In [1]:
# Parameters
data_name = "Egr4"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
In [2]:
from matlas.modisco_report import call_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-07-25 23:38:45,410 [WARNING] git-lfs not installed
In [3]:
homer_matches, modisco_matches = call_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root)
In [4]:
display_comparative_cell_types(data_name, homer_matches, modisco_matches)

TF-MoDISco is using the TensorFlow backend.

CISBP ID of Egr4: M6201_1.02
Shared Cell types both TF-MoDISco and Homer finds Egr4
Cell typeModiscoHomer
Unique Cell types only TF-MoDISco finds Egr4
Cell typeModiscoHomer
ZHBTC4 ES untreated

Significance: 0.0218665

absent
Unique Cell types only Homer finds Egr4
Cell typeModiscoHomer
cerebellar granule cell precursors(wt)absent

Significance: 0.012894799999999998