In [1]:
# Parameters
data_name = "Prrxl1"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
In [2]:
from matlas.modisco_report import call_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-07-26 01:42:36,450 [WARNING] git-lfs not installed
In [3]:
homer_matches, modisco_matches = call_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root)
In [4]:
display_comparative_cell_types(data_name, homer_matches, modisco_matches)

TF-MoDISco is using the TensorFlow backend.

CISBP ID of Prrxl1: M5348_1.02
Shared Cell types both TF-MoDISco and Homer finds Prrxl1
Cell typeModiscoHomer
cholinergic motor neuron cell line MN1 treated with 10 nM methyltrienolone

Significance: 6.3869e-07

Significance: 0.0009159680000000001

MN1 cell line

Significance: 1.2877799999999998e-06

Significance: 0.00055101

No Cell types only TF-MoDISco finds Prrxl1
No Cell types only Homer finds Prrxl1