# Parameters
data_name = "9430076C15Rik"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"

from matlas.modisco_report import call_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-07-25 23:08:10,771 [WARNING] git-lfs not installed

homer_matches, modisco_matches = call_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root)

display_comparative_cell_types(data_name, homer_matches, modisco_matches)

TF-MoDISco is using the TensorFlow backend.

CISBP ID of 9430076C15Rik: M5998_1.02

Shared Cell types both TF-MoDISco and Homer finds 9430076C15Rik

Cell type	Modisco	Homer
ILC2+IL33+IL25	Significance: 8.7129e-05	Significance: 0.0108305
BptfKO Mammary Cells	Significance: 1.53685e-05	Significance: 0.00062803
gamma delta TCR wt	Significance: 0.000488962	Significance: 0.000129159

Unique Cell types only TF-MoDISco finds 9430076C15Rik

Cell type	Modisco	Homer
naive CD8	Significance: 0.000199126	absent
CD25CCR6 DN CD4 (memory CD4+ T cell)	Significance: 1.4032e-05	absent
Th17 CD4	Significance: 1.8808e-05	absent
NK cells (spleen)	Significance: 8.198520000000001e-05	absent
memory TCR SV40-I CD8 T cells isolated D14 from established tumors (with listeria immunization)	Significance: 8.229539999999999e-06	absent
embryonic facial prominence(e14.5)	Significance: 1.47726e-05	absent
memory TCR SV40-I CD8 T cells isolated D14 from established tumors (without listeria immunization)	Significance: 3.2588799999999997e-06	absent
skeletal muscle tissue(adult-8wks)	Significance: 1.57302e-05	absent
mast cells	Significance: 0.000298697	absent
basophils	Significance: 4.40174e-06	absent
dendritic cell(100 ng/mL Lipopolysaccharide, 6hours)	Significance: 1.93929e-05	absent
cholinergic motor neuron cell line MN1 treated with 10 nM methyltrienolone	Significance: 9.761849999999999e-06	absent
Tfr (CD4+CD44+CXCR5+PD1+CD25+) WT	Significance: 5.748089999999999e-06	absent
CD4+CD8-TCRhi CD69hi CD24hi CD25-(B2m def mice)	Significance: 0.000702485	absent
Mouse back skin	Significance: 2.95308e-05	absent
BMDCs(dendritic cell)	Significance: 3.6020999999999998e-06	absent
parvalbumin-positive (PV) inhibitory neurons	Significance: 3.4389099999999997e-06	absent
Cortical excitatory neurons	Significance: 0.000754784	absent
Large Intestine	Significance: 0.000467397	absent
Mammary tissue	Significance: 0.00298325	absent
placenta	Significance: 1.1515799999999998e-06	absent
Brain- Olfactory Bulb	Significance: 8.12888e-05	absent
Brain- Putamen	Significance: 0.000146371	absent
Brain- Sensorimotor Cortex	Significance: 2.79585e-05	absent
Liver (Adult 8 weeks)	Significance: 0.000631943	absent
Lung (adult-8wks)	Significance: 0.0005332819999999999	absent
gamma delta TCR Marco	Significance: 3.11318e-05	absent
gamma delta TCR M/S -/-	Significance: 0.000113856	absent
NK (+IL2+IL12)	Significance: 1.08695e-05	absent
Naive splenic CD4+ T-cells	Significance: 0.00013333100000000001	absent
ILC2 (Nippo infected)	Significance: 0.00020541	absent
Whole Brain (adult-8wks)	Significance: 2.98589e-05	absent
ILC2	Significance: 0.000254158	absent
Act B cell 24h with oligomycin	Significance: 0.00044080300000000003	absent
kidney (P0)	Significance: 1.01292e-05	absent
Kidney(adult-8wks)	Significance: 0.000522745	absent
NK cells (liver), CD19-CD3ε-NKp46+DX5+Trail-	Significance: 5.80939e-05	absent
Neutrophils(wt)	Significance: 3.75736e-05	absent
Liver(adult-8wks)	Significance: 3.74134e-05	absent
heart tissue(P0)	Significance: 1.91929e-06	absent
ILC1(WT)	Significance: 1.95836e-05	absent
ILC2(WT)	Significance: 2.58573e-05	absent
Cerebellum	Significance: 2.27729e-05	absent
ILC1_AbxGermFree	Significance: 0.000231342	absent
ILC3_AbxGermFree	Significance: 1.1836e-05	absent
CD8 Tcells(day35 post infection LCMV)	Significance: 1.99059e-05	absent
mixed embryonic mouse forebrain(E14.5)	Significance: 6.82467e-06	absent
mixed mouse hindbrain(P0)	Significance: 5.40003e-05	absent
TCR SV40-I CD8 T cells isolated D7 from early malignant lesions	Significance: 1.2161e-05	absent
TCR SV40-I CD8 T cells isolated D14 from early malignant lesions	Significance: 2.95455e-05	absent

Unique Cell types only Homer finds 9430076C15Rik

Cell type	Modisco	Homer
TCR SV40-I CD8 T cells isolated D60 from early malignant lesions	absent	Significance: 0.0253584
embryo_posterior part (E8.5, wt)	absent	Significance: 0.0132578
adult skin epithelia	absent	Significance: 0.000104962
Muller cell(P12)	absent	Significance: 8.85764e-07
rod photoreceptors	absent	Significance: 0.00446733
Heart	absent	Significance: 7.063610000000001e-06
ZHBTC4 ES Brg1fl/fl untreated	absent	Significance: 0.0219447