In [1]:
# Parameters
data_name = "Atf6"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
In [2]:
from matlas.modisco_report import call_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-07-25 23:12:02,601 [WARNING] git-lfs not installed
In [3]:
homer_matches, modisco_matches = call_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root)
In [4]:
display_comparative_cell_types(data_name, homer_matches, modisco_matches)

TF-MoDISco is using the TensorFlow backend.

CISBP ID of Atf6: M6155_1.02
Shared Cell types both TF-MoDISco and Homer finds Atf6
Cell typeModiscoHomer
Unique Cell types only TF-MoDISco finds Atf6
Cell typeModiscoHomer
murine mammary adenocarcinoma cell line(3134 cell line)

Significance: 0.019431

absent
Unique Cell types only Homer finds Atf6
Cell typeModiscoHomer
embryo_5th rhombomere (E8.5. deltaA)absent

Significance: 0.0309332

neural tube embryo(E11.5)absent

Significance: 0.013023400000000001

mature B cellsabsent

Significance: 0.09130830000000001

Retina(newborn 1 day)absent

Significance: 0.00765684

GC B cellsabsent

Significance: 0.0405721

ILC3_AbxGermFreeabsent

Significance: 0.0246502

vasoactive intestinal peptide-positive (VIP) inhibitory neuronsabsent

Significance: 0.023400999999999998

basophilsabsent

Significance: 0.0188474

Mus musculus strain 129S1/SVImJ ES-CJ7 stem cell male embryoabsent

Significance: 0.034743500000000004

Whole Brain(E14.5)absent

Significance: 0.019925