# Parameters
hyperparameter_group = "_70k_832"
sample_name = "MPP_A_CL"

try:
    reload  # Python 2.7
except NameError:
    try:
        from importlib import reload  # Python 3.4+
    except ImportError:
        from imp import reload  # Python 3.0 - 3.3

modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/modisco2019"
mitra_subdir = "report/test"
task_idx = 0
sample_name = "MPP;A;CL"
task_dir = "task_{0}-naivegw{1}".format(task_idx, hyperparameter_group)

from matlas.modisco_report import report_pipeline
#modisco_report.run_pipeline(sample_name, prepare=False, render=False)

Using TensorFlow backend.
2019-02-26 19:43:49,968 [WARNING] git-lfs not installed

report_pipeline(sample_name, modisco_root, mitra_subdir, task_dir, importance=True)

rsync -t -av /srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/modisco2019/task_0-naivegw_70k_832/tomtomout /srv/www/kundaje/msharmin/report/test/task_0-naivegw_70k_832/
chmod -R +755 /srv/www/kundaje/msharmin/report/test/task_0-naivegw_70k_832

TF-MoDISco is using the TensorFlow backend.

Displaying motifs which has positive importances for the cell type

metacluster_1, # patterns: 20, # seqlets: 41732, Positive for: MPP;A;CL

• pattern_0: # seqlets: 11239

  Cisbp matches (q-value>=0.01) using Tomtom (Full Report) :

  Ctcf, Ctcfl

  Sequence

  

  Contrib Scores

  

  Hyp_Contrib Scores

  
• pattern_1: # seqlets: 10690

  Cisbp matches (q-value>=0.01) using Tomtom (Full Report) :

  Sfpi1, Spib, Ets1, Bcl11a, Spic, Etv6

  Sequence

  

  Contrib Scores

  

  Hyp_Contrib Scores

  
• pattern_2: # seqlets: 3387

  Cisbp matches (q-value>=0.01) using Tomtom (Full Report) :

  Sp2, Sp3, Klf16, Sp5, Klf5, Sp8, Klf14, Sp1, Zbtb7a, Klf7, Wt1, Klf2, Egr4, Zfp148, Sp4, Klf4, Klf8, Klf6, Klf12, Zfp281, Zfx, E2f1, Maz, Rreb1, Egr2

  Sequence

  

  Contrib Scores

  

  Hyp_Contrib Scores

  
• pattern_3: # seqlets: 2256

  Cisbp matches (q-value>=0.01) using Tomtom (Full Report) :

  Tcfec, Creb3, Creb1, Tcfeb, Bach2

  Sequence

  

  Contrib Scores

  

  Hyp_Contrib Scores

  
• pattern_4: # seqlets: 2128

  Cisbp matches (q-value>=0.01) using Tomtom (Full Report) :

  Sequence

  

  Contrib Scores

  

  Hyp_Contrib Scores

  
• pattern_5: # seqlets: 1937

  Cisbp matches (q-value>=0.01) using Tomtom (Full Report) :

  Gabpa, Ets1, Elk3, Etv1, Etv4, Erf, Gm5454, Elk1, Etv5, Elk4, Erg, Ets2, Fli1, Nr2c2, Ehf, Etv3, Etv6, Gm4881, E2f6

  Sequence

  

  Contrib Scores

  

  Hyp_Contrib Scores

  
• pattern_6: # seqlets: 1695

  Cisbp matches (q-value>=0.01) using Tomtom (Full Report) :

  Foxi1, Pbx3, Nfya

  Sequence

  

  Contrib Scores

  

  Hyp_Contrib Scores

  
• pattern_7: # seqlets: 1458

  Cisbp matches (q-value>=0.01) using Tomtom (Full Report) :

  Irf1, Prdm1, Bcl11a, Stat2, Irf2

  Sequence

  

  Contrib Scores

  

  Hyp_Contrib Scores

  
• pattern_8: # seqlets: 1285

  Cisbp matches (q-value>=0.01) using Tomtom (Full Report) :

  Sequence

  

  Contrib Scores

  

  Hyp_Contrib Scores

  
• pattern_9: # seqlets: 1144

  Cisbp matches (q-value>=0.01) using Tomtom (Full Report) :

  Nfe2l2, Nfe2, Bach1

  Sequence

  

  Contrib Scores

  

  Hyp_Contrib Scores

  
• pattern_10: # seqlets: 946

  Cisbp matches (q-value>=0.01) using Tomtom (Full Report) :

  Smarcc2, Tbx2, Zfp143, Zfp523, Six5

  Sequence

  

  Contrib Scores

  

  Hyp_Contrib Scores

  
• pattern_11: # seqlets: 795

  Cisbp matches (q-value>=0.01) using Tomtom (Full Report) :

  Rfx1, Rfx2, Arid2, Rfx4, Rfx7, Rfx3, Rfx5

  Sequence

  

  Contrib Scores

  

  Hyp_Contrib Scores

  
• pattern_12: # seqlets: 665

  Cisbp matches (q-value>=0.01) using Tomtom (Full Report) :

  Sequence

  

  Contrib Scores

  

  Hyp_Contrib Scores

  
• pattern_13: # seqlets: 536

  Cisbp matches (q-value>=0.01) using Tomtom (Full Report) :

  Mbtps2, Sp3, Yy1

  Sequence

  

  Contrib Scores

  

  Hyp_Contrib Scores

  
• pattern_14: # seqlets: 478

  Cisbp matches (q-value>=0.01) using Tomtom (Full Report) :

  Sequence

  

  Contrib Scores

  

  Hyp_Contrib Scores

  
• pattern_15: # seqlets: 425

  Cisbp matches (q-value>=0.01) using Tomtom (Full Report) :

  Cebpb, Cebpa, Cebpd, Cebpg

  Sequence

  

  Contrib Scores

  

  Hyp_Contrib Scores

  
• pattern_16: # seqlets: 407

  Cisbp matches (q-value>=0.01) using Tomtom (Full Report) :

  Nfia, Nfix, Nfib

  Sequence

  

  Contrib Scores

  

  Hyp_Contrib Scores

  
• pattern_17: # seqlets: 107

  Cisbp matches (q-value>=0.01) using Tomtom (Full Report) :

  Rest

  Sequence

  

  Contrib Scores

  

  Hyp_Contrib Scores

  
• pattern_18: # seqlets: 81

  Cisbp matches (q-value>=0.01) using Tomtom (Full Report) :

  Hsf1

  Sequence

  

  Contrib Scores

  

  Hyp_Contrib Scores

  
• pattern_19: # seqlets: 73

  Cisbp matches (q-value>=0.01) using Tomtom (Full Report) :

  Mef2d, Mef2b, Mef2c, Mef2a

  Sequence

  

  Contrib Scores

  

  Hyp_Contrib Scores

  

report_pipeline(sample_name, modisco_root, mitra_subdir, task_dir, importance=False)

rsync -t -av /srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/modisco2019/task_0-naivegw_70k_832/tomtomout /srv/www/kundaje/msharmin/report/test/task_0-naivegw_70k_832/
chmod -R +755 /srv/www/kundaje/msharmin/report/test/task_0-naivegw_70k_832
Displaying motifs which has negative importances for the cell type

metacluster_0, # patterns: 12, # seqlets: 10157, Negative for: MPP;A;CL

• pattern_0: # seqlets: 2381

  Cisbp matches (q-value>=0.01) using Tomtom (Full Report) :

  Zbtb7b, Zic5, Glis1

  Sequence

  

  Contrib Scores

  

  Hyp_Contrib Scores

  
• pattern_1: # seqlets: 1867

  Cisbp matches (q-value>=0.01) using Tomtom (Full Report) :

  Sequence

  

  Contrib Scores

  

  Hyp_Contrib Scores

  
• pattern_2: # seqlets: 1409

  Cisbp matches (q-value>=0.01) using Tomtom (Full Report) :

  Sequence

  

  Contrib Scores

  

  Hyp_Contrib Scores

  
• pattern_3: # seqlets: 1263

  Cisbp matches (q-value>=0.01) using Tomtom (Full Report) :

  Sequence

  

  Contrib Scores

  

  Hyp_Contrib Scores

  
• pattern_4: # seqlets: 1025

  Cisbp matches (q-value>=0.01) using Tomtom (Full Report) :

  Erg, Ets1, ENSMUSG00000044690, Elf5, Fev, Elf3, Ehf

  Sequence

  

  Contrib Scores

  

  Hyp_Contrib Scores

  
• pattern_5: # seqlets: 800

  Cisbp matches (q-value>=0.01) using Tomtom (Full Report) :

  Sequence

  

  Contrib Scores

  

  Hyp_Contrib Scores

  
• pattern_6: # seqlets: 657

  Cisbp matches (q-value>=0.01) using Tomtom (Full Report) :

  Runx1, Runx2

  Sequence

  

  Contrib Scores

  

  Hyp_Contrib Scores

  
• pattern_7: # seqlets: 247

  Cisbp matches (q-value>=0.01) using Tomtom (Full Report) :

  Nr5a2

  Sequence

  

  Contrib Scores

  

  Hyp_Contrib Scores

  
• pattern_8: # seqlets: 189

  Cisbp matches (q-value>=0.01) using Tomtom (Full Report) :

  Sequence

  

  Contrib Scores

  

  Hyp_Contrib Scores

  
• pattern_9: # seqlets: 141

  Cisbp matches (q-value>=0.01) using Tomtom (Full Report) :

  Sequence

  

  Contrib Scores

  

  Hyp_Contrib Scores

  
• pattern_10: # seqlets: 90

  Cisbp matches (q-value>=0.01) using Tomtom (Full Report) :

  Sequence

  

  Contrib Scores

  

  Hyp_Contrib Scores

  
• pattern_11: # seqlets: 88

  Cisbp matches (q-value>=0.01) using Tomtom (Full Report) :

  Sequence

  

  Contrib Scores

  

  Hyp_Contrib Scores