<?xml version='1.0' encoding='UTF-8' standalone='yes'?>
<tomtom version="5.0.1" release="Thu Jul 26 17:15:19 2018 -0700">
  <model>
    <command_line>tomtom -no-ssc -oc /srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019/task_80-naivegw/cisbp_tomtomout/m0_p4 -verbosity 1 -min-overlap 5 -mi 1 -dist pearson -evalue -thresh 10.0 /srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019/task_80-naivegw/cisbp_tomtomout/query_file /mnt/lab_data/kundaje/msharmin/annotations/Mus_musculus.meme</command_line>
    <distance_measure value="pearson"/>
    <threshold type="evalue">10</threshold>
    <alphabet name="DNA" like="dna">
      <letter id="A" symbol="A" complement="T" name="Adenine" colour="CC0000"/>
      <letter id="C" symbol="C" complement="G" name="Cytosine" colour="0000CC"/>
      <letter id="G" symbol="G" complement="C" name="Guanine" colour="FFB300"/>
      <letter id="T" symbol="T" aliases="U" complement="A" name="Thymine" colour="008000"/>
      <letter id="N" symbol="N" aliases="X." equals="ACGT" name="Any base"/>
      <letter id="V" symbol="V" equals="ACG" name="Not T"/>
      <letter id="H" symbol="H" equals="ACT" name="Not G"/>
      <letter id="D" symbol="D" equals="AGT" name="Not C"/>
      <letter id="B" symbol="B" equals="CGT" name="Not A"/>
      <letter id="M" symbol="M" equals="AC" name="Amino"/>
      <letter id="R" symbol="R" equals="AG" name="Purine"/>
      <letter id="W" symbol="W" equals="AT" name="Weak"/>
      <letter id="S" symbol="S" equals="CG" name="Strong"/>
      <letter id="Y" symbol="Y" equals="CT" name="Pyrimidine"/>
      <letter id="K" symbol="K" equals="GT" name="Keto"/>
    </alphabet>
    <strands>both</strands>
    <background from="--query--" A="0.27" C="0.23" G="0.23" T="0.27"/>
    <host>kali.stanford.edu</host>
    <when>Sat Jul  6 22:44:44 2019</when>
  </model>
  <query_dbs>
    <db source="/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019/task_80-naivegw/cisbp_tomtomout/query_file" name="query_file" loaded="1" excluded="0" last_mod_date="Sat Jul  6 22:44:44 2019"/>
  </query_dbs>
  <target_dbs>
    <db source="/mnt/lab_data/kundaje/msharmin/annotations/Mus_musculus.meme" name="Mus_musculus" loaded="718" excluded="0" last_mod_date="Wed Sep 14 11:58:32 2016"/>
  </target_dbs>
  <queries>
    <motif db="0" id="1" alt="TEMP" length="5" nsites="1">
      <pos A="0.8223" C="0.0651455" G="0.0467182" T="0.0658364"/>
      <pos A="0.0518275" C="0.0231182" G="0.0386002" T="0.886454"/>
      <pos A="0.0474" C="0.0304909" G="0.8688" T="0.0533"/>
      <pos A="0.0813182" C="0.0459818" G="0.828991" T="0.0437182"/>
      <pos A="0.537709" C="0.173527" G="0.153627" T="0.135136"/>
    </motif>
  </queries>
  <targets>
    <motif db="0" id="M1519_1.02" alt="(Nfat5)_(Gallus_gallus)_(DBD_1.00)" length="10" nsites="1"
        url="http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=T138265_1.02">
      <pos A="0.36225" C="0.211371" G="0.211371" T="0.215007"/>
      <pos A="0.184597" C="0.100484" G="0.100484" T="0.614435"/>
      <pos A="0.0246554" C="0.0210191" G="0.0210191" T="0.933306"/>
      <pos A="0.0246554" C="0.0210191" G="0.0210191" T="0.933306"/>
      <pos A="0.105133" C="0.0972582" G="0.0210191" T="0.77659"/>
      <pos A="0.0246554" C="0.852525" G="0.0210191" T="0.1018"/>
      <pos A="0.0246554" C="0.772048" G="0.0981636" T="0.105133"/>
      <pos A="0.779923" C="0.0972582" G="0.0210191" T="0.1018"/>
      <pos A="0.137705" C="0.281868" G="0.05783" T="0.522597"/>
      <pos A="0.267743" C="0.168717" G="0.246464" T="0.317077"/>
    </motif>
    <motif db="0" id="M1521_1.02" alt="(Nfatc1)_(Monodelphis_domestica)_(DBD_0.98)" length="10" nsites="1"
        url="http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=T138273_1.02">
      <pos A="0.317245" C="0.18316" G="0.207543" T="0.292053"/>
      <pos A="0.252406" C="0.207465" G="0.223004" T="0.317125"/>
      <pos A="0.221437" C="0.128965" G="0.195536" T="0.45406"/>
      <pos A="0.138099" C="0.112038" G="0.0911746" T="0.658689"/>
      <pos A="0.134202" C="0.0523264" G="0.0915318" T="0.72194"/>
      <pos A="0.1461" C="0.706558" G="0.08762" T="0.0597218"/>
      <pos A="0.0897882" C="0.691465" G="0.0765046" T="0.142242"/>
      <pos A="0.380743" C="0.128194" G="0.309637" T="0.181426"/>
      <pos A="0.244905" C="0.264445" G="0.194251" T="0.296399"/>
      <pos A="0.23804" C="0.24535" G="0.226033" T="0.290576"/>
    </motif>
    <motif db="0" id="M1956_1.02" alt="(Rest)_(Homo_sapiens)_(DBD_0.98)" length="21" nsites="1"
        url="http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=T049134_1.02">
      <pos A="0.14511" C="0.120332" G="0.23004" T="0.504518"/>
      <pos A="0.0575618" C="0.174037" G="0.104019" T="0.664382"/>
      <pos A="0.0678082" C="0.798504" G="0.0493718" T="0.0843164"/>
      <pos A="0.848515" C="0.0379336" G="0.0742518" T="0.0393"/>
      <pos A="0.0438154" C="0.0458464" G="0.880125" T="0.0302127"/>
      <pos A="0.0936473" C="0.57486" G="0.20386" T="0.127633"/>
      <pos A="0.916088" C="0.0248718" G="0.0277018" T="0.0313382"/>
      <pos A="0.0262436" C="0.918679" G="0.0277018" T="0.0273754"/>
      <pos A="0.0443573" C="0.859243" G="0.03223" T="0.06417"/>
      <pos A="0.541679" C="0.134758" G="0.112668" T="0.210895"/>
      <pos A="0.148667" C="0.233446" G="0.0911882" T="0.526699"/>
      <pos A="0.0466491" C="0.0248764" G="0.899962" T="0.0285127"/>
      <pos A="0.0358809" C="0.0237427" G="0.914697" T="0.0256791"/>
      <pos A="0.821914" C="0.0844264" G="0.0401909" T="0.0534682"/>
      <pos A="0.0319318" C="0.748182" G="0.153295" T="0.0665909"/>
      <pos A="0.918864" C="0.0260227" G="0.0248864" T="0.0302273"/>
      <pos A="0.0484991" C="0.0283236" G="0.893499" T="0.0296782"/>
      <pos A="0.141535" C="0.595583" G="0.125344" T="0.13754"/>
      <pos A="0.233545" C="0.0386109" G="0.413783" T="0.314061"/>
      <pos A="0.146329" C="0.554356" G="0.203299" T="0.0960145"/>
      <pos A="0.12689" C="0.657845" G="0.0420636" T="0.173202"/>
    </motif>
    <motif db="0" id="M6124_1.02" alt="Sox17" length="11" nsites="1"
        url="http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=T144595_1.02">
      <pos A="0.157381" C="0.253371" G="0.257522" T="0.331727"/>
      <pos A="0.136625" C="0.21186" G="0.228465" T="0.423051"/>
      <pos A="0.0245454" C="0.593761" G="0.166197" T="0.215496"/>
      <pos A="0.0245454" C="0.668481" G="0.0209091" T="0.286065"/>
      <pos A="0.692873" C="0.0209091" G="0.0209091" T="0.265309"/>
      <pos A="0.0245454" C="0.0209091" G="0.0375136" T="0.917032"/>
      <pos A="0.0245454" C="0.0209091" G="0.0209091" T="0.933636"/>
      <pos A="0.0245454" C="0.09978" G="0.822072" T="0.0536027"/>
      <pos A="0.0245454" C="0.0209091" G="0.0209091" T="0.933636"/>
      <pos A="0.0245454" C="0.307335" G="0.216011" T="0.452109"/>
      <pos A="0.0992654" C="0.307335" G="0.0209091" T="0.572491"/>
    </motif>
    <motif db="0" id="M6295_1.02" alt="(Hoxb1)_(Homo_sapiens)_(DBD_1.00)" length="10" nsites="1"
        url="http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=T095101_1.02">
      <pos A="0.0245454" C="0.805562" G="0.0831282" T="0.0867645"/>
      <pos A="0.0245454" C="0.774452" G="0.176457" T="0.0245454"/>
      <pos A="0.933636" C="0.0209091" G="0.0209091" T="0.0245454"/>
      <pos A="0.0245454" C="0.0209091" G="0.0209091" T="0.933636"/>
      <pos A="0.0245454" C="0.93" G="0.0209091" T="0.0245454"/>
      <pos A="0.366751" C="0.587795" G="0.0209091" T="0.0245454"/>
      <pos A="0.933636" C="0.0209091" G="0.0209091" T="0.0245454"/>
      <pos A="0.0245454" C="0.0209091" G="0.0209091" T="0.933636"/>
      <pos A="0.0245454" C="0.93" G="0.0209091" T="0.0245454"/>
      <pos A="0.591431" C="0.0831282" G="0.0209091" T="0.304532"/>
    </motif>
    <motif db="0" id="M6478_1.02" alt="(Sox9)_(Homo_sapiens)_(DBD_1.00)" length="11" nsites="1"
        url="http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=T144581_1.02">
      <pos A="0.564169" C="0.128935" G="0.129454" T="0.177443"/>
      <pos A="0.306455" C="0.0591318" G="0.522303" T="0.112111"/>
      <pos A="0.788838" C="0.0709736" G="0.0517609" T="0.0884273"/>
      <pos A="0.903102" C="0.0209091" G="0.0255827" T="0.0504073"/>
      <pos A="0.0245454" C="0.922832" G="0.0209091" T="0.0317136"/>
      <pos A="0.907457" C="0.0209091" G="0.0399191" T="0.0317136"/>
      <pos A="0.90476" C="0.03327" G="0.0255827" T="0.0363873"/>
      <pos A="0.11501" C="0.0209091" G="0.0209091" T="0.843172"/>
      <pos A="0.307292" C="0.0327509" G="0.599886" T="0.0600709"/>
      <pos A="0.159579" C="0.116365" G="0.678323" T="0.0457336"/>
      <pos A="0.336244" C="0.159654" G="0.36418" T="0.139924"/>
    </motif>
  </targets>
  <matches>
    <query idx="0">
      <target idx="0" rc="y" off="1" pv="2.35e-03" ev="1.69e+00" qv="1.00e+00"/>
      <target idx="4" rc="y" off="2" pv="2.69e-03" ev="1.93e+00" qv="1.00e+00"/>
      <target idx="2" rc="n" off="9" pv="2.97e-03" ev="2.13e+00" qv="1.00e+00"/>
      <target idx="3" rc="y" off="5" pv="3.93e-03" ev="2.82e+00" qv="1.00e+00"/>
      <target idx="1" rc="y" off="1" pv="8.75e-03" ev="6.28e+00" qv="1.00e+00"/>
      <target idx="5" rc="n" off="6" pv="1.26e-02" ev="9.03e+00" qv="1.00e+00"/>
    </query>
  </matches>
  <runtime cycles="316000" seconds="0.316"/>
</tomtom>
