# Parameters
data_name = "Smarcc1"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"

from matlas.modisco_report import call_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-07-26 02:01:24,353 [WARNING] git-lfs not installed

homer_matches, modisco_matches = call_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root)

display_comparative_cell_types(data_name, homer_matches, modisco_matches)

TF-MoDISco is using the TensorFlow backend.

CISBP ID of Smarcc1: M4526_1.02

Shared Cell types both TF-MoDISco and Homer finds Smarcc1

Cell type	Modisco	Homer
ILC1_AbxGermFree	Significance: 9.3734e-05	Significance: 0.0231778
Lung (adult-8wks)	Significance: 0.000767844	Significance: 3.3498400000000004e-05
Embryonic Stem Cells(v6.5)	Significance: 8.697310000000001e-06	Significance: 1.85646e-07

Unique Cell types only TF-MoDISco finds Smarcc1

Cell type	Modisco	Homer
mouse embryonic stem cells (F1216)	Significance: 1.94433e-05	absent
dendritic in vitro differentiated cells	Significance: 0.000691036	absent
memory TCR SV40-I CD8 T cells isolated D35 from established tumors (with listeria immunization)	Significance: 0.000683455	absent
embryo_posterior part (E8.5, deltaC)	Significance: 0.00011167299999999999	absent
Retina(newborn 1 day)	Significance: 0.00562757	absent
neural progenitor cells(G4)	Significance: 1.16971e-06	absent
macrophage	Significance: 0.014792700000000002	absent
Mouse hematopoietic suspension cell line positive for CD34(416B cell line)	Significance: 0.0701284	absent
CH12.LX cell line	Significance: 0.00255564	absent
ILC2 precursor	Significance: 1.6841800000000002e-05	absent
aB aCD40+IL4	Significance: 6.11865e-05	absent
NCR+ILC3+IL23	Significance: 0.0349089	absent
ES_derived Definitive Endoderm	Significance: 6.56808e-06	absent
JM8.N4 Asynchronous	Significance: 6.72069e-05	absent
embryo_3rd rhombomere (E8.5, wt)	Significance: 0.0887525	absent
Megakaryocyte primary cell	Significance: 0.0389715	absent

Unique Cell types only Homer finds Smarcc1

Cell type	Modisco	Homer
CD25CCR6 DN CD4 (memory CD4+ T cell)	absent	Significance: 0.00116623
Th17 CD4	absent	Significance: 0.00860527
memory TCR SV40-I CD8 T cells isolated D14 from established tumors (with listeria immunization)	absent	Significance: 0.00505794
memory TCR SV40-I CD8 T cells isolated D14 from established tumors (without listeria immunization)	absent	Significance: 0.00568434
stomach(P0)	absent	Significance: 0.00330852
eosinphils (ex-vivo, BalbC)	absent	Significance: 0.00804493
Small Intestine	absent	Significance: 0.00601503
Thymus MECs (Aire+/+)	absent	Significance: 0.00331637
FACS-purified corticotrope cells	absent	Significance: 0.000751167
Heart	absent	Significance: 0.00038453699999999995
NCR+ILC3	absent	Significance: 3.70528e-06
ILC2	absent	Significance: 0.026390300000000002
Th2 (Nippo infected)	absent	Significance: 2.3561e-06
Lung(adult-8wks)	absent	Significance: 0.000137249
lung(P0)	absent	Significance: 9.86137e-06
Mus musculus C57BL/6 adipocyte was differentiated from 3T3-L1 (Day 8)	absent	Significance: 0.00083469
ILC2+IL33+IL25	absent	Significance: 0.000225037
ILC2(WT)	absent	Significance: 1.1296600000000001e-05
ILC3(WT)	absent	Significance: 0.00707926
ILC3_AbxGermFree	absent	Significance: 2.47798e-05
CD8 Tcells(day35 post infection LCMV)	absent	Significance: 0.00315129
Spleen CD8+ T cell(SLEC)	absent	Significance: 1.98953e-05
TCR SV40-I CD8 T cells isolated D14 from early malignant lesions	absent	Significance: 0.00575439