<?xml version='1.0' encoding='UTF-8' standalone='yes'?>
<tomtom version="5.0.1" release="Thu Jul 26 17:15:19 2018 -0700">
  <model>
    <command_line>tomtom -no-ssc -oc /srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019/task_262-naivegw/cisbp_tomtomout/m1_p20 -verbosity 1 -min-overlap 5 -mi 1 -dist pearson -evalue -thresh 10.0 /srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019/task_262-naivegw/cisbp_tomtomout/query_file /mnt/lab_data/kundaje/msharmin/annotations/Mus_musculus.meme</command_line>
    <distance_measure value="pearson"/>
    <threshold type="evalue">10</threshold>
    <alphabet name="DNA" like="dna">
      <letter id="A" symbol="A" complement="T" name="Adenine" colour="CC0000"/>
      <letter id="C" symbol="C" complement="G" name="Cytosine" colour="0000CC"/>
      <letter id="G" symbol="G" complement="C" name="Guanine" colour="FFB300"/>
      <letter id="T" symbol="T" aliases="U" complement="A" name="Thymine" colour="008000"/>
      <letter id="N" symbol="N" aliases="X." equals="ACGT" name="Any base"/>
      <letter id="V" symbol="V" equals="ACG" name="Not T"/>
      <letter id="H" symbol="H" equals="ACT" name="Not G"/>
      <letter id="D" symbol="D" equals="AGT" name="Not C"/>
      <letter id="B" symbol="B" equals="CGT" name="Not A"/>
      <letter id="M" symbol="M" equals="AC" name="Amino"/>
      <letter id="R" symbol="R" equals="AG" name="Purine"/>
      <letter id="W" symbol="W" equals="AT" name="Weak"/>
      <letter id="S" symbol="S" equals="CG" name="Strong"/>
      <letter id="Y" symbol="Y" equals="CT" name="Pyrimidine"/>
      <letter id="K" symbol="K" equals="GT" name="Keto"/>
    </alphabet>
    <strands>both</strands>
    <background from="--query--" A="0.27" C="0.23" G="0.23" T="0.27"/>
    <host>kali.stanford.edu</host>
    <when>Tue Jul  9 17:51:17 2019</when>
  </model>
  <query_dbs>
    <db source="/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019/task_262-naivegw/cisbp_tomtomout/query_file" name="query_file" loaded="1" excluded="0" last_mod_date="Tue Jul  9 17:51:17 2019"/>
  </query_dbs>
  <target_dbs>
    <db source="/mnt/lab_data/kundaje/msharmin/annotations/Mus_musculus.meme" name="Mus_musculus" loaded="718" excluded="0" last_mod_date="Wed Sep 14 11:58:32 2016"/>
  </target_dbs>
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  </queries>
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    <motif db="0" id="M4971_1.02" alt="(Ferd3l)_(Drosophila_melanogaster)_(DBD_0.89)" length="10" nsites="1"
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  <matches>
    <query idx="0">
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  </matches>
  <runtime cycles="1296000" seconds="1.296"/>
</tomtom>
