In [1]:
# Parameters
data_name = "Nr6a1"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
In [2]:
from matlas.modisco_report import call_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-07-26 01:24:17,737 [WARNING] git-lfs not installed
In [3]:
homer_matches, modisco_matches = call_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root)
In [4]:
display_comparative_cell_types(data_name, homer_matches, modisco_matches)

TF-MoDISco is using the TensorFlow backend.

CISBP ID of Nr6a1: M6397_1.02
Shared Cell types both TF-MoDISco and Homer finds Nr6a1
Cell typeModiscoHomer
Mus musculus strain C57BL/6J R1 stem cell

Significance: 3.26384e-05

Significance: 0.000324915

Unique Cell types only TF-MoDISco finds Nr6a1
Cell typeModiscoHomer
Mus musculus strain 129S1/SVImJ ES-CJ7 stem cell male embryo

Significance: 5.98178e-06

absent
myeloid progenitor cells, CD34+ (416B)

Significance: 2.79353e-06

absent
mouse embryonic stem cells E14

Significance: 0.00017230700000000002

Significance: 0.00138893

absent
No Cell types only Homer finds Nr6a1