In [1]:
# Parameters
data_name = "Zfp652"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
In [2]:
from matlas.modisco_report import call_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-05 12:30:19,585 [WARNING] git-lfs not installed
In [3]:
homer_matches, modisco_matches = call_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=overwrite)
In [4]:
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Zfp652: Motif: M02938_2.00



Forward PWM

Reverse PWM

No Cell types that both TF-MoDISco and Homer finds Zfp652
No Cell types only TF-MoDISco finds Zfp652
Unique Cell types only Homer finds Zfp652

Cell typeModiscoHomer
MEL cell line treated with 125 uM zinc dichloride for 24 hoursabsent

Pattern: m12

Significance: 0.0612581