In [1]:
# Parameters
data_name = "Mbd1"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
In [2]:
from matlas.modisco_report import call_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-07-26 00:49:41,685 [WARNING] git-lfs not installed
In [3]:
homer_matches, modisco_matches = call_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root)
In [4]:
display_comparative_cell_types(data_name, homer_matches, modisco_matches)

TF-MoDISco is using the TensorFlow backend.

CISBP ID of Mbd1: M0613_1.02
Shared Cell types both TF-MoDISco and Homer finds Mbd1
Cell typeModiscoHomer
Unique Cell types only TF-MoDISco finds Mbd1
Cell typeModiscoHomer
Large Intestine

Significance: 0.0472796

absent
Unique Cell types only Homer finds Mbd1
Cell typeModiscoHomer
cerebellar granule cell precursors(wt)absent

Significance: 0.059865800000000004

Granule Neuron Progenitors (wt)absent

Significance: 0.0333043

E14 ES cellsabsent

Significance: 0.088752

Brain- Medulla Oblongataabsent

Significance: 0.00559998