# Parameters
sample_name = "MEL;D;En"
task_dir = "task_273-naivegw_gti"

try:
    reload  # Python 2.7
except NameError:
    try:
        from importlib import reload  # Python 3.4+
    except ImportError:
        from imp import reload  # Python 3.0 - 3.3

modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/modisco2019"
mitra_subdir = "report/tomtom_reports"
#task_idx = 0
#sample_name = "MPP;A;CL"
#task_dir = "task_{0}-naivegw{1}".format(task_idx, hyperparameter_group)

from matlas.modisco_report import report_pipeline
#modisco_report.run_pipeline(sample_name, prepare=False, render=False)

Using TensorFlow backend.
2019-03-25 11:55:09,507 [WARNING] git-lfs not installed

load data from labcluster

report_pipeline(sample_name, modisco_root, mitra_subdir, task_dir, importance=True, render=True)

rsync -t -av /srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/modisco2019/task_273-naivegw_gti/tomtomout /srv/www/kundaje/msharmin/report/tomtom_reports/task_273-naivegw_gti/
chmod -R +755 /srv/www/kundaje/msharmin/report/tomtom_reports/task_273-naivegw_gti

TF-MoDISco is using the TensorFlow backend.

Displaying motifs which has positive importances for the cell type

metacluster_0, # patterns: 18, # seqlets: 13879, Positive for: MEL;D;En

• pattern_0: # seqlets: 3588

  Cisbp matches (q-value>=0.01) using Tomtom (Full Report) :

  Sfpi1, Spib, Ets1, Spic, Bcl11a

  Sequence

  

  Contrib Scores

  

  Hyp_Contrib Scores

  
• pattern_1: # seqlets: 2861

  Cisbp matches (q-value>=0.01) using Tomtom (Full Report) :

  Ctcf, Ctcfl

  Sequence

  

  Contrib Scores

  

  Hyp_Contrib Scores

  
• pattern_2: # seqlets: 1857

  Cisbp matches (q-value>=0.01) using Tomtom (Full Report) :

  Gata2, Gata4, Gata1, Gata6, Gata3

  Sequence

  

  Contrib Scores

  

  Hyp_Contrib Scores

  
• pattern_3: # seqlets: 1221

  Cisbp matches (q-value>=0.01) using Tomtom (Full Report) :

  Nfe2l2, Nfe2, Bach1, Smarcc1, Fos, Fosb

  Sequence

  

  Contrib Scores

  

  Hyp_Contrib Scores

  
• pattern_4: # seqlets: 844

  Cisbp matches (q-value>=0.01) using Tomtom (Full Report) :

  Klf5, Klf4, Klf7, Klf8, Klf12, Sp5, Klf2, Sp3, Klf16, Sp2, Klf14, Sp8, Klf1, Klf3, Klf13, Egr2, Wt1, Egr4

  Sequence

  

  Contrib Scores

  

  Hyp_Contrib Scores

  
• pattern_5: # seqlets: 707

  Cisbp matches (q-value>=0.01) using Tomtom (Full Report) :

  Nfia, Nfix, Nfib, Nfic

  Sequence

  

  Contrib Scores

  

  Hyp_Contrib Scores

  
• pattern_6: # seqlets: 535

  Cisbp matches (q-value>=0.01) using Tomtom (Full Report) :

  Runx2, Runx1

  Sequence

  

  Contrib Scores

  

  Hyp_Contrib Scores

  
• pattern_7: # seqlets: 443

  Cisbp matches (q-value>=0.01) using Tomtom (Full Report) :

  Sfpi1

  Sequence

  

  Contrib Scores

  

  Hyp_Contrib Scores

  
• pattern_8: # seqlets: 409

  Cisbp matches (q-value>=0.01) using Tomtom (Full Report) :

  Cebpb, Cebpa, Cebpg, Cebpd

  Sequence

  

  Contrib Scores

  

  Hyp_Contrib Scores

  
• pattern_9: # seqlets: 369

  Cisbp matches (q-value>=0.01) using Tomtom (Full Report) :

  Sequence

  

  Contrib Scores

  

  Hyp_Contrib Scores

  
• pattern_10: # seqlets: 278

  Cisbp matches (q-value>=0.01) using Tomtom (Full Report) :

  Smarcc2, Tbx2, Zfp143, Six5, Zfp523

  Sequence

  

  Contrib Scores

  

  Hyp_Contrib Scores

  
• pattern_11: # seqlets: 234

  Cisbp matches (q-value>=0.01) using Tomtom (Full Report) :

  Sp3, Gabpa, Nr2c2, Ets2, Ets1, Elk3, Erf, Sp2, Elf1, E2f1, Zbtb7a, Erg, Zfx, Etv1, Etv5, Etv4, Tcfap2d, Elk1, Elk4, Ehf, Gm5454, Ctcfl, Wt1

  Sequence

  

  Contrib Scores

  

  Hyp_Contrib Scores

  
• pattern_12: # seqlets: 182

  Cisbp matches (q-value>=0.01) using Tomtom (Full Report) :

  Pbx3

  Sequence

  

  Contrib Scores

  

  Hyp_Contrib Scores

  
• pattern_13: # seqlets: 100

  Cisbp matches (q-value>=0.01) using Tomtom (Full Report) :

  Mbtps2, Yy1, Sp3

  Sequence

  

  Contrib Scores

  

  Hyp_Contrib Scores

  
• pattern_14: # seqlets: 76

  Cisbp matches (q-value>=0.01) using Tomtom (Full Report) :

  Sp3

  Sequence

  

  Contrib Scores

  

  Hyp_Contrib Scores

  
• pattern_15: # seqlets: 70

  Cisbp matches (q-value>=0.01) using Tomtom (Full Report) :

  Sequence

  

  Contrib Scores

  

  Hyp_Contrib Scores

  
• pattern_16: # seqlets: 56

  Cisbp matches (q-value>=0.01) using Tomtom (Full Report) :

  Sp3, Mbtps2, Zbtb7a, Yy1, Wt1

  Sequence

  

  Contrib Scores

  

  Hyp_Contrib Scores

  
• pattern_17: # seqlets: 49

  Cisbp matches (q-value>=0.01) using Tomtom (Full Report) :

  Sp3, Mbtps2

  Sequence

  

  Contrib Scores

  

  Hyp_Contrib Scores

  

report_pipeline(sample_name, modisco_root, mitra_subdir, task_dir, importance=False, render=True)

rsync -t -av /srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/modisco2019/task_273-naivegw_gti/tomtomout /srv/www/kundaje/msharmin/report/tomtom_reports/task_273-naivegw_gti/
chmod -R +755 /srv/www/kundaje/msharmin/report/tomtom_reports/task_273-naivegw_gti
Displaying motifs which has negative importances for the cell type

metacluster_1, # patterns: 22, # seqlets: 2714, Negative for: MEL;D;En

• pattern_0: # seqlets: 1046

  Cisbp matches (q-value>=0.01) using Tomtom (Full Report) :

  Sequence

  

  Contrib Scores

  

  Hyp_Contrib Scores

  
• pattern_1: # seqlets: 224

  Cisbp matches (q-value>=0.01) using Tomtom (Full Report) :

  Sequence

  

  Contrib Scores

  

  Hyp_Contrib Scores

  
• pattern_2: # seqlets: 187

  Cisbp matches (q-value>=0.01) using Tomtom (Full Report) :

  Ctcf, Ctcfl

  Sequence

  

  Contrib Scores

  

  Hyp_Contrib Scores

  
• pattern_3: # seqlets: 131

  Cisbp matches (q-value>=0.01) using Tomtom (Full Report) :

  Sp2, Sp5, Klf16, Sp8, Sp3, Klf7, Klf5, Klf12, Sp1, Klf8, Klf4, Klf14, Klf2, Maz, Zbtb7a, Sp4, Wt1, Egr4, Zfp281, Zfp148, Rreb1, Klf1, Egr2, Klf6

  Sequence

  

  Contrib Scores

  

  Hyp_Contrib Scores

  
• pattern_4: # seqlets: 111

  Cisbp matches (q-value>=0.01) using Tomtom (Full Report) :

  Sequence

  

  Contrib Scores

  

  Hyp_Contrib Scores

  
• pattern_5: # seqlets: 91

  Cisbp matches (q-value>=0.01) using Tomtom (Full Report) :

  Sequence

  

  Contrib Scores

  

  Hyp_Contrib Scores

  
• pattern_6: # seqlets: 85

  Cisbp matches (q-value>=0.01) using Tomtom (Full Report) :

  Sequence

  

  Contrib Scores

  

  Hyp_Contrib Scores

  
• pattern_7: # seqlets: 84

  Cisbp matches (q-value>=0.01) using Tomtom (Full Report) :

  Stat5b

  Sequence

  

  Contrib Scores

  

  Hyp_Contrib Scores

  
• pattern_8: # seqlets: 76

  Cisbp matches (q-value>=0.01) using Tomtom (Full Report) :

  Sequence

  

  Contrib Scores

  

  Hyp_Contrib Scores

  
• pattern_9: # seqlets: 73

  Cisbp matches (q-value>=0.01) using Tomtom (Full Report) :

  Sequence

  

  Contrib Scores

  

  Hyp_Contrib Scores

  
• pattern_10: # seqlets: 73

  Cisbp matches (q-value>=0.01) using Tomtom (Full Report) :

  Sequence

  

  Contrib Scores

  

  Hyp_Contrib Scores

  
• pattern_11: # seqlets: 67

  Cisbp matches (q-value>=0.01) using Tomtom (Full Report) :

  Sequence

  

  Contrib Scores

  

  Hyp_Contrib Scores

  
• pattern_12: # seqlets: 65

  Cisbp matches (q-value>=0.01) using Tomtom (Full Report) :

  Sequence

  

  Contrib Scores

  

  Hyp_Contrib Scores

  
• pattern_13: # seqlets: 62

  Cisbp matches (q-value>=0.01) using Tomtom (Full Report) :

  Sebox, Tlx2, Lhx3, Alx1, Uncx, Dbx1, Alx4, Lhx5

  Sequence

  

  Contrib Scores

  

  Hyp_Contrib Scores

  
• pattern_14: # seqlets: 51

  Cisbp matches (q-value>=0.01) using Tomtom (Full Report) :

  Gabpa, Erg, Erf, Ets1, Elf2, Etv6, Elf4, Etv3, Gm4881, Etv5, Fli1, Elk1, Fev, Sfpi1, Elf3, Elk4

  Sequence

  

  Contrib Scores

  

  Hyp_Contrib Scores

  
• pattern_15: # seqlets: 45

  Cisbp matches (q-value>=0.01) using Tomtom (Full Report) :

  Ctcf, Ctcfl

  Sequence

  

  Contrib Scores

  

  Hyp_Contrib Scores

  
• pattern_16: # seqlets: 45

  Cisbp matches (q-value>=0.01) using Tomtom (Full Report) :

  E2f3, Sp2

  Sequence

  

  Contrib Scores

  

  Hyp_Contrib Scores

  
• pattern_17: # seqlets: 44

  Cisbp matches (q-value>=0.01) using Tomtom (Full Report) :

  Sequence

  

  Contrib Scores

  

  Hyp_Contrib Scores

  
• pattern_18: # seqlets: 46

  Cisbp matches (q-value>=0.01) using Tomtom (Full Report) :

  Sequence

  

  Contrib Scores

  

  Hyp_Contrib Scores

  
• pattern_19: # seqlets: 40

  Cisbp matches (q-value>=0.01) using Tomtom (Full Report) :

  Ctcf, Ctcfl

  Sequence

  

  Contrib Scores

  

  Hyp_Contrib Scores

  
• pattern_20: # seqlets: 34

  Cisbp matches (q-value>=0.01) using Tomtom (Full Report) :

  Sequence

  

  Contrib Scores

  

  Hyp_Contrib Scores

  
• pattern_21: # seqlets: 34

  Cisbp matches (q-value>=0.01) using Tomtom (Full Report) :

  Gabpa, Erf, Etv5, Elk1, Etv6, Gm4881, Etv3, Elf2, Fli1, Elk4, Elf4, Etv2, Spib, Elk3

  Sequence

  

  Contrib Scores

  

  Hyp_Contrib Scores