In [1]:
# Parameters
data_name = "Pou4f1"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
In [2]:
from matlas.modisco_report import call_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-07-26 01:37:44,314 [WARNING] git-lfs not installed
In [3]:
homer_matches, modisco_matches = call_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root)
In [4]:
display_comparative_cell_types(data_name, homer_matches, modisco_matches)

TF-MoDISco is using the TensorFlow backend.

CISBP ID of Pou4f1: M5740_1.02
Shared Cell types both TF-MoDISco and Homer finds Pou4f1
Cell typeModiscoHomer
mixed embryonic mouse midbrain(E14.5)

Significance: 0.0039171

Significance: 0.00158216

Whole Brain(E14.5)

Significance: 0.000144016

Significance: 6.2111099999999996e-06

Unique Cell types only TF-MoDISco finds Pou4f1
Cell typeModiscoHomer
vasoactive intestinal peptide-positive (VIP) inhibitory neurons

Significance: 0.0005720769999999999

absent
No Cell types only Homer finds Pou4f1