# Parameters
data_name = "Hivep1"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"

from matlas.modisco_report import call_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-07-26 00:17:16,664 [WARNING] git-lfs not installed

homer_matches, modisco_matches = call_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root)

display_comparative_cell_types(data_name, homer_matches, modisco_matches)

TF-MoDISco is using the TensorFlow backend.

CISBP ID of Hivep1: M6544_1.02

Shared Cell types both TF-MoDISco and Homer finds Hivep1

Cell type	Modisco	Homer

Unique Cell types only TF-MoDISco finds Hivep1

Cell type	Modisco	Homer
NK cells (liver), CD19-CD3ε-NKp46+DX5+Trail-	Significance: 0.00620988	absent
CD4+CD8-TCRhi CD69hi CD24hi CD25-(B2m def mice)	Significance: 0.000277928	absent
CD4-CD8+ TCRhi CD69lo CD24lo (MHCII def mice)	Significance: 0.00070818	absent
Blast-cultured splenic CD4+ T-cells	Significance: 0.00010844700000000001	absent
Spleen CD8+ T cell (Exhausted)	Significance: 0.000210523	absent
naive transgenic TCR SV40-I CD8 T cells	Significance: 0.00127118	absent
naive CD4+ T (CD4+ CD44-CD62L- CD25-) MUT	Significance: 0.000866867	absent

Unique Cell types only Homer finds Hivep1

Cell type	Modisco	Homer
CD4+CD8-TCRhi CD25+ Foxp3+	absent	Significance: 0.000523276
ILC2(WT)	absent	Significance: 0.000502458
CD4-positive helper(adult-8wks, Activated primary CD4 effector cells)	absent	Significance: 0.000443098
aB LPS	absent	Significance: 0.00641608
Regulatory T cells CD4+,CD25+	absent	Significance: 0.00058467
aB LPS+a-d-dextran	absent	Significance: 0.00107108
ILC2 precursor	absent	Significance: 7.56237e-05
Activated primary CD4 effector cells, isolated ex vivo	absent	Significance: 0.000573654
mouse spleen B cells, CD43-,CD11b- (immature B cells)	absent	Significance: 0.00029518700000000003
CH12.LX cell line	absent	Significance: 0.00031239
Tfh (CD4+CD44+CXCR5+PD1+CD25-) WT	absent	Significance: 0.00711244
Act B cell 24h	absent	Significance: 0.011518299999999999
ch12 med14 mt	absent	Significance: 0.0006888780000000001