<?xml version='1.0' encoding='UTF-8' standalone='yes'?>
<tomtom version="5.0.1" release="Thu Jul 26 17:15:19 2018 -0700">
  <model>
    <command_line>tomtom -no-ssc -oc /srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019/task_32-naivegw/cisbp_tomtomout/m0_p11 -verbosity 1 -min-overlap 5 -mi 1 -dist pearson -evalue -thresh 10.0 /srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019/task_32-naivegw/cisbp_tomtomout/query_file /mnt/lab_data/kundaje/msharmin/annotations/Mus_musculus.meme</command_line>
    <distance_measure value="pearson"/>
    <threshold type="evalue">10</threshold>
    <alphabet name="DNA" like="dna">
      <letter id="A" symbol="A" complement="T" name="Adenine" colour="CC0000"/>
      <letter id="C" symbol="C" complement="G" name="Cytosine" colour="0000CC"/>
      <letter id="G" symbol="G" complement="C" name="Guanine" colour="FFB300"/>
      <letter id="T" symbol="T" aliases="U" complement="A" name="Thymine" colour="008000"/>
      <letter id="N" symbol="N" aliases="X." equals="ACGT" name="Any base"/>
      <letter id="V" symbol="V" equals="ACG" name="Not T"/>
      <letter id="H" symbol="H" equals="ACT" name="Not G"/>
      <letter id="D" symbol="D" equals="AGT" name="Not C"/>
      <letter id="B" symbol="B" equals="CGT" name="Not A"/>
      <letter id="M" symbol="M" equals="AC" name="Amino"/>
      <letter id="R" symbol="R" equals="AG" name="Purine"/>
      <letter id="W" symbol="W" equals="AT" name="Weak"/>
      <letter id="S" symbol="S" equals="CG" name="Strong"/>
      <letter id="Y" symbol="Y" equals="CT" name="Pyrimidine"/>
      <letter id="K" symbol="K" equals="GT" name="Keto"/>
    </alphabet>
    <strands>both</strands>
    <background from="--query--" A="0.27" C="0.23" G="0.23" T="0.27"/>
    <host>kali.stanford.edu</host>
    <when>Sat Jul  6 05:22:31 2019</when>
  </model>
  <query_dbs>
    <db source="/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019/task_32-naivegw/cisbp_tomtomout/query_file" name="query_file" loaded="1" excluded="0" last_mod_date="Sat Jul  6 05:22:31 2019"/>
  </query_dbs>
  <target_dbs>
    <db source="/mnt/lab_data/kundaje/msharmin/annotations/Mus_musculus.meme" name="Mus_musculus" loaded="718" excluded="0" last_mod_date="Wed Sep 14 11:58:32 2016"/>
  </target_dbs>
  <queries>
    <motif db="0" id="1" alt="TEMP" length="7" nsites="1">
      <pos A="0.0629" C="0.0324182" G="0.0324182" T="0.872264"/>
      <pos A="0.0360545" C="0.0247455" G="0.914655" T="0.0245454"/>
      <pos A="0.0360545" C="0.0209091" G="0.0209091" T="0.922127"/>
      <pos A="0.0245454" C="0.0209091" G="0.93" T="0.0245454"/>
      <pos A="0.0398909" C="0.0247455" G="0.899309" T="0.0360545"/>
      <pos A="0.0667364" C="0.155164" G="0.139818" T="0.638282"/>
      <pos A="0.1588" C="0.155164" G="0.120636" T="0.5654"/>
    </motif>
  </queries>
  <targets>
    <motif db="0" id="M1029_1.02" alt="Nkx2-6" length="10" nsites="1"
        url="http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=T095224_1.02">
      <pos A="0.221096" C="0.160808" G="0.110113" T="0.507983"/>
      <pos A="0.105615" C="0.315419" G="0.140648" T="0.438317"/>
      <pos A="0.754772" C="0.0245909" G="0.168339" T="0.0522991"/>
      <pos A="0.905503" C="0.0212227" G="0.0364118" T="0.0368627"/>
      <pos A="0.04198" C="0.0210364" G="0.848464" T="0.0885191"/>
      <pos A="0.124752" C="0.0428255" G="0.0748146" T="0.757608"/>
      <pos A="0.276084" C="0.03028" G="0.645811" T="0.0478254"/>
      <pos A="0.0914754" C="0.31493" G="0.406065" T="0.187529"/>
      <pos A="0.201112" C="0.284315" G="0.204682" T="0.30989"/>
      <pos A="0.188823" C="0.273445" G="0.195345" T="0.342387"/>
    </motif>
    <motif db="0" id="M1837_1.02" alt="Runx1" length="11" nsites="1"
        url="http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=T139321_1.02">
      <pos A="0.503182" C="0.152273" G="0.0927273" T="0.251818"/>
      <pos A="0.626818" C="0.0577273" G="0.231364" T="0.0840909"/>
      <pos A="0.633182" C="0.135" G="0.202727" T="0.0290909"/>
      <pos A="0.0668182" C="0.860909" G="0.04" T="0.0322727"/>
      <pos A="0.0304545" C="0.924091" G="0.0209091" T="0.0245454"/>
      <pos A="0.804545" C="0.0527273" G="0.0786364" T="0.0640909"/>
      <pos A="0.0486364" C="0.871818" G="0.055" T="0.0245454"/>
      <pos A="0.904545" C="0.0240909" G="0.0209091" T="0.0504545"/>
      <pos A="0.322727" C="0.0886364" G="0.508182" T="0.0804545"/>
      <pos A="0.394545" C="0.233182" G="0.241364" T="0.130909"/>
      <pos A="0.261364" C="0.337273" G="0.246364" T="0.155"/>
    </motif>
    <motif db="0" id="M1950_1.02" alt="(Zfp354c)_(Homo_sapiens)_(DBD_0.89)" length="6" nsites="1"
        url="http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=T049246_1.02">
      <pos A="0.0245454" C="0.0777273" G="0.873182" T="0.0245454"/>
      <pos A="0.0245454" C="0.0209091" G="0.0209091" T="0.933636"/>
      <pos A="0.0245454" C="0.0209091" G="0.93" T="0.0245454"/>
      <pos A="0.0245454" C="0.0209091" G="0.93" T="0.0245454"/>
      <pos A="0.649545" C="0.0209091" G="0.134545" T="0.195"/>
      <pos A="0.0245454" C="0.191364" G="0.361818" T="0.422273"/>
    </motif>
    <motif db="0" id="M1964_1.02" alt="Myc" length="10" nsites="1"
        url="http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=T015164_1.02">
      <pos A="0.225789" C="0.642874" G="0.106791" T="0.0245454"/>
      <pos A="0.0245454" C="0.93" G="0.0209091" T="0.0245454"/>
      <pos A="0.933636" C="0.0209091" G="0.0209091" T="0.0245454"/>
      <pos A="0.0245454" C="0.41198" G="0.0209091" T="0.542565"/>
      <pos A="0.0245454" C="0.0209091" G="0.93" T="0.0245454"/>
      <pos A="0.0245454" C="0.0209091" G="0.0209091" T="0.933636"/>
      <pos A="0.0245454" C="0.0209091" G="0.93" T="0.0245454"/>
      <pos A="0.0328954" C="0.412321" G="0.375515" T="0.17927"/>
      <pos A="0.169045" C="0.206135" G="0.115652" T="0.509166"/>
      <pos A="0.0385182" C="0.340753" G="0.157401" T="0.463329"/>
    </motif>
    <motif db="0" id="M2281_1.02" alt="(Foxh1)_(Homo_sapiens)_(DBD_0.96)" length="11" nsites="1"
        url="http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=T081979_1.02">
      <pos A="0.128508" C="0.335343" G="0.185876" T="0.350273"/>
      <pos A="0.199255" C="0.27921" G="0.25751" T="0.264025"/>
      <pos A="0.132273" C="0.381955" G="0.370329" T="0.115444"/>
      <pos A="0.933636" C="0.0209091" G="0.0209091" T="0.0245454"/>
      <pos A="0.860121" C="0.0209091" G="0.0462627" T="0.0727073"/>
      <pos A="0.0245454" C="0.0209091" G="0.0209091" T="0.933636"/>
      <pos A="0.287385" C="0.660074" G="0.0209091" T="0.0316309"/>
      <pos A="0.181098" C="0.773447" G="0.0209091" T="0.0245454"/>
      <pos A="0.933636" C="0.0209091" G="0.0209091" T="0.0245454"/>
      <pos A="0.0245454" C="0.93" G="0.0209091" T="0.0245454"/>
      <pos A="0.814838" C="0.0209091" G="0.0209091" T="0.143344"/>
    </motif>
    <motif db="0" id="M2285_1.02" alt="Gfi1b" length="11" nsites="1"
        url="http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=T049116_1.02">
      <pos A="0.260982" C="0.08802" G="0.244439" T="0.40656"/>
      <pos A="0.135536" C="0.0601427" G="0.70647" T="0.0978509"/>
      <pos A="0.0384836" C="0.88612" G="0.0214255" T="0.0539709"/>
      <pos A="0.357001" C="0.0214255" G="0.0209091" T="0.600665"/>
      <pos A="0.0245454" C="0.221208" G="0.69821" T="0.0560354"/>
      <pos A="0.389524" C="0.0209091" G="0.03175" T="0.557817"/>
      <pos A="0.0245454" C="0.0209091" G="0.93" T="0.0245454"/>
      <pos A="0.744695" C="0.0353636" G="0.195396" T="0.0245454"/>
      <pos A="0.0245454" C="0.0219418" G="0.0209091" T="0.932604"/>
      <pos A="0.0245454" C="0.0209091" G="0.0209091" T="0.933636"/>
      <pos A="0.0735882" C="0.0745973" G="0.24702" T="0.604795"/>
    </motif>
    <motif db="0" id="M2294_1.02" alt="Klf1" length="11" nsites="1"
        url="http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=T049348_1.02">
      <pos A="0.389219" C="0.0209091" G="0.0814" T="0.508472"/>
      <pos A="0.0556554" C="0.0209091" G="0.89889" T="0.0245454"/>
      <pos A="0.0245454" C="0.0209091" G="0.93" T="0.0245454"/>
      <pos A="0.0245454" C="0.0209091" G="0.93" T="0.0245454"/>
      <pos A="0.0746664" C="0.188555" G="0.0209091" T="0.715869"/>
      <pos A="0.0245454" C="0.0209091" G="0.93" T="0.0245454"/>
      <pos A="0.0314591" C="0.0209091" G="0.22485" T="0.722783"/>
      <pos A="0.114417" C="0.0209091" G="0.81766" T="0.0470136"/>
      <pos A="0.0781227" C="0.0762155" G="0.70532" T="0.140342"/>
      <pos A="0.0487418" C="0.548044" G="0.0900418" T="0.313173"/>
      <pos A="0.19392" C="0.370027" G="0.152261" T="0.283792"/>
    </motif>
    <motif db="0" id="M2310_1.02" alt="(Runx2)_(Homo_sapiens)_(DBD_1.00)" length="15" nsites="1"
        url="http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=T139322_1.02">
      <pos A="0.32244" C="0.416389" G="0.128767" T="0.132404"/>
      <pos A="0.583525" C="0.14332" G="0.0277573" T="0.245398"/>
      <pos A="0.599789" C="0.15616" G="0.183553" T="0.0604982"/>
      <pos A="0.7436" C="0.0979509" G="0.133904" T="0.0245454"/>
      <pos A="0.0262573" C="0.928288" G="0.0209091" T="0.0245454"/>
      <pos A="0.0245454" C="0.93" G="0.0209091" T="0.0245454"/>
      <pos A="0.918228" C="0.0209091" G="0.0234773" T="0.0373854"/>
      <pos A="0.0510818" C="0.902607" G="0.0217655" T="0.0245454"/>
      <pos A="0.913092" C="0.0303255" G="0.0243327" T="0.03225"/>
      <pos A="0.420025" C="0.134759" G="0.356468" T="0.0887464"/>
      <pos A="0.485083" C="0.230634" G="0.153592" T="0.130692"/>
      <pos A="0.274503" C="0.42923" G="0.168145" T="0.128124"/>
      <pos A="0.372089" C="0.385573" G="0.0885346" T="0.153805"/>
      <pos A="0.310455" C="0.400981" G="0.122775" T="0.165788"/>
      <pos A="0.355825" C="0.400125" G="0.134759" T="0.109291"/>
    </motif>
    <motif db="0" id="M5804_1.02" alt="(Scrt1)_(Homo_sapiens)_(DBD_1.00)" length="15" nsites="1"
        url="http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=T049286_1.02">
      <pos A="0.348632" C="0.135575" G="0.415032" T="0.100761"/>
      <pos A="0.380619" C="0.180827" G="0.0910209" T="0.347533"/>
      <pos A="0.0382573" C="0.0391918" G="0.660792" T="0.261759"/>
      <pos A="0.0288536" C="0.911535" G="0.0227555" T="0.0368554"/>
      <pos A="0.885096" C="0.0497036" G="0.0209091" T="0.04429"/>
      <pos A="0.933636" C="0.0209091" G="0.0209091" T="0.0245454"/>
      <pos A="0.0251509" C="0.929395" G="0.0209091" T="0.0245454"/>
      <pos A="0.933636" C="0.0209091" G="0.0209091" T="0.0245454"/>
      <pos A="0.128661" C="0.0225527" G="0.821501" T="0.0272854"/>
      <pos A="0.0245454" C="0.0209091" G="0.928885" T="0.02566"/>
      <pos A="0.0245454" C="0.0232991" G="0.0225027" T="0.929653"/>
      <pos A="0.104408" C="0.04269" G="0.696115" T="0.156786"/>
      <pos A="0.0913336" C="0.125175" G="0.517738" T="0.265753"/>
      <pos A="0.160112" C="0.239845" G="0.236945" T="0.363098"/>
      <pos A="0.223686" C="0.255585" G="0.108265" T="0.412464"/>
    </motif>
    <motif db="0" id="M6323_1.02" alt="(Klf3)_(Homo_sapiens)_(DBD_1.00)" length="15" nsites="1"
        url="http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=T049133_1.02">
      <pos A="0.322841" C="0.262386" G="0.0209091" T="0.393864"/>
      <pos A="0.379659" C="0.14875" G="0.447045" T="0.0245454"/>
      <pos A="0.0245454" C="0.745341" G="0.134545" T="0.0955682"/>
      <pos A="0.152386" C="0.376023" G="0.134545" T="0.337045"/>
      <pos A="0.337045" C="0.0209091" G="0.134545" T="0.5075"/>
      <pos A="0.152386" C="0.0209091" G="0.802159" T="0.0245454"/>
      <pos A="0.0245454" C="0.0209091" G="0.802159" T="0.152386"/>
      <pos A="0.0245454" C="0.0209091" G="0.93" T="0.0245454"/>
      <pos A="0.0245454" C="0.0209091" G="0.0209091" T="0.933636"/>
      <pos A="0.152386" C="0.0209091" G="0.802159" T="0.0245454"/>
      <pos A="0.0245454" C="0.0209091" G="0.376023" T="0.578523"/>
      <pos A="0.152386" C="0.262386" G="0.560682" T="0.0245454"/>
      <pos A="0.0245454" C="0.134545" G="0.688523" T="0.152386"/>
      <pos A="0.209205" C="0.489659" G="0.14875" T="0.152386"/>
      <pos A="0.241165" C="0.0528691" G="0.0528691" T="0.653096"/>
    </motif>
    <motif db="0" id="M6459_1.02" alt="(Runx3)_(Homo_sapiens)_(DBD_1.00)" length="14" nsites="1"
        url="http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=T139323_1.02">
      <pos A="0.529369" C="0.166746" G="0.160699" T="0.143186"/>
      <pos A="0.875356" C="0.0584709" G="0.0367655" T="0.0294064"/>
      <pos A="0.0269764" C="0.927569" G="0.0209091" T="0.0245454"/>
      <pos A="0.0245454" C="0.93" G="0.0209091" T="0.0245454"/>
      <pos A="0.533111" C="0.0633255" G="0.37109" T="0.0324736"/>
      <pos A="0.0324736" C="0.916574" G="0.02334" T="0.0276127"/>
      <pos A="0.879608" C="0.0335282" G="0.0288373" T="0.0580254"/>
      <pos A="0.757529" C="0.0782855" G="0.0922118" T="0.0719727"/>
      <pos A="0.765666" C="0.0954773" G="0.0415646" T="0.0972918"/>
      <pos A="0.454442" C="0.452273" G="0.0455909" T="0.0476945"/>
      <pos A="0.305454" C="0.620185" G="0.0449546" T="0.0294064"/>
      <pos A="0.263246" C="0.52818" G="0.176736" T="0.0318373"/>
      <pos A="0.218722" C="0.648636" G="0.0889118" T="0.04373"/>
      <pos A="0.348073" C="0.33542" G="0.20097" T="0.115537"/>
    </motif>
  </targets>
  <matches>
    <query idx="0">
      <target idx="1" rc="y" off="3" pv="2.69e-06" ev="1.93e-03" qv="3.47e-03"/>
      <target idx="7" rc="y" off="6" pv="4.84e-06" ev="3.47e-03" qv="3.47e-03"/>
      <target idx="10" rc="y" off="7" pv="1.17e-04" ev="8.38e-02" qv="5.59e-02"/>
      <target idx="3" rc="n" off="3" pv="9.09e-04" ev="6.53e-01" qv="3.26e-01"/>
      <target idx="5" rc="n" off="3" pv="3.79e-03" ev="2.72e+00" qv="9.06e-01"/>
      <target idx="6" rc="n" off="4" pv="3.79e-03" ev="2.72e+00" qv="9.06e-01"/>
      <target idx="4" rc="y" off="0" pv="4.73e-03" ev="3.40e+00" qv="9.70e-01"/>
      <target idx="8" rc="n" off="8" pv="9.51e-03" ev="6.83e+00" qv="1.00e+00"/>
      <target idx="0" rc="n" off="3" pv="1.08e-02" ev="7.79e+00" qv="1.00e+00"/>
      <target idx="2" rc="n" off="-1" pv="1.09e-02" ev="7.80e+00" qv="1.00e+00"/>
      <target idx="9" rc="n" off="8" pv="1.15e-02" ev="8.28e+00" qv="1.00e+00"/>
    </query>
  </matches>
  <runtime cycles="396000" seconds="0.396"/>
</tomtom>
