# Parameters
data_name = "Klf16"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"

from matlas.modisco_report import call_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-07-26 00:39:21,090 [WARNING] git-lfs not installed

homer_matches, modisco_matches = call_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root)

display_comparative_cell_types(data_name, homer_matches, modisco_matches)

TF-MoDISco is using the TensorFlow backend.

CISBP ID of Klf16: M5593_1.02

Shared Cell types both TF-MoDISco and Homer finds Klf16

Cell type	Modisco	Homer

Unique Cell types only TF-MoDISco finds Klf16

Cell type	Modisco	Homer
TCR SV40-I CD8 T cells isolated D35 from early malignant lesions	Significance: 1.71653e-06	absent
CD25CCR6 DN CD4 (memory CD4+ T cell)	Significance: 1.40814e-06	absent
embryo hindlimb buds (E11.5)	Significance: 1.6737099999999998e-06	absent
proB cells	Significance: 1.7276900000000001e-06	absent
preB cells	Significance: 3.0825e-06	absent
memory TCR SV40-I CD8 T cells isolated D35 from established tumors (with listeria immunization)	Significance: 1.9012000000000001e-06	absent
Invariant NKT (iNKT) cells	Significance: 1.77049e-06	absent
Act B cell	Significance: 6.553610000000001e-07	absent
Mouse hematopoietic suspension cell line positive for CD34(416B cell line)	Significance: 1.08251e-06	absent
dendritic cell(100 ng/mL Lipopolysaccharide, 6hours)	Significance: 6.73199e-07	absent
basophils	Significance: 7.361079999999999e-07	absent
Tfh (CD4+CD44+CXCR5+PD1+CD25-) WT	Significance: 9.79801e-07	absent
embryo_5th rhombomere(E8.5, deltaC)	Significance: 1.03123e-05	absent
CD4+CD8+ CD69lo large (DP precursors)	Significance: 6.51995e-06	absent
CD4+CD8+ CD69lo small (DP precursors)	Significance: 3.2900199999999995e-06	absent
adult skin epithelia	Significance: 0.00018554900000000002	absent
DN3b	Significance: 1.3456999999999999e-06	absent
Granule Neuron Progenitors (wt)	Significance: 4.35749e-06	absent
Thymus MECs (Aire+/+)	Significance: 1.41759e-06	absent
Lung	Significance: 1.7531200000000001e-06	absent
Heart	Significance: 2.67177e-06	absent
Adipose	Significance: 3.7606e-07	absent
placenta	Significance: 5.84064e-06	absent
stomach	Significance: 1.79137e-06	absent
dendritic in vitro differentiated cells	Significance: 1.15541e-06	absent
Long Term HSC	Significance: 2.5452000000000002e-06	absent
ILC2 (Nippo infected)	Significance: 2.2865700000000003e-06	absent
ch12 with quintuple mt	Significance: 2.26692e-06	absent
ch12 wt	Significance: 3.1259100000000003e-06	absent
ch12 wt with drug	Significance: 3.26654e-06	absent
CLP	Significance: 3.1478500000000003e-06	absent
kidney (P0)	Significance: 1.6937200000000001e-06	absent
ESC(129SV/Jae/C57BL6J)	Significance: 6.80289e-06	absent
Adipose tissue	Significance: 1.3019399999999998e-06	absent
ILC3(WT)	Significance: 8.899989999999999e-07	absent
ILC3_AbxGermFree	Significance: 1.2358700000000001e-06	absent
central memory TCR SV40-I CD8 T cells	Significance: 7.002519999999999e-07	absent

Unique Cell types only Homer finds Klf16

Cell type	Modisco	Homer
Eye- Neural retina	absent	Significance: 2.69959e-05
Brain- Frontal Cortex	absent	Significance: 0.0118324
ILC2(WT)	absent	Significance: 0.000890492
CD4-positive helper(adult-8wks, Activated primary CD4 effector cells)	absent	Significance: 0.015452100000000002
Naive splenic CD4+ T-cells	absent	Significance: 0.00105555
aB aCD40+IL4	absent	Significance: 0.00929462
mast cells	absent	Significance: 0.0603971