/natprot_chip/ENCSR000EGR/peak/rep2-pseudorep1_vs_2/rep2-pr1_vs_rep2-pr2.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peak/srv/www/kundaje/natprot_chip/ENCSR000EGR/peak/rep2-pseudorep1_vs_2/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeak/srv/www/kundaje/natprot_chip/ENCSR000EGR/peak/rep2/pseudorep1/ENCFF000YUV.merged.nodup.pr1_x_ctl_for_rep2.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)/srv/www/kundaje/natprot_chip/ENCSR000EGR/peak/rep2/pseudorep1/ENCFF000YUV.merged.nodup.pr1_x_ctl_for_rep2.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)/srv/www/kundaje/natprot_chip/ENCSR000EGR/peak/rep2/pseudorep1/ENCFF000YUV.merged.nodup.pr1_x_ctl_for_rep2.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeak/srv/www/kundaje/natprot_chip/ENCSR000EGR/peak/rep2/pseudorep1/ENCFF000YUV.merged.nodup.pr1_x_ctl_for_rep2.300K.regionPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeak/srv/www/kundaje/natprot_chip/ENCSR000EGR/peak/rep2/pseudorep2/ENCFF000YUV.merged.nodup.pr2_x_ctl_for_rep2.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)/srv/www/kundaje/natprot_chip/ENCSR000EGR/peak/rep2/pseudorep2/ENCFF000YUV.merged.nodup.pr2_x_ctl_for_rep2.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)/srv/www/kundaje/natprot_chip/ENCSR000EGR/peak/rep2/pseudorep2/ENCFF000YUV.merged.nodup.pr2_x_ctl_for_rep2.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeak/srv/www/kundaje/natprot_chip/ENCSR000EGR/peak/rep2/pseudorep2/ENCFF000YUV.merged.nodup.pr2_x_ctl_for_rep2.300K.regionPeak.gz
Blacklist-filtered narrowpeak/srv/www/kundaje/natprot_chip/ENCSR000EGR/peak/rep2/ENCFF000YUV.merged.nodup_x_ctl_for_rep2.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)/srv/www/kundaje/natprot_chip/ENCSR000EGR/peak/rep2/ENCFF000YUV.merged.nodup_x_ctl_for_rep2.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)/srv/www/kundaje/natprot_chip/ENCSR000EGR/peak/rep2/ENCFF000YUV.merged.nodup_x_ctl_for_rep2.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeak/srv/www/kundaje/natprot_chip/ENCSR000EGR/peak/rep2/ENCFF000YUV.merged.nodup_x_ctl_for_rep2.300K.regionPeak.gz
Replicate 3
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peak/srv/www/kundaje/natprot_chip/ENCSR000EGR/peak/rep3-pseudorep1_vs_2/rep3-pr1_vs_rep3-pr2.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)/srv/www/kundaje/natprot_chip/ENCSR000EGR/peak/rep3-pseudorep1_vs_2/rep3-pr1_vs_rep3-pr2.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)/srv/www/kundaje/natprot_chip/ENCSR000EGR/peak/rep3-pseudorep1_vs_2/rep3-pr1_vs_rep3-pr2.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peak/srv/www/kundaje/natprot_chip/ENCSR000EGR/peak/rep3-pseudorep1_vs_2/rep3-pr1_vs_rep3-pr2.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)/srv/www/kundaje/natprot_chip/ENCSR000EGR/peak/rep3-pseudorep1_vs_2/rep3-pr1_vs_rep3-pr2.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)/srv/www/kundaje/natprot_chip/ENCSR000EGR/peak/rep3-pseudorep1_vs_2/rep3-pr1_vs_rep3-pr2.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peak/srv/www/kundaje/natprot_chip/ENCSR000EGR/peak/rep3-pseudorep1_vs_2/rep3-pr1_vs_rep3-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeak/srv/www/kundaje/natprot_chip/ENCSR000EGR/peak/rep3/pseudorep1/ENCFF000YVR.merged.nodup.pr1_x_ctl_for_rep3.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)/srv/www/kundaje/natprot_chip/ENCSR000EGR/peak/rep3/pseudorep1/ENCFF000YVR.merged.nodup.pr1_x_ctl_for_rep3.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)/srv/www/kundaje/natprot_chip/ENCSR000EGR/peak/rep3/pseudorep1/ENCFF000YVR.merged.nodup.pr1_x_ctl_for_rep3.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeak/srv/www/kundaje/natprot_chip/ENCSR000EGR/peak/rep3/pseudorep1/ENCFF000YVR.merged.nodup.pr1_x_ctl_for_rep3.300K.regionPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeak/srv/www/kundaje/natprot_chip/ENCSR000EGR/peak/rep3/pseudorep2/ENCFF000YVR.merged.nodup.pr2_x_ctl_for_rep3.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)/srv/www/kundaje/natprot_chip/ENCSR000EGR/peak/rep3/pseudorep2/ENCFF000YVR.merged.nodup.pr2_x_ctl_for_rep3.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)/srv/www/kundaje/natprot_chip/ENCSR000EGR/peak/rep3/pseudorep2/ENCFF000YVR.merged.nodup.pr2_x_ctl_for_rep3.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeak/srv/www/kundaje/natprot_chip/ENCSR000EGR/peak/rep3/pseudorep2/ENCFF000YVR.merged.nodup.pr2_x_ctl_for_rep3.300K.regionPeak.gz
Blacklist-filtered narrowpeak/srv/www/kundaje/natprot_chip/ENCSR000EGR/peak/rep3/ENCFF000YVR.merged.nodup_x_ctl_for_rep3.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)/srv/www/kundaje/natprot_chip/ENCSR000EGR/peak/rep3/ENCFF000YVR.merged.nodup_x_ctl_for_rep3.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)/srv/www/kundaje/natprot_chip/ENCSR000EGR/peak/rep3/ENCFF000YVR.merged.nodup_x_ctl_for_rep3.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeak/srv/www/kundaje/natprot_chip/ENCSR000EGR/peak/rep3/ENCFF000YVR.merged.nodup_x_ctl_for_rep3.300K.regionPeak.gz
QC and logs
Control 1
Dup QC for filtered BAM/srv/www/kundaje/natprot_chip/ENCSR000EGR/qc/ctl1/ENCFF000YRN.merged.dup.qc
Library complexity QC for filtered BAM/srv/www/kundaje/natprot_chip/ENCSR000EGR/qc/ctl1/ENCFF000YRN.merged.lib_complexity.qc
SAMstats log for Raw BAM/srv/www/kundaje/natprot_chip/ENCSR000EGR/qc/ctl1/ENCFF000YRN.merged.samstats.qc
SAMstats log for filtered BAM/srv/www/kundaje/natprot_chip/ENCSR000EGR/qc/ctl1/ENCFF000YRN.merged.nodup.samstats.qc
Control 2
Dup QC for filtered BAM/srv/www/kundaje/natprot_chip/ENCSR000EGR/qc/ctl2/ENCFF000YRC.merged.dup.qc
Library complexity QC for filtered BAM/srv/www/kundaje/natprot_chip/ENCSR000EGR/qc/ctl2/ENCFF000YRC.merged.lib_complexity.qc
SAMstats log for Raw BAM/srv/www/kundaje/natprot_chip/ENCSR000EGR/qc/ctl2/ENCFF000YRC.merged.samstats.qc
SAMstats log for filtered BAM/srv/www/kundaje/natprot_chip/ENCSR000EGR/qc/ctl2/ENCFF000YRC.merged.nodup.samstats.qc
Pooled pseudoreplicate 1 vs. 2
Fraction of IDR peaks in reads/srv/www/kundaje/natprot_chip/ENCSR000EGR/qc/pooled-pseudorep1_vs_2/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in reads/srv/www/kundaje/natprot_chip/ENCSR000EGR/qc/pooled-pseudorep1_vs_2/pooled-pr1_vs_pooled-pr2.overlap.bfilt.frip.qc
IDR log/srv/www/kundaje/natprot_chip/ENCSR000EGR/qc/pooled-pseudorep1_vs_2/pooled-pr1_vs_pooled-pr2.idr0.05.log
IDR plot/srv/www/kundaje/natprot_chip/ENCSR000EGR/qc/pooled-pseudorep1_vs_2/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.png
Pooled replicate
Pseudoreplicate 1
Fraction of peaks in reads/srv/www/kundaje/natprot_chip/ENCSR000EGR/qc/pooled-rep/pseudorep1/basename_prefix.pooled_x_basename_prefix.pooled.300K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in reads/srv/www/kundaje/natprot_chip/ENCSR000EGR/qc/pooled-rep/pseudorep2/basename_prefix.pooled_x_basename_prefix.pooled.300K.bfilt.frip.qc
Fraction of peaks in reads/srv/www/kundaje/natprot_chip/ENCSR000EGR/qc/pooled-rep/basename_prefix.pooled_x_basename_prefix.pooled.300K.bfilt.frip.qc
Rep1 vs. vs vs. rep2
Fraction of IDR peaks in reads/srv/www/kundaje/natprot_chip/ENCSR000EGR/qc/rep1_vs_rep2/rep1_vs_rep2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in reads/srv/www/kundaje/natprot_chip/ENCSR000EGR/qc/rep1_vs_rep2/rep1_vs_rep2.overlap.bfilt.frip.qc
IDR log/srv/www/kundaje/natprot_chip/ENCSR000EGR/qc/rep1_vs_rep2/rep1_vs_rep2.idr0.05.log
IDR plot/srv/www/kundaje/natprot_chip/ENCSR000EGR/qc/rep1_vs_rep2/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.png
Rep1 vs. vs vs. rep3
Fraction of IDR peaks in reads/srv/www/kundaje/natprot_chip/ENCSR000EGR/qc/rep1_vs_rep3/rep1_vs_rep3.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in reads/srv/www/kundaje/natprot_chip/ENCSR000EGR/qc/rep1_vs_rep3/rep1_vs_rep3.overlap.bfilt.frip.qc
IDR log/srv/www/kundaje/natprot_chip/ENCSR000EGR/qc/rep1_vs_rep3/rep1_vs_rep3.idr0.05.log
IDR plot/srv/www/kundaje/natprot_chip/ENCSR000EGR/qc/rep1_vs_rep3/rep1_vs_rep3.idr0.05.unthresholded-peaks.txt.png
Rep2 vs. vs vs. rep3
Fraction of IDR peaks in reads/srv/www/kundaje/natprot_chip/ENCSR000EGR/qc/rep2_vs_rep3/rep2_vs_rep3.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in reads/srv/www/kundaje/natprot_chip/ENCSR000EGR/qc/rep2_vs_rep3/rep2_vs_rep3.overlap.bfilt.frip.qc
IDR log/srv/www/kundaje/natprot_chip/ENCSR000EGR/qc/rep2_vs_rep3/rep2_vs_rep3.idr0.05.log
IDR plot/srv/www/kundaje/natprot_chip/ENCSR000EGR/qc/rep2_vs_rep3/rep2_vs_rep3.idr0.05.unthresholded-peaks.txt.png
Replicate 1
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in reads/srv/www/kundaje/natprot_chip/ENCSR000EGR/qc/rep1-pseudorep1_vs_2/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in reads/srv/www/kundaje/natprot_chip/ENCSR000EGR/qc/rep1-pseudorep1_vs_2/rep1-pr1_vs_rep1-pr2.overlap.bfilt.frip.qc
IDR log/srv/www/kundaje/natprot_chip/ENCSR000EGR/qc/rep1-pseudorep1_vs_2/rep1-pr1_vs_rep1-pr2.idr0.05.log
IDR plot/srv/www/kundaje/natprot_chip/ENCSR000EGR/qc/rep1-pseudorep1_vs_2/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in reads/srv/www/kundaje/natprot_chip/ENCSR000EGR/qc/rep1/pseudorep1/ENCFF000YUU.merged.nodup.pr1_x_ctl_for_rep1.300K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in reads/srv/www/kundaje/natprot_chip/ENCSR000EGR/qc/rep1/pseudorep2/ENCFF000YUU.merged.nodup.pr2_x_ctl_for_rep1.300K.bfilt.frip.qc
Cross-correlation Plot/srv/www/kundaje/natprot_chip/ENCSR000EGR/qc/rep1/ENCFF000YUU.merged.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation score/srv/www/kundaje/natprot_chip/ENCSR000EGR/qc/rep1/ENCFF000YUU.merged.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAM/srv/www/kundaje/natprot_chip/ENCSR000EGR/qc/rep1/ENCFF000YUU.merged.dup.qc
Fraction of peaks in reads/srv/www/kundaje/natprot_chip/ENCSR000EGR/qc/rep1/ENCFF000YUU.merged.nodup_x_ctl_for_rep1.300K.bfilt.frip.qc
Library complexity QC for filtered BAM/srv/www/kundaje/natprot_chip/ENCSR000EGR/qc/rep1/ENCFF000YUU.merged.lib_complexity.qc
SAMstats log for Raw BAM/srv/www/kundaje/natprot_chip/ENCSR000EGR/qc/rep1/ENCFF000YUU.merged.samstats.qc
SAMstats log for filtered BAM/srv/www/kundaje/natprot_chip/ENCSR000EGR/qc/rep1/ENCFF000YUU.merged.nodup.samstats.qc
Replicate 2
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in reads/srv/www/kundaje/natprot_chip/ENCSR000EGR/qc/rep2-pseudorep1_vs_2/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in reads/srv/www/kundaje/natprot_chip/ENCSR000EGR/qc/rep2-pseudorep1_vs_2/rep2-pr1_vs_rep2-pr2.overlap.bfilt.frip.qc
IDR log/srv/www/kundaje/natprot_chip/ENCSR000EGR/qc/rep2-pseudorep1_vs_2/rep2-pr1_vs_rep2-pr2.idr0.05.log
IDR plot/srv/www/kundaje/natprot_chip/ENCSR000EGR/qc/rep2-pseudorep1_vs_2/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in reads/srv/www/kundaje/natprot_chip/ENCSR000EGR/qc/rep2/pseudorep1/ENCFF000YUV.merged.nodup.pr1_x_ctl_for_rep2.300K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in reads/srv/www/kundaje/natprot_chip/ENCSR000EGR/qc/rep2/pseudorep2/ENCFF000YUV.merged.nodup.pr2_x_ctl_for_rep2.300K.bfilt.frip.qc
Cross-correlation Plot/srv/www/kundaje/natprot_chip/ENCSR000EGR/qc/rep2/ENCFF000YUV.merged.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation score/srv/www/kundaje/natprot_chip/ENCSR000EGR/qc/rep2/ENCFF000YUV.merged.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAM/srv/www/kundaje/natprot_chip/ENCSR000EGR/qc/rep2/ENCFF000YUV.merged.dup.qc
Fraction of peaks in reads/srv/www/kundaje/natprot_chip/ENCSR000EGR/qc/rep2/ENCFF000YUV.merged.nodup_x_ctl_for_rep2.300K.bfilt.frip.qc
Library complexity QC for filtered BAM/srv/www/kundaje/natprot_chip/ENCSR000EGR/qc/rep2/ENCFF000YUV.merged.lib_complexity.qc
SAMstats log for Raw BAM/srv/www/kundaje/natprot_chip/ENCSR000EGR/qc/rep2/ENCFF000YUV.merged.samstats.qc
SAMstats log for filtered BAM/srv/www/kundaje/natprot_chip/ENCSR000EGR/qc/rep2/ENCFF000YUV.merged.nodup.samstats.qc
Replicate 3
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in reads/srv/www/kundaje/natprot_chip/ENCSR000EGR/qc/rep3-pseudorep1_vs_2/rep3-pr1_vs_rep3-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in reads/srv/www/kundaje/natprot_chip/ENCSR000EGR/qc/rep3-pseudorep1_vs_2/rep3-pr1_vs_rep3-pr2.overlap.bfilt.frip.qc
IDR log/srv/www/kundaje/natprot_chip/ENCSR000EGR/qc/rep3-pseudorep1_vs_2/rep3-pr1_vs_rep3-pr2.idr0.05.log
IDR plot/srv/www/kundaje/natprot_chip/ENCSR000EGR/qc/rep3-pseudorep1_vs_2/rep3-pr1_vs_rep3-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in reads/srv/www/kundaje/natprot_chip/ENCSR000EGR/qc/rep3/pseudorep1/ENCFF000YVR.merged.nodup.pr1_x_ctl_for_rep3.300K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in reads/srv/www/kundaje/natprot_chip/ENCSR000EGR/qc/rep3/pseudorep2/ENCFF000YVR.merged.nodup.pr2_x_ctl_for_rep3.300K.bfilt.frip.qc
Cross-correlation Plot/srv/www/kundaje/natprot_chip/ENCSR000EGR/qc/rep3/ENCFF000YVR.merged.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation score/srv/www/kundaje/natprot_chip/ENCSR000EGR/qc/rep3/ENCFF000YVR.merged.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAM/srv/www/kundaje/natprot_chip/ENCSR000EGR/qc/rep3/ENCFF000YVR.merged.dup.qc
Fraction of peaks in reads/srv/www/kundaje/natprot_chip/ENCSR000EGR/qc/rep3/ENCFF000YVR.merged.nodup_x_ctl_for_rep3.300K.bfilt.frip.qc
Library complexity QC for filtered BAM/srv/www/kundaje/natprot_chip/ENCSR000EGR/qc/rep3/ENCFF000YVR.merged.lib_complexity.qc
SAMstats log for Raw BAM/srv/www/kundaje/natprot_chip/ENCSR000EGR/qc/rep3/ENCFF000YVR.merged.samstats.qc
SAMstats log for filtered BAM/srv/www/kundaje/natprot_chip/ENCSR000EGR/qc/rep3/ENCFF000YVR.merged.nodup.samstats.qc
Final HTML report/srv/www/kundaje/natprot_chip/ENCSR000EGR/qc/qc.html
Final QC JSON file/srv/www/kundaje/natprot_chip/ENCSR000EGR/qc/qc.json
Jensen-Shannon distance plot/srv/www/kundaje/natprot_chip/ENCSR000EGR/qc/ENCFF000YUU.merged.nodup.jsd_plot.png
Reproducibility QC for IDR peaks/srv/www/kundaje/natprot_chip/ENCSR000EGR/qc/overlap.reproducibility.qc
Reproducibility QC for overlap peaks/srv/www/kundaje/natprot_chip/ENCSR000EGR/qc/idr.reproducibility.qc
Signal
Pooled replicate
MACS2 signal track (fold-enrichment)/srv/www/kundaje/natprot_chip/ENCSR000EGR/signal/pooled-rep/basename_prefix.pooled_x_basename_prefix.pooled.fc.signal.bigwig
MACS2 signal track (p-val)/srv/www/kundaje/natprot_chip/ENCSR000EGR/signal/pooled-rep/basename_prefix.pooled_x_basename_prefix.pooled.pval.signal.bigwig
Replicate 1
MACS2 signal track (fold-enrichment)/srv/www/kundaje/natprot_chip/ENCSR000EGR/signal/rep1/ENCFF000YUU.merged.nodup_x_ctl_for_rep1.fc.signal.bigwig
MACS2 signal track (p-val)/srv/www/kundaje/natprot_chip/ENCSR000EGR/signal/rep1/ENCFF000YUU.merged.nodup_x_ctl_for_rep1.pval.signal.bigwig
Replicate 2
MACS2 signal track (fold-enrichment)/srv/www/kundaje/natprot_chip/ENCSR000EGR/signal/rep2/ENCFF000YUV.merged.nodup_x_ctl_for_rep2.fc.signal.bigwig
MACS2 signal track (p-val)/srv/www/kundaje/natprot_chip/ENCSR000EGR/signal/rep2/ENCFF000YUV.merged.nodup_x_ctl_for_rep2.pval.signal.bigwig
Replicate 3
MACS2 signal track (fold-enrichment)/srv/www/kundaje/natprot_chip/ENCSR000EGR/signal/rep3/ENCFF000YVR.merged.nodup_x_ctl_for_rep3.fc.signal.bigwig
MACS2 signal track (p-val)/srv/www/kundaje/natprot_chip/ENCSR000EGR/signal/rep3/ENCFF000YVR.merged.nodup_x_ctl_for_rep3.pval.signal.bigwig
Task graph D cluster_pooled_rep Pooled replicate cluster_rep1 Replicate 1 cluster_rep2 Replicate 2 cluster_rep3 Replicate 3 cluster_pooled_ctl Pooled control cluster_ctl1 Control 1 cluster_ctl2 Control 2 8461053343454435385 chip.macs2_signal_track_pooled 2781752791174736850 BW p-val 8461053343454435385->2781752791174736850 8833752711753029917 BW FC 8461053343454435385->8833752711753029917 -4299842363929878155 chip.call_peak_pooled 4285809768502835813 Peak (bfilt) -4299842363929878155->4285809768502835813 -117755498747110581 Peak -4299842363929878155->-117755498747110581 -534093512880753985 chip.idr_ppr -117755498747110581->-534093512880753985 -5255822262532150256 chip.idr -117755498747110581->-5255822262532150256 -6625909150491895017 chip.idr -117755498747110581->-6625909150491895017 -1213843122010243389 chip.idr -117755498747110581->-1213843122010243389 -2629708804855287376 chip.overlap -117755498747110581->-2629708804855287376 -1996086729641694682 chip.overlap -117755498747110581->-1996086729641694682 -7397629989147364314 chip.overlap -117755498747110581->-7397629989147364314 -8638289995265584845 chip.overlap_ppr -117755498747110581->-8638289995265584845 -1934737577473332653 chip.pool_ta -2558428232060422774 TAG-ALIGN -1934737577473332653->-2558428232060422774 -2558428232060422774->8461053343454435385 -2558428232060422774->-4299842363929878155 2479242742145154059 chip.call_peak -2558428232060422774->2479242742145154059 -5832094430334924580 chip.macs2_signal_track -2558428232060422774->-5832094430334924580 3583538875220185958 chip.call_peak -2558428232060422774->3583538875220185958 740733514312796870 chip.macs2_signal_track -2558428232060422774->740733514312796870 251032512978899574 chip.call_peak -2558428232060422774->251032512978899574 -6036318033925693129 chip.macs2_signal_track -2558428232060422774->-6036318033925693129 -2558428232060422774->-534093512880753985 -2558428232060422774->-5255822262532150256 -2558428232060422774->-6625909150491895017 -2558428232060422774->-1213843122010243389 -2558428232060422774->-2629708804855287376 -2558428232060422774->-1996086729641694682 -2558428232060422774->-7397629989147364314 4518113590836538178 chip.reproducibility_overlap -2558428232060422774->4518113590836538178 -8550799999485428700 chip.reproducibility_idr -2558428232060422774->-8550799999485428700 -2558428232060422774->-8638289995265584845 4591493198243919304 Peak (bfilt) 2479242742145154059->4591493198243919304 472886183424179501 Peak 2479242742145154059->472886183424179501 472886183424179501->-5255822262532150256 472886183424179501->-6625909150491895017 472886183424179501->-2629708804855287376 472886183424179501->-1996086729641694682 472886183424179501->4518113590836538178 472886183424179501->-8550799999485428700 -5523202851619359293 chip.bam2ta -4463402457820126819 TAG-ALIGN -5523202851619359293->-4463402457820126819 -4463402457820126819->-1934737577473332653 -4463402457820126819->2479242742145154059 -4463402457820126819->-5832094430334924580 -4463402457820126819->3583538875220185958 -4463402457820126819->740733514312796870 -4463402457820126819->251032512978899574 -4463402457820126819->-6036318033925693129 -4463402457820126819->-534093512880753985 -4463402457820126819->4518113590836538178 -4463402457820126819->-8550799999485428700 -4463402457820126819->-8638289995265584845 4977306102198897848 chip.filter 4313710014314821524 SAMstats QC 4977306102198897848->4313710014314821524 -7844720775189626901 Filt/deduped BAM 4977306102198897848->-7844720775189626901 -316086142354161099 LibCmplx QC 4977306102198897848->-316086142354161099 -7844720775189626901->-5523202851619359293 -4633058592850201624 chip.jsd -7844720775189626901->-4633058592850201624 -5597511623440529260 chip.align 716797344754783262 SAMstats QC -5597511623440529260->716797344754783262 -7221232776366531706 BAM -5597511623440529260->-7221232776366531706 -7221232776366531706->4977306102198897848 -8485883632885850847 chip.xcor 5482416545685107389 XCOR Plot -8485883632885850847->5482416545685107389 -3513439429330960335 BW FC -5832094430334924580->-3513439429330960335 -1175148262705580885 BW p-val -5832094430334924580->-1175148262705580885 -6937307671475781592 FASTQ R1 (1) -6937307671475781592->-5597511623440529260 -6937307671475781592->-8485883632885850847 2902352648832874087 Peak (bfilt) 3583538875220185958->2902352648832874087 5298688620316779336 Peak 3583538875220185958->5298688620316779336 5298688620316779336->-5255822262532150256 5298688620316779336->-1213843122010243389 5298688620316779336->-2629708804855287376 5298688620316779336->-7397629989147364314 5298688620316779336->4518113590836538178 5298688620316779336->-8550799999485428700 1754419795990905149 chip.bam2ta -7473421105061308321 TAG-ALIGN 1754419795990905149->-7473421105061308321 -7473421105061308321->-1934737577473332653 -7473421105061308321->2479242742145154059 -7473421105061308321->-5832094430334924580 -7473421105061308321->3583538875220185958 -7473421105061308321->740733514312796870 -7473421105061308321->251032512978899574 -7473421105061308321->-6036318033925693129 -7473421105061308321->-534093512880753985 -7473421105061308321->4518113590836538178 -7473421105061308321->-8550799999485428700 -7473421105061308321->-8638289995265584845 -1040960002913408594 chip.filter -3371963400627057042 SAMstats QC -1040960002913408594->-3371963400627057042 -527624014431559924 Filt/deduped BAM -1040960002913408594->-527624014431559924 8759773669003351792 LibCmplx QC -1040960002913408594->8759773669003351792 -527624014431559924->1754419795990905149 -527624014431559924->-4633058592850201624 -7712414942895468985 chip.align 7911194213904549053 SAMstats QC -7712414942895468985->7911194213904549053 -6694442490480993942 BAM -7712414942895468985->-6694442490480993942 -6694442490480993942->-1040960002913408594 -426502612286736189 chip.xcor 2912822182748189595 XCOR 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5542736453005440576 TAG-ALIGN 3933357657033970668->5542736453005440576 5542736453005440576->2479242742145154059 5542736453005440576->-5832094430334924580 5542736453005440576->3583538875220185958 5542736453005440576->740733514312796870 5542736453005440576->251032512978899574 5542736453005440576->-6036318033925693129 5542736453005440576->-3306801024938485092 5542736453005440576->4518113590836538178 5542736453005440576->-8550799999485428700 8799007337237173678 chip.filter_ctl -7988215599332735499 SAMstats QC 8799007337237173678->-7988215599332735499 6187678368918187093 Filt/deduped BAM 8799007337237173678->6187678368918187093 -8397385576870115022 LibCmplx QC 8799007337237173678->-8397385576870115022 6187678368918187093->3933357657033970668 6187678368918187093->-4633058592850201624 -5218569532530037061 chip.align_ctl -4333156108064383018 BAM -5218569532530037061->-4333156108064383018 8471216017696545238 SAMstats QC -5218569532530037061->8471216017696545238 -4333156108064383018->8799007337237173678 20534029253451585 FASTQ R1 (1) 20534029253451585->-5218569532530037061 5480087475400291153 IDR Plot ppr -534093512880753985->5480087475400291153 -7909655868642454907 IDR Peak ppr -534093512880753985->-7909655868642454907 -7909655868642454907->-8550799999485428700 -798633066338501261 IDR Plot rep1_vs_rep2 -5255822262532150256->-798633066338501261 -8984471339540916435 IDR NPeak rep1_vs_rep2 -5255822262532150256->-8984471339540916435 -8984471339540916435->-8550799999485428700 3543608181637564313 IDR Plot rep1_vs_rep3 -6625909150491895017->3543608181637564313 2897630949446007390 IDR NPeak rep1_vs_rep3 -6625909150491895017->2897630949446007390 2897630949446007390->-8550799999485428700 2675490612092804586 IDR Plot rep2_vs_rep3 -1213843122010243389->2675490612092804586 3386135036300295976 IDR NPeak rep2_vs_rep3 -1213843122010243389->3386135036300295976 3386135036300295976->-8550799999485428700 4599582322068129098 Overlap Peak rep1_vs_rep2 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