FimoVsDeepliftReport

In [1]:

from matlas.fimo_hits import display_verification_results

TF-MoDISco is using the TensorFlow backend.

load data from labcluster

In [2]:

from matlas.fimo_hits import display_oc_samples_with_tfatlas
display_oc_samples_with_tfatlas()

Following samples have at least one TF ChIPSeq in ENCODE. Clicking each link will take you to the set of information we gathered to verify the goodness of instance calling by FIMO and Deeplift

Bone marrow derived pre-B cell

bone marrow-derived macrophages (Unstimulated)

bone marrow-derived macrophages(Lipid A stimulation 120min)

Cortical excitatory neurons

Thymus MECs (Aire+/+)

Megakaryocyte primary cell

Erythroblast primary cell

Megakaryocyte progenitor cell

Liver (Adult 8 weeks)

Lung (adult-8wks)

Fibroblast (adult-8wks)

Kidney(adult-8wks)

Liver(adult-8wks)

Liver(E14.5)

Lung(adult-8wks)

Mouse lung (E14.5)

Heart (adult-8wks)

mixed embryonic mouse retina(E14.5)

Cerebellum

mixed embryonic mouse forebrain(E14.5)

mixed embryonic mouse hindbrain(E11.5)

hindbrain embryo(E14.5)

mixed embryonic mouse midbrain(E14.5)

midbrain embryo(E11.5)

Large Intestine (adult-8wks)

MEL cell line treated with 125 uM zinc dichloride for 24 hours

macrophage

Small Intestine

Large Intestine

Lung

Heart

testis

stomach

Brain- Olfactory Bulb

Brain- Cerebellum

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