# Parameters
data_name = "Tcfec"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"

from matlas.modisco_report import call_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-07-26 02:34:50,354 [WARNING] git-lfs not installed

homer_matches, modisco_matches = call_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root)

display_comparative_cell_types(data_name, homer_matches, modisco_matches)

TF-MoDISco is using the TensorFlow backend.

CISBP ID of Tcfec: M0201_1.02

Shared Cell types both TF-MoDISco and Homer finds Tcfec

Cell type	Modisco	Homer
bone marrow-derived macrophages (Unstimulated)	Significance: 1.41962e-05	Significance: 5.93822e-05
Primary bone marrow derived dendritic cells (DCs, control vector)	Significance: 1.0266700000000001e-05	Significance: 0.00633782
ch12 wt with drug	Significance: 2.3731700000000002e-05	Significance: 0.014727200000000003
Undifferentiated mouse embryonic stem cells (ZhBTc4)	Significance: 6.14599e-06	Significance: 0.000714563

Unique Cell types only TF-MoDISco finds Tcfec

Cell type	Modisco	Homer
MPP	Significance: 0.00257659	absent
NK cells (spleen)	Significance: 3.54712e-05	absent
Large Intestine (adult-8wks)	Significance: 5.43244e-05	absent
mature B cells	Significance: 9.81238e-05	absent
Act B cell	Significance: 5.5858e-05	absent
skeletal muscle tissue(adult-8wks)	Significance: 1.59663e-05	absent
Splenic B cell	Significance: 9.99581e-05	absent
Bone marrow derived pre-B cell	Significance: 7.07674e-05	absent
B220+CD43+ B cells	Significance: 0.000113328	absent
aB LPS+IL4	Significance: 6.44973e-05	absent
aB LPS+IL21	Significance: 0.000126563	absent
aB LPS+a-d-dextran	Significance: 0.00011159	absent
mast cells	Significance: 2.7006100000000002e-05	absent
dendritic cell(100 ng/mL Lipopolysaccharide, 6hours)	Significance: 6.66079e-05	absent
eosinphils (ex-vivo, BalbC)	Significance: 6.88521e-05	absent
dendritic cell(100 ng/mL Lipopolysaccharide, 2hours)	Significance: 2.88369e-05	absent
neutrophils	Significance: 2.34244e-05	absent
NIH3T3	Significance: 3.80627e-05	absent
embryo_posterior part(E8.5, deltaA)	Significance: 8.468729999999999e-05	absent
embryo_posterior part (E8.5, deltaC)	Significance: 0.000162332	absent
CD4-CD8+ TCRhi CD69lo CD24lo (MHCII def mice)	Significance: 7.65188e-05	absent
BMDCs(dendritic cell)	Significance: 6.26216e-05	absent
macrophage	Significance: 0.00042762	absent
DN3a	Significance: 7.060270000000001e-05	absent
vasoactive intestinal peptide-positive (VIP) inhibitory neurons	Significance: 5.73504e-05	absent
ES cells (E14)	Significance: 0.000102347	absent
Adipose	Significance: 0.00010930899999999999	absent
dendritic in vitro differentiated cells	Significance: 1.62909e-05	absent
Brain- Medulla Oblongata	Significance: 5.22146e-05	absent
Undifferentiated mouse embryonic stem cells (ZhBTc4)	Significance: 2.09739e-05	absent
restingB	Significance: 6.18209e-05	absent
Embryonic day 0 (stem cell, ES-CJ7)	Significance: 7.54241e-05	absent
Long Term HSC	Significance: 0.00011541700000000001	absent
fibroblast/NIH-3T3	Significance: 3.91508e-05	absent
Liver (Adult 8 weeks)	Significance: 3.48721e-05	absent
gamma delta TCR Marco	Significance: 6.11546e-05	absent
gamma delta TCR M/S -/-	Significance: 0.00015047	absent
Lung (adult-8wks)	Significance: 6.86638e-05	absent
Blast-cultured splenic CD4+ T-cells	Significance: 5.96135e-05	absent
Whole Brain (E14.5)	Significance: 0.00572893	absent
ILC2	Significance: 8.876790000000001e-05	absent
Mus musculus strain 129S1/SVImJ ES-CJ7 stem cell male embryo	Significance: 1.96149e-05	absent
ch12 wt	Significance: 5.50358e-05	absent
ch12 med14 mt	Significance: 0.000119307	absent
Fibroblast/NIH3T3	Significance: 9.380280000000001e-05	absent
mouse embryo fibroblasts/3T3-L1	Significance: 0.000113076	absent
kidney (P0)	Significance: 8.3069e-05	absent
Liver(E14.5)	Significance: 0.000163511	absent
liver(P0)	Significance: 6.2989e-05	absent
lung(P0)	Significance: 5.48753e-05	absent
cerebellar granule cell precursors(wt)	Significance: 8.54024e-05	absent
CD4-positive, CD25-positive, alpha-beta regulatory T cell(adult-8wks)	Significance: 0.000115479	absent
Mesoderm(E11.5)	Significance: 3.1461500000000004e-05	absent
Muller cell(P12)	Significance: 7.68075e-05	absent
mixed mouse hindbrain(P0)	Significance: 3.19426e-05	absent
midbrain(P0)	Significance: 4.66457e-05	absent

Unique Cell types only Homer finds Tcfec

Cell type	Modisco	Homer
CD4+CD8-TCRhi CD69hi CD24hi CD25-(B2m def mice)	absent	Significance: 0.00221045
ILC3(WT)	absent	Significance: 0.000473045
bone marrow-derived macrophages(Lipid A stimulation 120min)	absent	Significance: 0.00248849
NCR+ILC3+IL23	absent	Significance: 0.00078248
ZHBTC4 ES doxycycline-treated	absent	Significance: 0.00342794