In [1]:
%load_ext autoreload
%autoreload 2
In [9]:
from matlas.fimo_hits import display_verification_results
display_verification_results('Bhlhe40', 
                            '/mnt/lab_data2/msharmin/tf-mouse-atlas/chip_idrs/ENCFF981ENW.bed.gz', 
                            '/mnt/lab_data/kundaje/msharmin/mouse_hem/mtf/various_hits/task_273/Bhlhe40', 
                            'BHLHE40-mouse')

/users/msharmin/code/mouse-atlas/matlas/fimo_hits.py:896: SettingWithCopyWarning: 
A value is trying to be set on a copy of a slice from a DataFrame

See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
  df['peak-type'][df['peak-type']==key] = val
Enrichment of Bhlhe40 at BHLHE40-mouse ChIPSeq 
<Figure size 432x288 with 0 Axes>
In [10]:
display_verification_results('Ctcf', 
                            '/mnt/lab_data2/msharmin/tf-mouse-atlas/chip_idrs/ENCFF235LMU.bed.gz', 
                            '/mnt/lab_data/kundaje/msharmin/mouse_hem/mtf/various_hits/task_273/Ctcf', 
                            'CTCF-mouse')
Enrichment of Ctcf at CTCF-mouse ChIPSeq 
<Figure size 432x288 with 0 Axes>
In [11]:
display_verification_results('E2f4', 
'/mnt/lab_data2/msharmin/tf-mouse-atlas/chip_idrs/ENCFF624HQU.bed.gz', 
'/mnt/lab_data/kundaje/msharmin/mouse_hem/mtf/various_hits/task_273/E2f4', 
'E2F4-mouse')
Enrichment of E2f4 at E2F4-mouse ChIPSeq 
<Figure size 432x288 with 0 Axes>
In [12]:
display_verification_results('Elf1', 
'/mnt/lab_data2/msharmin/tf-mouse-atlas/chip_idrs/ENCFF885EHG.bed.gz', 
'/mnt/lab_data/kundaje/msharmin/mouse_hem/mtf/various_hits/task_273/Elf1', 
'ELF1-mouse')

/users/msharmin/anaconda2/envs/basepair13/lib/python3.6/site-packages/ipykernel_launcher.py:4: DtypeWarning: Columns (11,13,14,15,16) have mixed types. Specify dtype option on import or set low_memory=False.
  after removing the cwd from sys.path.
Enrichment of Elf1 at ELF1-mouse ChIPSeq 
<Figure size 432x288 with 0 Axes>
In [13]:
display_verification_results('Ep300', 
'/mnt/lab_data2/msharmin/tf-mouse-atlas/chip_idrs/ENCFF375GXQ.bed.gz', 
'/mnt/lab_data/kundaje/msharmin/mouse_hem/mtf/various_hits/task_273/Ep300', 
'EP300-mouse'
)
Enrichment of Ep300 at EP300-mouse ChIPSeq 
<Figure size 432x288 with 0 Axes>
In [14]:
display_verification_results('Ets1', 
'/mnt/lab_data2/msharmin/tf-mouse-atlas/chip_idrs/ENCFF054PAU.bed.gz', 
'/mnt/lab_data/kundaje/msharmin/mouse_hem/mtf/various_hits/task_273/Ets1', 
'ETS1-mouse')

/users/msharmin/anaconda2/envs/basepair13/lib/python3.6/site-packages/ipykernel_launcher.py:4: DtypeWarning: Columns (11,13,14,15,16) have mixed types. Specify dtype option on import or set low_memory=False.
  after removing the cwd from sys.path.
Enrichment of Ets1 at ETS1-mouse ChIPSeq 
<Figure size 432x288 with 0 Axes>
In [15]:
display_verification_results('Gabpa', 
'/mnt/lab_data2/msharmin/tf-mouse-atlas/chip_idrs/ENCFF627TGO.bed.gz', 
'/mnt/lab_data/kundaje/msharmin/mouse_hem/mtf/various_hits/task_273/Gabpa', 
'GABPA-mouse')
Enrichment of Gabpa at GABPA-mouse ChIPSeq 
<Figure size 432x288 with 0 Axes>
In [ ]:
display_verification_results('Gata1', 
'/mnt/lab_data2/msharmin/tf-mouse-atlas/chip_idrs/ENCFF451ZPC.bed.gz', 
'/mnt/lab_data/kundaje/msharmin/mouse_hem/mtf/various_hits/task_273/Gata1', 
'GATA1-mouse'
)
Enrichment of Gata1 at GATA1-mouse ChIPSeq 
<Figure size 432x288 with 0 Axes>
In [ ]:
display_verification_results('Jund', 
'/mnt/lab_data2/msharmin/tf-mouse-atlas/chip_idrs/ENCFF589AAH.bed.gz', 
'/mnt/lab_data/kundaje/msharmin/mouse_hem/mtf/various_hits/task_273/Jund', 
'JUND-mouse')
Enrichment of Jund at JUND-mouse ChIPSeq 
<Figure size 432x288 with 0 Axes>
In [ ]:
display_verification_results('Mafk', 
'/mnt/lab_data2/msharmin/tf-mouse-atlas/chip_idrs/ENCFF006XAF.bed.gz', 
'/mnt/lab_data/kundaje/msharmin/mouse_hem/mtf/various_hits/task_273/Mafk', 
'MAFK-mouse')
Enrichment of Mafk at MAFK-mouse ChIPSeq 
<Figure size 432x288 with 0 Axes>
In [ ]:
display_verification_results('Max', 
'/mnt/lab_data2/msharmin/tf-mouse-atlas/chip_idrs/ENCFF716KJE.bed.gz', 
'/mnt/lab_data/kundaje/msharmin/mouse_hem/mtf/various_hits/task_273/Max', 
'MAX-mouse')
Enrichment of Max at MAX-mouse ChIPSeq 
<Figure size 432x288 with 0 Axes>
In [ ]:
display_verification_results('Maz', 
'/mnt/lab_data2/msharmin/tf-mouse-atlas/chip_idrs/ENCFF647MPR.bed.gz', 
'/mnt/lab_data/kundaje/msharmin/mouse_hem/mtf/various_hits/task_273/Maz', 
'MAZ-mouse')

/users/msharmin/anaconda2/envs/basepair13/lib/python3.6/site-packages/ipykernel_launcher.py:4: DtypeWarning: Columns (11,13,14,15,16) have mixed types. Specify dtype option on import or set low_memory=False.
  after removing the cwd from sys.path.
In [ ]:
display_verification_results('Mef2a', 
'/mnt/lab_data2/msharmin/tf-mouse-atlas/chip_idrs/ENCFF044OUI.bed.gz', 
'/mnt/lab_data/kundaje/msharmin/mouse_hem/mtf/various_hits/task_273/Mef2a', 
'MEF2A-mouse')
In [ ]:
display_verification_results('Mxi1', 
'/mnt/lab_data2/msharmin/tf-mouse-atlas/chip_idrs/ENCFF473GQJ.bed.gz', 
'/mnt/lab_data/kundaje/msharmin/mouse_hem/mtf/various_hits/task_273/Mxi1', 
'MXI1-mouse'
)
In [ ]:
display_verification_results('Myb', 
'/mnt/lab_data2/msharmin/tf-mouse-atlas/chip_idrs/ENCFF345FTL.bed.gz', 
'/mnt/lab_data/kundaje/msharmin/mouse_hem/mtf/various_hits/task_273/Myb', 
'MYB-mouse')
In [ ]:
display_verification_results('Myc', 
'/mnt/lab_data2/msharmin/tf-mouse-atlas/chip_idrs/ENCFF573INC.bed.gz', 
'/mnt/lab_data/kundaje/msharmin/mouse_hem/mtf/various_hits/task_273/Myc', 
'MYC-mouse')
In [ ]:
display_verification_results('Nrf1', 
'/mnt/lab_data2/msharmin/tf-mouse-atlas/chip_idrs/ENCFF443MGH.bed.gz', 
'/mnt/lab_data/kundaje/msharmin/mouse_hem/mtf/various_hits/task_273/Nrf1', 
'NRF1-mouse')
In [ ]:
display_verification_results('Tal1', 
'/mnt/lab_data2/msharmin/tf-mouse-atlas/chip_idrs/ENCFF047ODZ.bed.gz', 
'/mnt/lab_data/kundaje/msharmin/mouse_hem/mtf/various_hits/task_273/Tal1', 
'TAL1-mouse')
In [ ]:
display_verification_results('Tbp', 
'/mnt/lab_data2/msharmin/tf-mouse-atlas/chip_idrs/ENCFF700PEG.bed.gz', 
'/mnt/lab_data/kundaje/msharmin/mouse_hem/mtf/various_hits/task_273/Tbp', 
'TBP-mouse')
In [ ]:
display_verification_results('Tcf12', 
'/mnt/lab_data2/msharmin/tf-mouse-atlas/chip_idrs/ENCFF551TDS.bed.gz', 
'/mnt/lab_data/kundaje/msharmin/mouse_hem/mtf/various_hits/task_273/Tcf12', 
'TCF12-mouse')
In [ ]:
display_verification_results('Usf1', 
'/mnt/lab_data2/msharmin/tf-mouse-atlas/chip_idrs/ENCFF987ZSZ.bed.gz', 
'/mnt/lab_data/kundaje/msharmin/mouse_hem/mtf/various_hits/task_273/Usf1', 
'USF1-mouse')
In [ ]:
display_verification_results('Usf2', 
'/mnt/lab_data2/msharmin/tf-mouse-atlas/chip_idrs/ENCFF847VTQ.bed.gz', 
'/mnt/lab_data/kundaje/msharmin/mouse_hem/mtf/various_hits/task_273/Usf2', 
'USF2-mouse')
In [ ]:
display_verification_results('Zkscan1', 
'/mnt/lab_data2/msharmin/tf-mouse-atlas/chip_idrs/ENCFF066CEV.bed.gz', 
'/mnt/lab_data/kundaje/msharmin/mouse_hem/mtf/various_hits/task_273/Zkscan1', 
'ZKSCAN1-mouse')
In [ ]: