from matlas.matches import DenovoModisco, DenovoHomer
from vdom.helpers import (b, summary)
from IPython.display import display
import numpy as np

def adjust_motifs(ob):
    for motif_name in ob.denovo_pwms.keys():
        a = ob.get_pwm(motif_name)
        ones = np.sum(a, axis=1)
        for i, one in enumerate(ones):
            if (one-1.0)!=1:
            #print('decrease', motif_name, i)
                part = (one-1.0)/4
                ob.denovo_pwms[motif_name]['PPM'][i] -= part
    
    return ob

def display_paiwise_pattern_comparison(task_idx, sample_name, modiscodir, homerdir):
    display(summary(b(sample_name + " (differential regions)")))
    
    homer_ob = DenovoHomer(homerdir)
    #homer_ob.fetch_tomtom_matches(save_report=True, 
    #                              tomtom_dir= "{0}/{1}_tomtomout".format(homerdir, "CISBP_2.00"))
    
    homer_ob.load_matched_motifs()
    homer_ob.get_motif_per_celltype()

    modisco_ob = DenovoModisco(modiscodir)
    modisco_ob.load_matched_motifs()
    modisco_ob.get_motif_per_celltype()

    modisco_ob.display_pairwise_tf_table(homer_ob)
    return None

def display_denovo_patterns(sample_name, modiscodir, match_threshold=0.05):
    display(summary(b(sample_name)))
    
    ob = DenovoModisco(modiscodir)
    
    ob.load_matched_motifs()
    ob.get_motif_per_celltype(match_threshold=match_threshold)
    ob.display_individual_table()
    
    return None

root = "/mnt/lab_data/kundaje/users/msharmin/NSC_ATAC_PEAKS_to_share"
task_idx = 4
sample_name = 'qNSC_Old'

display_denovo_patterns(
    sample_name,
    modiscodir="{0}/gw_modisco/multi_tasks/{1}".format(root, sample_name)
)

root = "/mnt/lab_data/kundaje/users/msharmin/NSC_ATAC_PEAKS_to_share"
task_idx = 4
sample_name = 'qNSC_Old'
display_paiwise_pattern_comparison(
    task_idx, sample_name, 
    modiscodir="{0}/gw_modisco/multi_tasks/{1}".format(root, sample_name),
    homerdir="{0}/size_gvn_nobkg/{1}".format(root, sample_name),
)