<?xml version='1.0' encoding='UTF-8' standalone='yes'?>
<tomtom version="5.0.1" release="Thu Jul 26 17:15:19 2018 -0700">
  <model>
    <command_line>tomtom -no-ssc -oc /srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019/task_243-naivegw/cisbp_tomtomout/m1_p12 -verbosity 1 -min-overlap 5 -mi 1 -dist pearson -evalue -thresh 10.0 /srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019/task_243-naivegw/cisbp_tomtomout/query_file /mnt/lab_data/kundaje/msharmin/annotations/Mus_musculus.meme</command_line>
    <distance_measure value="pearson"/>
    <threshold type="evalue">10</threshold>
    <alphabet name="DNA" like="dna">
      <letter id="A" symbol="A" complement="T" name="Adenine" colour="CC0000"/>
      <letter id="C" symbol="C" complement="G" name="Cytosine" colour="0000CC"/>
      <letter id="G" symbol="G" complement="C" name="Guanine" colour="FFB300"/>
      <letter id="T" symbol="T" aliases="U" complement="A" name="Thymine" colour="008000"/>
      <letter id="N" symbol="N" aliases="X." equals="ACGT" name="Any base"/>
      <letter id="V" symbol="V" equals="ACG" name="Not T"/>
      <letter id="H" symbol="H" equals="ACT" name="Not G"/>
      <letter id="D" symbol="D" equals="AGT" name="Not C"/>
      <letter id="B" symbol="B" equals="CGT" name="Not A"/>
      <letter id="M" symbol="M" equals="AC" name="Amino"/>
      <letter id="R" symbol="R" equals="AG" name="Purine"/>
      <letter id="W" symbol="W" equals="AT" name="Weak"/>
      <letter id="S" symbol="S" equals="CG" name="Strong"/>
      <letter id="Y" symbol="Y" equals="CT" name="Pyrimidine"/>
      <letter id="K" symbol="K" equals="GT" name="Keto"/>
    </alphabet>
    <strands>both</strands>
    <background from="--query--" A="0.27" C="0.23" G="0.23" T="0.27"/>
    <host>kali.stanford.edu</host>
    <when>Tue Jul  9 11:19:17 2019</when>
  </model>
  <query_dbs>
    <db source="/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019/task_243-naivegw/cisbp_tomtomout/query_file" name="query_file" loaded="1" excluded="0" last_mod_date="Tue Jul  9 11:19:17 2019"/>
  </query_dbs>
  <target_dbs>
    <db source="/mnt/lab_data/kundaje/msharmin/annotations/Mus_musculus.meme" name="Mus_musculus" loaded="718" excluded="0" last_mod_date="Wed Sep 14 11:58:32 2016"/>
  </target_dbs>
  <queries>
    <motif db="0" id="1" alt="TEMP" length="7" nsites="1">
      <pos A="0.430609" C="0.263336" G="0.172427" T="0.133636"/>
      <pos A="0.794245" C="0.0572727" G="0.0572727" T="0.0912091"/>
      <pos A="0.0427273" C="0.0633364" G="0.0815182" T="0.812427"/>
      <pos A="0.927573" C="0.0209091" G="0.0209091" T="0.0306091"/>
      <pos A="0.0245454" C="0.0209091" G="0.0209091" T="0.933636"/>
      <pos A="0.121518" C="0.0936364" G="0.154245" T="0.630609"/>
      <pos A="0.0972727" C="0.0693909" G="0.766364" T="0.0669727"/>
    </motif>
  </queries>
  <targets>
    <motif db="0" id="M0107_1.02" alt="Arid5b" length="8" nsites="1"
        url="http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=T007535_1.02">
      <pos A="0.216575" C="0.296151" G="0.192936" T="0.294337"/>
      <pos A="0.231483" C="0.245082" G="0.311645" T="0.21179"/>
      <pos A="0.402062" C="0.0986682" G="0.303391" T="0.195879"/>
      <pos A="0.254568" C="0.137443" G="0.09159" T="0.516398"/>
      <pos A="0.808315" C="0.036" G="0.0774018" T="0.0782827"/>
      <pos A="0.111289" C="0.0224055" G="0.0820364" T="0.784269"/>
      <pos A="0.210245" C="0.230285" G="0.0827227" T="0.476747"/>
      <pos A="0.278695" C="0.201805" G="0.298993" T="0.220507"/>
    </motif>
    <motif db="0" id="M0108_1.02" alt="Arid5a" length="11" nsites="1"
        url="http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=T007538_1.02">
      <pos A="0.230376" C="0.22674" G="0.312508" T="0.230376"/>
      <pos A="0.359441" C="0.18176" G="0.273403" T="0.185396"/>
      <pos A="0.25822" C="0.156928" G="0.0673573" T="0.517495"/>
      <pos A="0.844938" C="0.02105" G="0.109326" T="0.0246864"/>
      <pos A="0.933214" C="0.02105" G="0.02105" T="0.0246864"/>
      <pos A="0.0246864" C="0.02105" G="0.02105" T="0.933214"/>
      <pos A="0.933214" C="0.02105" G="0.02105" T="0.0246864"/>
      <pos A="0.0246864" C="0.02105" G="0.02105" T="0.933214"/>
      <pos A="0.0461282" C="0.0424918" G="0.0424918" T="0.868887"/>
      <pos A="0.186107" C="0.0874718" G="0.444788" T="0.281632"/>
      <pos A="0.299051" C="0.201875" G="0.201875" T="0.2972"/>
    </motif>
    <motif db="0" id="M0213_1.02" alt="Olig3" length="11" nsites="1"
        url="http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=T015218_1.02">
      <pos A="0.207985" C="0.289982" G="0.294047" T="0.207985"/>
      <pos A="0.274477" C="0.0935664" G="0.0935664" T="0.538389"/>
      <pos A="0.689895" C="0.130641" G="0.0430646" T="0.136399"/>
      <pos A="0.197111" C="0.491718" G="0.0211836" T="0.289986"/>
      <pos A="0.201975" C="0.579699" G="0.0211836" T="0.197142"/>
      <pos A="0.76064" C="0.0211836" G="0.0211836" T="0.196992"/>
      <pos A="0.02482" C="0.197708" G="0.105898" T="0.671574"/>
      <pos A="0.848097" C="0.0211836" G="0.0211836" T="0.109535"/>
      <pos A="0.246065" C="0.152474" G="0.236419" T="0.365042"/>
      <pos A="0.179435" C="0.175799" G="0.377873" T="0.266893"/>
      <pos A="0.229937" C="0.226301" G="0.313824" T="0.229937"/>
    </motif>
    <motif db="0" id="M0217_1.02" alt="Neurog1" length="10" nsites="1"
        url="http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=T015228_1.02">
      <pos A="0.410726" C="0.124072" G="0.23498" T="0.230222"/>
      <pos A="0.178761" C="0.559174" G="0.176675" T="0.0853918"/>
      <pos A="0.271241" C="0.646161" G="0.0453964" T="0.0372018"/>
      <pos A="0.629194" C="0.0525564" G="0.190714" T="0.127537"/>
      <pos A="0.0257891" C="0.0793646" G="0.151005" T="0.743841"/>
      <pos A="0.746267" C="0.148859" G="0.0719" T="0.0329745"/>
      <pos A="0.0933764" C="0.158138" G="0.0305082" T="0.717977"/>
      <pos A="0.0351664" C="0.02173" G="0.811555" T="0.131548"/>
      <pos A="0.0596673" C="0.15775" G="0.404208" T="0.378375"/>
      <pos A="0.107966" C="0.266557" G="0.234465" T="0.39101"/>
    </motif>
  </targets>
  <matches>
    <query idx="0">
      <target idx="1" rc="n" off="3" pv="8.07e-05" ev="5.79e-02" qv="1.16e-01"/>
      <target idx="0" rc="n" off="1" pv="6.59e-03" ev="4.73e+00" qv="1.00e+00"/>
      <target idx="3" rc="y" off="2" pv="8.51e-03" ev="6.11e+00" qv="1.00e+00"/>
      <target idx="2" rc="n" off="4" pv="1.04e-02" ev="7.46e+00" qv="1.00e+00"/>
    </query>
  </matches>
  <runtime cycles="396000" seconds="0.396"/>
</tomtom>
