<?xml version='1.0' encoding='UTF-8' standalone='yes'?>
<tomtom version="5.0.1" release="Thu Jul 26 17:15:19 2018 -0700">
  <model>
    <command_line>tomtom -no-ssc -oc /srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019/task_262-naivegw/cisbp_tomtomout/m1_p22 -verbosity 1 -min-overlap 5 -mi 1 -dist pearson -evalue -thresh 10.0 /srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019/task_262-naivegw/cisbp_tomtomout/query_file /mnt/lab_data/kundaje/msharmin/annotations/Mus_musculus.meme</command_line>
    <distance_measure value="pearson"/>
    <threshold type="evalue">10</threshold>
    <alphabet name="DNA" like="dna">
      <letter id="A" symbol="A" complement="T" name="Adenine" colour="CC0000"/>
      <letter id="C" symbol="C" complement="G" name="Cytosine" colour="0000CC"/>
      <letter id="G" symbol="G" complement="C" name="Guanine" colour="FFB300"/>
      <letter id="T" symbol="T" aliases="U" complement="A" name="Thymine" colour="008000"/>
      <letter id="N" symbol="N" aliases="X." equals="ACGT" name="Any base"/>
      <letter id="V" symbol="V" equals="ACG" name="Not T"/>
      <letter id="H" symbol="H" equals="ACT" name="Not G"/>
      <letter id="D" symbol="D" equals="AGT" name="Not C"/>
      <letter id="B" symbol="B" equals="CGT" name="Not A"/>
      <letter id="M" symbol="M" equals="AC" name="Amino"/>
      <letter id="R" symbol="R" equals="AG" name="Purine"/>
      <letter id="W" symbol="W" equals="AT" name="Weak"/>
      <letter id="S" symbol="S" equals="CG" name="Strong"/>
      <letter id="Y" symbol="Y" equals="CT" name="Pyrimidine"/>
      <letter id="K" symbol="K" equals="GT" name="Keto"/>
    </alphabet>
    <strands>both</strands>
    <background from="--query--" A="0.27" C="0.23" G="0.23" T="0.27"/>
    <host>kali.stanford.edu</host>
    <when>Tue Jul  9 17:51:20 2019</when>
  </model>
  <query_dbs>
    <db source="/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019/task_262-naivegw/cisbp_tomtomout/query_file" name="query_file" loaded="1" excluded="0" last_mod_date="Tue Jul  9 17:51:20 2019"/>
  </query_dbs>
  <target_dbs>
    <db source="/mnt/lab_data/kundaje/msharmin/annotations/Mus_musculus.meme" name="Mus_musculus" loaded="718" excluded="0" last_mod_date="Wed Sep 14 11:58:32 2016"/>
  </target_dbs>
  <queries>
    <motif db="0" id="1" alt="TEMP" length="48" nsites="1">
      <pos A="0.124173" C="0.207709" G="0.506591" T="0.161527"/>
      <pos A="0.236255" C="0.220164" G="0.294882" T="0.248709"/>
      <pos A="0.173982" C="0.220164" G="0.3696" T="0.236255"/>
      <pos A="0.111719" C="0.357149" G="0.344694" T="0.186438"/>
      <pos A="0.173982" C="0.257518" G="0.245073" T="0.323427"/>
      <pos A="0.161529" C="0.157892" G="0.332249" T="0.348331"/>
      <pos A="0.0743545" C="0.0831727" G="0.693391" T="0.149082"/>
      <pos A="0.0868091" C="0.108082" G="0.693391" T="0.111718"/>
      <pos A="0.423055" C="0.357145" G="0.0458182" T="0.173982"/>
      <pos A="0.0992644" C="0.0707187" G="0.705843" T="0.124174"/>
      <pos A="0.0494545" C="0.830373" G="0.0333636" T="0.0868091"/>
      <pos A="0.037" C="0.0458182" G="0.0831727" T="0.834009"/>
      <pos A="0.0494545" C="0.120536" G="0.793018" T="0.037"/>
      <pos A="0.111718" C="0.0333636" G="0.0956273" T="0.759291"/>
      <pos A="0.0494545" C="0.867736" G="0.0209091" T="0.0619091"/>
      <pos A="0.0868091" C="0.830373" G="0.0333636" T="0.0494545"/>
      <pos A="0.398145" C="0.0956273" G="0.382055" T="0.124173"/>
      <pos A="0.186436" C="0.132991" G="0.220164" T="0.460409"/>
      <pos A="0.0619091" C="0.0458182" G="0.830373" T="0.0619091"/>
      <pos A="0.0619091" C="0.0333636" G="0.867736" T="0.037"/>
      <pos A="0.0494545" C="0.0707182" G="0.0707182" T="0.8091"/>
      <pos A="0.0619091" C="0.1828" G="0.606218" T="0.149082"/>
      <pos A="0.0494545" C="0.855282" G="0.0582727" T="0.037"/>
      <pos A="0.0868091" C="0.0582727" G="0.0582727" T="0.796655"/>
      <pos A="0.111718" C="0.0458182" G="0.805464" T="0.037"/>
      <pos A="0.821555" C="0.0707182" G="0.0707182" T="0.037"/>
      <pos A="0.522682" C="0.207709" G="0.132991" T="0.136627"/>
      <pos A="0.286064" C="0.145445" G="0.419418" T="0.149082"/>
      <pos A="0.186438" C="0.344694" G="0.207711" T="0.261157"/>
      <pos A="0.236255" C="0.195255" G="0.257518" T="0.310973"/>
      <pos A="0.261157" C="0.257521" G="0.307339" T="0.173983"/>
      <pos A="0.186436" C="0.294882" G="0.282427" T="0.236255"/>
      <pos A="0.286064" C="0.257518" G="0.319791" T="0.136627"/>
      <pos A="0.286064" C="0.307336" G="0.220164" T="0.186436"/>
      <pos A="0.211345" C="0.245073" G="0.245073" T="0.298518"/>
      <pos A="0.136627" C="0.294882" G="0.245073" T="0.323427"/>
      <pos A="0.186436" C="0.207709" G="0.282427" T="0.323427"/>
      <pos A="0.198891" C="0.319791" G="0.294882" T="0.186436"/>
      <pos A="0.173982" C="0.294882" G="0.307336" T="0.2238"/>
      <pos A="0.248709" C="0.294882" G="0.1828" T="0.273609"/>
      <pos A="0.211345" C="0.319791" G="0.269973" T="0.198891"/>
      <pos A="0.211345" C="0.245073" G="0.307336" T="0.236255"/>
      <pos A="0.236255" C="0.245073" G="0.207709" T="0.310973"/>
      <pos A="0.261155" C="0.282427" G="0.245073" T="0.211345"/>
      <pos A="0.236255" C="0.257518" G="0.319791" T="0.186436"/>
      <pos A="0.2238" C="0.282427" G="0.269973" T="0.2238"/>
      <pos A="0.173982" C="0.220164" G="0.245073" T="0.360782"/>
      <pos A="0.211345" C="0.207709" G="0.431864" T="0.149082"/>
    </motif>
  </queries>
  <targets>
    <motif db="0" id="M1956_1.02" alt="(Rest)_(Homo_sapiens)_(DBD_0.98)" length="21" nsites="1"
        url="http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=T049134_1.02">
      <pos A="0.14511" C="0.120332" G="0.23004" T="0.504518"/>
      <pos A="0.0575618" C="0.174037" G="0.104019" T="0.664382"/>
      <pos A="0.0678082" C="0.798504" G="0.0493718" T="0.0843164"/>
      <pos A="0.848515" C="0.0379336" G="0.0742518" T="0.0393"/>
      <pos A="0.0438154" C="0.0458464" G="0.880125" T="0.0302127"/>
      <pos A="0.0936473" C="0.57486" G="0.20386" T="0.127633"/>
      <pos A="0.916088" C="0.0248718" G="0.0277018" T="0.0313382"/>
      <pos A="0.0262436" C="0.918679" G="0.0277018" T="0.0273754"/>
      <pos A="0.0443573" C="0.859243" G="0.03223" T="0.06417"/>
      <pos A="0.541679" C="0.134758" G="0.112668" T="0.210895"/>
      <pos A="0.148667" C="0.233446" G="0.0911882" T="0.526699"/>
      <pos A="0.0466491" C="0.0248764" G="0.899962" T="0.0285127"/>
      <pos A="0.0358809" C="0.0237427" G="0.914697" T="0.0256791"/>
      <pos A="0.821914" C="0.0844264" G="0.0401909" T="0.0534682"/>
      <pos A="0.0319318" C="0.748182" G="0.153295" T="0.0665909"/>
      <pos A="0.918864" C="0.0260227" G="0.0248864" T="0.0302273"/>
      <pos A="0.0484991" C="0.0283236" G="0.893499" T="0.0296782"/>
      <pos A="0.141535" C="0.595583" G="0.125344" T="0.13754"/>
      <pos A="0.233545" C="0.0386109" G="0.413783" T="0.314061"/>
      <pos A="0.146329" C="0.554356" G="0.203299" T="0.0960145"/>
      <pos A="0.12689" C="0.657845" G="0.0420636" T="0.173202"/>
    </motif>
    <motif db="0" id="M6155_1.02" alt="(Atf6)_(Homo_sapiens)_(DBD_0.98)" length="12" nsites="1"
        url="http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=T025929_1.02">
      <pos A="0.192377" C="0.188741" G="0.552377" T="0.0665036"/>
      <pos A="0.0245454" C="0.216714" G="0.314615" T="0.444125"/>
      <pos A="0.0245454" C="0.258671" G="0.566364" T="0.15042"/>
      <pos A="0.108462" C="0.384545" G="0.440489" T="0.0665036"/>
      <pos A="0.0245454" C="0.0488809" G="0.0209091" T="0.905665"/>
      <pos A="0.0245454" C="0.0628673" G="0.888042" T="0.0245454"/>
      <pos A="0.863706" C="0.0628673" G="0.0209091" T="0.0525173"/>
      <pos A="0.0245454" C="0.93" G="0.0209091" T="0.0245454"/>
      <pos A="0.0245454" C="0.0209091" G="0.93" T="0.0245454"/>
      <pos A="0.0245454" C="0.0209091" G="0.0209091" T="0.933636"/>
      <pos A="0.0245454" C="0.104825" G="0.846084" T="0.0245454"/>
      <pos A="0.108462" C="0.0209091" G="0.846084" T="0.0245454"/>
    </motif>
    <motif db="0" id="M6332_1.02" alt="(Maf)_(Homo_sapiens)_(DBD_1.00)" length="8" nsites="1"
        url="http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=T025970_1.02">
      <pos A="0.199827" C="0.150355" G="0.23354" T="0.416278"/>
      <pos A="0.0822654" C="0.104943" G="0.0794782" T="0.733314"/>
      <pos A="0.0457664" C="0.0599555" G="0.869734" T="0.0245454"/>
      <pos A="0.0703818" C="0.828141" G="0.0616527" T="0.0398245"/>
      <pos A="0.07208" C="0.0514664" G="0.0209091" T="0.855545"/>
      <pos A="0.0551027" C="0.0209091" G="0.882465" T="0.0415218"/>
      <pos A="0.815225" C="0.0247291" G="0.0773564" T="0.08269"/>
      <pos A="0.110276" C="0.582831" G="0.167755" T="0.139136"/>
    </motif>
    <motif db="0" id="M6432_1.02" alt="(Ppard)_(Homo_sapiens)_(DBD_0.97)" length="14" nsites="1"
        url="http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=T133219_1.02">
      <pos A="0.0781873" C="0.198775" G="0.0293791" T="0.693659"/>
      <pos A="0.131829" C="0.0773746" G="0.681553" T="0.109244"/>
      <pos A="0.702129" C="0.0773746" G="0.0604346" T="0.160062"/>
      <pos A="0.0753645" C="0.822716" G="0.0209091" T="0.0810109"/>
      <pos A="0.0584245" C="0.896121" G="0.0209091" T="0.0245454"/>
      <pos A="0.0753645" C="0.0773746" G="0.0209091" T="0.826353"/>
      <pos A="0.0753645" C="0.173365" G="0.218537" T="0.532733"/>
      <pos A="0.0753645" C="0.0209091" G="0.184658" T="0.719068"/>
      <pos A="0.216527" C="0.241124" G="0.359701" T="0.182648"/>
      <pos A="0.182648" C="0.241124" G="0.241124" T="0.335105"/>
      <pos A="0.126183" C="0.721078" G="0.0773746" T="0.0753645"/>
      <pos A="0.0245454" C="0.873535" G="0.0773746" T="0.0245454"/>
      <pos A="0.0810109" C="0.207245" G="0.0209091" T="0.690835"/>
      <pos A="0.450858" C="0.0971373" G="0.351231" T="0.100774"/>
    </motif>
    <motif db="0" id="M6478_1.02" alt="(Sox9)_(Homo_sapiens)_(DBD_1.00)" length="11" nsites="1"
        url="http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=T144581_1.02">
      <pos A="0.564169" C="0.128935" G="0.129454" T="0.177443"/>
      <pos A="0.306455" C="0.0591318" G="0.522303" T="0.112111"/>
      <pos A="0.788838" C="0.0709736" G="0.0517609" T="0.0884273"/>
      <pos A="0.903102" C="0.0209091" G="0.0255827" T="0.0504073"/>
      <pos A="0.0245454" C="0.922832" G="0.0209091" T="0.0317136"/>
      <pos A="0.907457" C="0.0209091" G="0.0399191" T="0.0317136"/>
      <pos A="0.90476" C="0.03327" G="0.0255827" T="0.0363873"/>
      <pos A="0.11501" C="0.0209091" G="0.0209091" T="0.843172"/>
      <pos A="0.307292" C="0.0327509" G="0.599886" T="0.0600709"/>
      <pos A="0.159579" C="0.116365" G="0.678323" T="0.0457336"/>
      <pos A="0.336244" C="0.159654" G="0.36418" T="0.139924"/>
    </motif>
  </targets>
  <matches>
    <query idx="0">
      <target idx="0" rc="y" off="-6" pv="8.82e-19" ev="6.33e-16" qv="1.27e-15"/>
      <target idx="3" rc="n" off="-11" pv="2.41e-03" ev="1.73e+00" qv="1.00e+00"/>
      <target idx="4" rc="y" off="-13" pv="4.99e-03" ev="3.58e+00" qv="1.00e+00"/>
      <target idx="1" rc="n" off="-19" pv="8.54e-03" ev="6.13e+00" qv="1.00e+00"/>
      <target idx="2" rc="n" off="-19" pv="9.77e-03" ev="7.01e+00" qv="1.00e+00"/>
    </query>
  </matches>
  <runtime cycles="31496000" seconds="31.496"/>
</tomtom>
