# Parameters
data_name = "Nr1i3"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False

from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:25:27,212 [WARNING] git-lfs not installed

homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.

display_comparative_cell_types(data_name, homer_matches, modisco_matches)

Nr1i3: Motif: M09302_2.00

Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Nr1i3: #1

Cell type	Modisco	Homer
wES;posterior;2;E9.5;A;GEO	Pattern: metacluster_0/pattern_8 Significance: 0.0542071	Pattern: motif9.motif Significance: 0.033951

Unique Cell types only TF-MoDISco finds Nr1i3: #11

Cell type	Modisco	Homer
wES;5th_Rhmbmr;E8.5;A;GEO	Pattern: metacluster_0/pattern_5 Significance: 0.058404700000000004	Absent
npES;5th_Rhmbmr_delA;E8.5;A;GEO	Pattern: metacluster_0/pattern_14 Significance: 0.0516151	Absent
wES;posterior;1;E9.5;A;GEO	Pattern: metacluster_1/pattern_12 Significance: 0.0500626	Absent
wES;posterior;1;E8.5;A;GEO	Pattern: metacluster_0/pattern_21 Significance: 0.013270400000000002	Absent
npES;posterior_delA;E8.5;A;GEO	Pattern: metacluster_0/pattern_13 Significance: 0.0580216	Absent
npES;posterior_delC;E8.5;A;GEO	Pattern: metacluster_0/pattern_24 Significance: 0.0246097	Absent
wES;MSDRM;E11.5;D;En	Pattern: metacluster_0/pattern_11 Significance: 0.016697200000000002	Absent
npES;3rd_Rhmbmr_delA;E8.5;A;GEO	Pattern: metacluster_0/pattern_15 Significance: 0.0587592	Absent
wES;3rd_Rhmbmr;E8.5;A;GEO	Pattern: metacluster_0/pattern_14 Significance: 0.053231600000000004	Absent
npES;3rd_Rhmbmr_delC;E8.5;A;GEO	Pattern: metacluster_0/pattern_13 Significance: 0.050070300000000005	Absent
wES;5th_Rhmbmr;E9.5;A;GEO	Pattern: metacluster_0/pattern_10 Significance: 0.0146909	Absent

No Cell types only Homer finds Nr1i3