In [1]:
# Parameters
data_name = "Ferd3l"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
In [2]:
from matlas.modisco_report import call_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-07-25 23:52:13,729 [WARNING] git-lfs not installed
In [3]:
homer_matches, modisco_matches = call_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root)
In [4]:
display_comparative_cell_types(data_name, homer_matches, modisco_matches)

TF-MoDISco is using the TensorFlow backend.

CISBP ID of Ferd3l: M4971_1.02
Shared Cell types both TF-MoDISco and Homer finds Ferd3l
Cell typeModiscoHomer
Unique Cell types only TF-MoDISco finds Ferd3l
Cell typeModiscoHomer
Heart

Significance: 0.00522144

absent
Unique Cell types only Homer finds Ferd3l
Cell typeModiscoHomer
lung(P0)absent

Significance: 0.00996196

proB cellsabsent

Significance: 0.0220577

preB cellsabsent

Significance: 0.0226942

plasma cellsabsent

Significance: 0.00329914

Granule Neuron Progenitors (wt)absent

Significance: 0.00112545