# Parameters
data_name = "Grhl1"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"

from matlas.modisco_report import call_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-07-26 00:13:37,052 [WARNING] git-lfs not installed

homer_matches, modisco_matches = call_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root)

display_comparative_cell_types(data_name, homer_matches, modisco_matches)

TF-MoDISco is using the TensorFlow backend.

CISBP ID of Grhl1: M5497_1.02

Shared Cell types both TF-MoDISco and Homer finds Grhl1

Cell type	Modisco	Homer
Adipose tissue	Significance: 1.6077e-08	Significance: 0.011268299999999998
embryonic facial prominence(e14.5)	Significance: 1.60541e-06	Significance: 0.046605099999999997
Embryonic Stem Cells(v6.5)	Significance: 0.0010672000000000001	Significance: 0.0574856
Small Intestine	Significance: 1.50463e-05	Significance: 0.0474889

Unique Cell types only TF-MoDISco finds Grhl1

Cell type	Modisco	Homer
mixed embryonic mouse limb(E14.5)	Significance: 3.04887e-06	absent
embryo hindlimb buds (E11.5)	Significance: 0.00022166200000000002	absent
Large Intestine (adult-8wks)	Significance: 6.227129999999999e-07	absent
stomach(P0)	Significance: 1.36704e-06	absent
ES_derived Definitive Endoderm	Significance: 0.014746200000000001	absent
embryo_5th rhombomere (E8.5. deltaA)	Significance: 2.13178e-06	absent
adult skin epithelia	Significance: 5.4718e-07	absent
Mouse back skin	Significance: 5.19521e-07	absent
Thymus MECs (Aire+/+)	Significance: 8.56757e-08	absent
Large Intestine	Significance: 5.8794e-07	absent
Lung	Significance: 3.16981e-07	absent
ZHBTC4 ES doxycycline-treated	Significance: 6.148049999999999e-08	absent
ZHBTC4 ES Brg1fl/fl untreated	Significance: 0.000170465	absent
Mammary tissue	Significance: 3.98117e-06	absent
JM8.N4 Asynchronous	Significance: 0.0046292	absent
JM8.N4 Mitosis	Significance: 4.952729999999999e-07	absent
placenta	Significance: 9.746e-07	absent
stomach	Significance: 6.92012e-06	absent
Lung (adult-8wks)	Significance: 0.00119738	absent
Mus musculus strain C57BL/6J R1 stem cell	Significance: 0.00048179099999999997	absent
Kidney(adult-8wks)	Significance: 0.000254748	absent
E14 ES cells	Significance: 0.00020282	absent
mouse embryonic stem cells (F1216)	Significance: 1.39016e-06	absent
Lung(adult-8wks)	Significance: 0.000401317	absent
lung(P0)	Significance: 4.6840499999999996e-07	absent
Mouse lung (E14.5)	Significance: 1.00647e-06	absent

Unique Cell types only Homer finds Grhl1

Cell type	Modisco	Homer
Liver(E14.5)	absent	Significance: 0.0467535
dendritic cell(100 ng/mL Lipopolysaccharide, 4hours)	absent	Significance: 0.0480696
mature B cells	absent	Significance: 0.09496210000000001
Brain- Cerebellum	absent	Significance: 0.0389637
aB LPS+IL4	absent	Significance: 0.0111273