# Parameters
data_name = "Klf2"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"

from matlas.modisco_report import call_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-07-26 00:40:03,495 [WARNING] git-lfs not installed

homer_matches, modisco_matches = call_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root)

display_comparative_cell_types(data_name, homer_matches, modisco_matches)

TF-MoDISco is using the TensorFlow backend.

CISBP ID of Klf2: M6127_1.02

Shared Cell types both TF-MoDISco and Homer finds Klf2

Cell type	Modisco	Homer

Unique Cell types only TF-MoDISco finds Klf2

Cell type	Modisco	Homer
Liver(E14.5)	Significance: 0.00187681	absent
Lung(adult-8wks)	Significance: 1.83065e-05	absent
Erythroblasts	Significance: 0.00235632	absent
ES cells (E14)	Significance: 9.75127e-09	absent
TCR SV40-I CD8 T cells isolated D5 from early malignant lesions	Significance: 6.31038e-05	absent
Megakaryocyte-erythroid progenitor cell	Significance: 8.563919999999999e-06	absent

Unique Cell types only Homer finds Klf2

Cell type	Modisco	Homer
liver(P0)	absent	Significance: 0.000140953
adult skin epithelia	absent	Significance: 6.217890000000001e-05
Embryonic day 0 (stem cell, ES-CJ7)	absent	Significance: 7.27199e-05
Murine B-lymphoma cell line(A20 cell line)	absent	Significance: 0.00693563
MEL cell line	absent	Significance: 0.00214467
CD8 Tcells(day35 post infection LCMV)	absent	Significance: 0.00375886
Large Intestine	absent	Significance: 0.000157887
Lung	absent	Significance: 0.00262424
Spleen CD8+ T cell(SLEC)	absent	Significance: 0.000571304
Act B cell 24h	absent	Significance: 0.00273788
ZHBTC4 ES untreated	absent	Significance: 5.39533e-05
Mus musculus strain C57BL/6J R1 stem cell	absent	Significance: 5.9122e-05
Spleen CD8+ T cell(MPEC)	absent	Significance: 0.00188346
Tfr (CD4+CD44+CXCR5+PD1+CD25+) MUT	absent	Significance: 0.000788179
mouse embryo fibroblasts/3T3-L1	absent	Significance: 0.00246986
Mus musculus strain 129S1/SVImJ ES-CJ7 stem cell male embryo	absent	Significance: 9.46434e-05