# Parameters
data_name = "testis;A;CL"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
tomtom_report_root = "http://mitra.stanford.edu/kundaje/msharmin/report/tomtom_outs/cells"
task_dir = "task_60-naivegw"
perf_file = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/fineFactorized/task_60-naivegw/NaiveauPRC.txt"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
reportfile = "/mnt/lab_data/kundaje/msharmin/annotations/filtering samples_MS2.xlsx"
sheetname = "filter23"

from matlas.reports import display_metadata

load data from labcluster

Using TensorFlow backend.
2019-08-30 18:53:24,268 [WARNING] git-lfs not installed

display_metadata(data_name, perf_file, reportfile, sheetname)

Sample Information

MetaData Name	Description
Cell type	testis
Cell Group	Other Tissues
Experiment Name	ATAC
Experiment Group	Casellas Lab

Pipeline Output

replicate	Naïve overlap peaks	IDR peaks	TSS enrichment (< 8 is very poor <10 is low)	Final number of unique mapping, dup-filtered, chrM filtered reads	Number of reads in called peak regions	Fraction of reads in called peak regions	Number of reads in promoter regions	Fraction of reads in promoter regions	Number of reads in enhancer regions	Fraction of reads in enhancer regions
rep1	48630	30567	6.2186	54487274	2751281	0.0505	4037474	0.0741	18207607	0.3343

Modelling Metadata

Metric	Value
auPRC	0.7878
Calibrated Recall at 50% FDR	0.126
Number of Positive Examples in Test Data	36968
Number of Negative Examples in Test Data	8033883
Imbalance Ratio in Test Data	0.0046
Test Chromosomes	chr2, chr3, chr19

from matlas.reports import display_paiwise_pattern_comparison
from matlas.reports import display_denovo_patterns

display_denovo_patterns(data_name, modisco_root=modisco_root)

TF-MoDISco is using the TensorFlow backend.

The following two links show list of Denovo Patterns and corresponding Motifs discovered by TF-MoDISco

Click here for Denovo Patterns by TF-MoDISco: #21

Pattern Name	TF Name(s)	Modisco
metacluster_0/pattern_0 # seqlets: 1761 SequenceContrib ScoresHyp_Contrib Scores	Sp4, Sp2, Sp3, Klf3, Sp1, E2f4, Klf6, Klf4, Klf7, Egr1, Klf1, Klf8, Klf12, Zbtb17, E2f1, Egr2, Zfx, Zfp281, Sp5, Klf5, Zfp740
metacluster_0/pattern_1 # seqlets: 1718 SequenceContrib ScoresHyp_Contrib Scores	Fli1, Gabpa, Elk4, Elk1, Ets1, Erg, Elf1, Fev, Etv5, Elk3, Etv2, Etv4, Etv1, Etv6, Ehf, Elf2, Etv3, XP_911724.4, Elf5, Elf4, Elf3, Spi1, Spdef
metacluster_0/pattern_2 # seqlets: 1403 SequenceContrib ScoresHyp_Contrib Scores	Nfyb, Nfyc, Nfya, Foxi1, Pbx3
metacluster_0/pattern_3 # seqlets: 1358 SequenceContrib ScoresHyp_Contrib Scores	Creb1, Jdp2, Creb5, Atf1, Atf7, Atf2, Crem, Jun, Atf3, Xbp1, Fosl1, Mafb, Nfil3, Gmeb2, Fosl2, Jund, Tef, Gmeb1
metacluster_0/pattern_4 # seqlets: 1343 SequenceContrib ScoresHyp_Contrib Scores	Nrf1
metacluster_0/pattern_5 # seqlets: 1155 SequenceContrib ScoresHyp_Contrib Scores	Rfx1, Usf2, Mxi1, Ctcfl, Ctcf, Klf15, Wt1
metacluster_0/pattern_6 # seqlets: 820 SequenceContrib ScoresHyp_Contrib Scores	Zbtb14, Tfap2b
metacluster_0/pattern_7 # seqlets: 817 SequenceContrib ScoresHyp_Contrib Scores	Maz, Egr3, Nr1h4
metacluster_0/pattern_8 # seqlets: 803 SequenceContrib ScoresHyp_Contrib Scores	Taf1, Yy1, Zfp42
metacluster_0/pattern_9 # seqlets: 571 SequenceContrib ScoresHyp_Contrib Scores	Rfx3, Rfx2, Rfx4, Rfx7, Rfx6
metacluster_0/pattern_10 # seqlets: 540 SequenceContrib ScoresHyp_Contrib Scores
metacluster_0/pattern_11 # seqlets: 484 SequenceContrib ScoresHyp_Contrib Scores	Zbtb33
metacluster_0/pattern_12 # seqlets: 440 SequenceContrib ScoresHyp_Contrib Scores	Thap11, Zfp143, Tbx2
metacluster_0/pattern_13 # seqlets: 409 SequenceContrib ScoresHyp_Contrib Scores
metacluster_0/pattern_14 # seqlets: 287 SequenceContrib ScoresHyp_Contrib Scores	Usf1, Tfeb, Tfe3, Arntl, Tfec, Mitf, Bhlhe40, Clock, Srebf1, Arnt, Mlx, Npas2, Srebf2, Tcfl5, Mycn, Creb3l2, Max, Myc, Bhlhe41, Hlf, Rxrg
metacluster_0/pattern_15 # seqlets: 290 SequenceContrib ScoresHyp_Contrib Scores	Dbp, Rxrb
metacluster_0/pattern_16 # seqlets: 197 SequenceContrib ScoresHyp_Contrib Scores	Mybl2, Mybl1, Klf9, Irf6, E2f3, E2f6
metacluster_0/pattern_17 # seqlets: 174 SequenceContrib ScoresHyp_Contrib Scores
metacluster_0/pattern_18 # seqlets: 86 SequenceContrib ScoresHyp_Contrib Scores
metacluster_0/pattern_19 # seqlets: 43 SequenceContrib ScoresHyp_Contrib Scores
metacluster_0/pattern_20 # seqlets: 36 SequenceContrib ScoresHyp_Contrib Scores

Click here for Motifs by TF-MoDISco: #121

TF Name	Pattern(s)
Sp4	Pattern Name Modisco Significance metacluster_0/pattern_0 0.00242041 metacluster_0/pattern_7 0.00922237 metacluster_0/pattern_14 0.053264599999999995
Sp2	Pattern Name Modisco Significance metacluster_0/pattern_0 2.19798e-06 metacluster_0/pattern_5 4.5904e-06 metacluster_0/pattern_6 7.95086e-05 metacluster_0/pattern_7 3.80524e-11 metacluster_0/pattern_8 0.0310108 metacluster_0/pattern_11 0.00557598 metacluster_0/pattern_14 4.4578e-05 metacluster_0/pattern_16 1.24768e-05
Sp3	Pattern Name Modisco Significance metacluster_0/pattern_0 1.0341600000000001e-05 metacluster_0/pattern_5 4.5405e-05 metacluster_0/pattern_6 0.00042464900000000003 metacluster_0/pattern_7 6.7694e-10 metacluster_0/pattern_8 0.022816299999999998 metacluster_0/pattern_11 0.00557598 metacluster_0/pattern_14 0.00041059 metacluster_0/pattern_16 9.85125e-05
Klf3	Pattern Name Modisco Significance metacluster_0/pattern_0 2.9825799999999998e-05 metacluster_0/pattern_5 0.0008585060000000001 metacluster_0/pattern_6 0.0116458 metacluster_0/pattern_7 9.37892e-09 metacluster_0/pattern_14 0.00531886 metacluster_0/pattern_16 0.013706999999999999
Sp1	Pattern Name Modisco Significance metacluster_0/pattern_0 0.0008380169999999999 metacluster_0/pattern_5 2.1735199999999998e-05 metacluster_0/pattern_6 0.00042464900000000003 metacluster_0/pattern_7 0.000731289 metacluster_0/pattern_11 0.0247607 metacluster_0/pattern_14 0.000300893 metacluster_0/pattern_16 2.095e-05
E2f4	Pattern Name Modisco Significance metacluster_0/pattern_0 0.000423285
Klf6	Pattern Name Modisco Significance metacluster_0/pattern_0 0.0008428410000000001 metacluster_0/pattern_5 0.014026400000000001 metacluster_0/pattern_7 4.47115e-06 metacluster_0/pattern_16 0.0437486
Klf4	Pattern Name Modisco Significance metacluster_0/pattern_0 0.0200768 metacluster_0/pattern_7 0.00091201
Klf7	Pattern Name Modisco Significance metacluster_0/pattern_0 0.00117489 metacluster_0/pattern_7 0.000268464
Egr1	Pattern Name Modisco Significance metacluster_0/pattern_0 0.00278035 metacluster_0/pattern_5 0.0342205 metacluster_0/pattern_7 0.00356753
Klf1	Pattern Name Modisco Significance metacluster_0/pattern_0 0.0206752 metacluster_0/pattern_5 0.033891199999999996 metacluster_0/pattern_7 0.0191726
Klf8	Pattern Name Modisco Significance metacluster_0/pattern_0 0.00172139 metacluster_0/pattern_7 0.00057782
Klf12	Pattern Name Modisco Significance metacluster_0/pattern_0 0.0200768 metacluster_0/pattern_7 0.000523494
Zbtb17	Pattern Name Modisco Significance metacluster_0/pattern_0 0.00386044 metacluster_0/pattern_5 0.00339711 metacluster_0/pattern_6 0.029433099999999997 metacluster_0/pattern_7 0.000268464 metacluster_0/pattern_14 0.0382013 metacluster_0/pattern_16 0.00223051
E2f1	Pattern Name Modisco Significance metacluster_0/pattern_0 0.00805408
Egr2	Pattern Name Modisco Significance metacluster_0/pattern_0 0.046299900000000005 metacluster_0/pattern_7 0.0119973
Zfx	Pattern Name Modisco Significance metacluster_0/pattern_0 0.0206752 metacluster_0/pattern_5 0.00344136 metacluster_0/pattern_6 0.00218333 metacluster_0/pattern_7 0.000731289 metacluster_0/pattern_11 0.00474658 metacluster_0/pattern_14 0.026680400000000003 metacluster_0/pattern_16 0.000904643
Zfp281	Pattern Name Modisco Significance metacluster_0/pattern_0 0.0206752 metacluster_0/pattern_7 0.05466569999999999 metacluster_0/pattern_16 0.0564073
Sp5	Pattern Name Modisco Significance metacluster_0/pattern_0 0.0206752 metacluster_0/pattern_7 1.69189e-05 metacluster_0/pattern_16 0.00751272
Klf5	Pattern Name Modisco Significance metacluster_0/pattern_0 0.0206752 metacluster_0/pattern_7 0.000268464
Zfp740	Pattern Name Modisco Significance metacluster_0/pattern_0 0.041231800000000006 metacluster_0/pattern_13 0.019630599999999998
Fli1	Pattern Name Modisco Significance metacluster_0/pattern_1 0.00461996
Gabpa	Pattern Name Modisco Significance metacluster_0/pattern_1 0.00277298
Elk4	Pattern Name Modisco Significance metacluster_0/pattern_1 0.00277298
Elk1	Pattern Name Modisco Significance metacluster_0/pattern_1 0.00236129
Ets1	Pattern Name Modisco Significance metacluster_0/pattern_1 0.00435886
Erg	Pattern Name Modisco Significance metacluster_0/pattern_1 0.00461996
Elf1	Pattern Name Modisco Significance metacluster_0/pattern_1 0.000100735
Fev	Pattern Name Modisco Significance metacluster_0/pattern_1 0.00039246800000000004
Etv5	Pattern Name Modisco Significance metacluster_0/pattern_1 0.00102271
Elk3	Pattern Name Modisco Significance metacluster_0/pattern_1 0.00183162
Etv2	Pattern Name Modisco Significance metacluster_0/pattern_1 0.00236129
Etv4	Pattern Name Modisco Significance metacluster_0/pattern_1 0.00785202
Etv1	Pattern Name Modisco Significance metacluster_0/pattern_1 0.00356799
Etv6	Pattern Name Modisco Significance metacluster_0/pattern_1 0.038316300000000005
Ehf	Pattern Name Modisco Significance metacluster_0/pattern_1 0.0076932
Elf2	Pattern Name Modisco Significance metacluster_0/pattern_1 0.030483499999999997
Etv3	Pattern Name Modisco Significance metacluster_0/pattern_1 0.00580859
XP_911724.4	Pattern Name Modisco Significance metacluster_0/pattern_1 0.00618909
Elf5	Pattern Name Modisco Significance metacluster_0/pattern_1 0.0482124
Elf4	Pattern Name Modisco Significance metacluster_0/pattern_1 0.0234271
Elf3	Pattern Name Modisco Significance metacluster_0/pattern_1 0.028663799999999996
Spi1	Pattern Name Modisco Significance metacluster_0/pattern_1 0.0483836
Spdef	Pattern Name Modisco Significance metacluster_0/pattern_1 0.030483499999999997
Nfyb	Pattern Name Modisco Significance metacluster_0/pattern_2 5.75802e-15
Nfyc	Pattern Name Modisco Significance metacluster_0/pattern_2 8.91871e-12
Nfya	Pattern Name Modisco Significance metacluster_0/pattern_2 8.91871e-12
Foxi1	Pattern Name Modisco Significance metacluster_0/pattern_2 3.82391e-07
Pbx3	Pattern Name Modisco Significance metacluster_0/pattern_2 4.686309999999999e-06
Creb1	Pattern Name Modisco Significance metacluster_0/pattern_3 0.000813455 metacluster_0/pattern_14 0.0382013 metacluster_0/pattern_15 0.05842869999999999
Jdp2	Pattern Name Modisco Significance metacluster_0/pattern_3 0.00651026 metacluster_0/pattern_14 0.04231819999999999
Creb5	Pattern Name Modisco Significance metacluster_0/pattern_3 0.000923905
Atf1	Pattern Name Modisco Significance metacluster_0/pattern_3 0.00360924 metacluster_0/pattern_14 0.053951599999999995 metacluster_0/pattern_15 0.0232129
Atf7	Pattern Name Modisco Significance metacluster_0/pattern_3 0.00301037 metacluster_0/pattern_14 0.021502700000000003 metacluster_0/pattern_15 0.031749599999999996
Atf2	Pattern Name Modisco Significance metacluster_0/pattern_3 0.00998638 metacluster_0/pattern_14 0.0342869 metacluster_0/pattern_15 0.049726
Crem	Pattern Name Modisco Significance metacluster_0/pattern_3 0.015377100000000001 metacluster_0/pattern_15 0.0510491
Jun	Pattern Name Modisco Significance metacluster_0/pattern_3 0.0488065
Atf3	Pattern Name Modisco Significance metacluster_0/pattern_3 0.0325144
Xbp1	Pattern Name Modisco Significance metacluster_0/pattern_3 0.0325144
Fosl1	Pattern Name Modisco Significance metacluster_0/pattern_3 0.033948400000000004
Mafb	Pattern Name Modisco Significance metacluster_0/pattern_3 0.0410351
Nfil3	Pattern Name Modisco Significance metacluster_0/pattern_3 0.0410351
Gmeb2	Pattern Name Modisco Significance metacluster_0/pattern_3 0.0410351
Fosl2	Pattern Name Modisco Significance metacluster_0/pattern_3 0.0410351
Jund	Pattern Name Modisco Significance metacluster_0/pattern_3 0.0456075
Tef	Pattern Name Modisco Significance metacluster_0/pattern_3 0.0488065
Gmeb1	Pattern Name Modisco Significance metacluster_0/pattern_3 0.056139499999999995
Nrf1	Pattern Name Modisco Significance metacluster_0/pattern_4 6.039009999999999e-06
Rfx1	Pattern Name Modisco Significance metacluster_0/pattern_5 0.00468754 metacluster_0/pattern_6 0.0354883 metacluster_0/pattern_7 0.03468 metacluster_0/pattern_8 0.0547828 metacluster_0/pattern_9 2.5254699999999997e-08 metacluster_0/pattern_14 0.010878200000000001 metacluster_0/pattern_16 0.027570599999999997
Usf2	Pattern Name Modisco Significance metacluster_0/pattern_5 0.012318 metacluster_0/pattern_6 0.00218333 metacluster_0/pattern_7 0.0005354719999999999 metacluster_0/pattern_11 0.00557598 metacluster_0/pattern_14 0.0121125 metacluster_0/pattern_16 0.0191604
Mxi1	Pattern Name Modisco Significance metacluster_0/pattern_5 0.014026400000000001 metacluster_0/pattern_6 0.016277899999999998 metacluster_0/pattern_7 0.0053488 metacluster_0/pattern_8 0.0498281 metacluster_0/pattern_14 0.0047717 metacluster_0/pattern_16 0.0334594
Ctcfl	Pattern Name Modisco Significance metacluster_0/pattern_5 0.014026400000000001 metacluster_0/pattern_6 0.014566399999999998 metacluster_0/pattern_7 0.0191726 metacluster_0/pattern_10 6.16616e-12 metacluster_0/pattern_14 0.04231819999999999 metacluster_0/pattern_16 0.0498788
Ctcf	Pattern Name Modisco Significance metacluster_0/pattern_5 0.033891199999999996 metacluster_0/pattern_6 0.030380900000000002 metacluster_0/pattern_7 0.0216229 metacluster_0/pattern_10 1.4921799999999998e-07 metacluster_0/pattern_16 0.0564073
Klf15	Pattern Name Modisco Significance metacluster_0/pattern_5 0.0427255 metacluster_0/pattern_7 0.000268464 metacluster_0/pattern_16 0.00239282
Wt1	Pattern Name Modisco Significance metacluster_0/pattern_5 0.0460777 metacluster_0/pattern_7 6.511140000000001e-05 metacluster_0/pattern_14 0.0382013 metacluster_0/pattern_16 0.00022232
Zbtb14	Pattern Name Modisco Significance metacluster_0/pattern_6 0.030380900000000002
Tfap2b	Pattern Name Modisco Significance metacluster_0/pattern_6 0.0490168
Maz	Pattern Name Modisco Significance metacluster_0/pattern_7 0.000268464 metacluster_0/pattern_14 0.053951599999999995 metacluster_0/pattern_16 0.000742798
Egr3	Pattern Name Modisco Significance metacluster_0/pattern_7 0.011826799999999998
Nr1h4	Pattern Name Modisco Significance metacluster_0/pattern_7 0.0119973 metacluster_0/pattern_14 0.024172700000000002
Taf1	Pattern Name Modisco Significance metacluster_0/pattern_8 2.39041e-06
Yy1	Pattern Name Modisco Significance metacluster_0/pattern_8 7.96087e-06
Zfp42	Pattern Name Modisco Significance metacluster_0/pattern_8 0.022816299999999998
Rfx3	Pattern Name Modisco Significance metacluster_0/pattern_9 0.00304375 metacluster_0/pattern_13 0.019630599999999998
Rfx2	Pattern Name Modisco Significance metacluster_0/pattern_9 7.470210000000001e-08 metacluster_0/pattern_13 0.0400804
Rfx4	Pattern Name Modisco Significance metacluster_0/pattern_9 0.000282188
Rfx7	Pattern Name Modisco Significance metacluster_0/pattern_9 0.00232166 metacluster_0/pattern_13 0.019630599999999998
Rfx6	Pattern Name Modisco Significance metacluster_0/pattern_9 0.00156261 metacluster_0/pattern_13 0.000577106
Zbtb33	Pattern Name Modisco Significance metacluster_0/pattern_11 0.000843899
Thap11	Pattern Name Modisco Significance metacluster_0/pattern_12 1.51138e-22
Zfp143	Pattern Name Modisco Significance metacluster_0/pattern_12 8.468599999999999e-20
Tbx2	Pattern Name Modisco Significance metacluster_0/pattern_12 1.02297e-12
Usf1	Pattern Name Modisco Significance metacluster_0/pattern_14 0.037256300000000006
Tfeb	Pattern Name Modisco Significance metacluster_0/pattern_14 0.0007156269999999999
Tfe3	Pattern Name Modisco Significance metacluster_0/pattern_14 0.00200581
Arntl	Pattern Name Modisco Significance metacluster_0/pattern_14 0.008718700000000001
Tfec	Pattern Name Modisco Significance metacluster_0/pattern_14 0.00211126
Mitf	Pattern Name Modisco Significance metacluster_0/pattern_14 0.00106014
Bhlhe40	Pattern Name Modisco Significance metacluster_0/pattern_14 0.0180534
Clock	Pattern Name Modisco Significance metacluster_0/pattern_14 0.0255891
Srebf1	Pattern Name Modisco Significance metacluster_0/pattern_14 0.010878200000000001
Arnt	Pattern Name Modisco Significance metacluster_0/pattern_14 0.041755099999999996
Mlx	Pattern Name Modisco Significance metacluster_0/pattern_14 0.0121125
Npas2	Pattern Name Modisco Significance metacluster_0/pattern_14 0.00347749
Srebf2	Pattern Name Modisco Significance metacluster_0/pattern_14 0.00748804
Tcfl5	Pattern Name Modisco Significance metacluster_0/pattern_14 0.00961078
Mycn	Pattern Name Modisco Significance metacluster_0/pattern_14 0.0178365
Creb3l2	Pattern Name Modisco Significance metacluster_0/pattern_14 0.0382013
Max	Pattern Name Modisco Significance metacluster_0/pattern_14 0.0270385
Myc	Pattern Name Modisco Significance metacluster_0/pattern_14 0.0382013
Bhlhe41	Pattern Name Modisco Significance metacluster_0/pattern_14 0.0385144
Hlf	Pattern Name Modisco Significance metacluster_0/pattern_14 0.0392671
Rxrg	Pattern Name Modisco Significance metacluster_0/pattern_14 0.0538275
Dbp	Pattern Name Modisco Significance metacluster_0/pattern_15 0.0574869
Rxrb	Pattern Name Modisco Significance metacluster_0/pattern_15 0.0574869
Mybl2	Pattern Name Modisco Significance metacluster_0/pattern_16 0.000742798
Mybl1	Pattern Name Modisco Significance metacluster_0/pattern_16 0.0109554
Klf9	Pattern Name Modisco Significance metacluster_0/pattern_16 0.013706999999999999
Irf6	Pattern Name Modisco Significance metacluster_0/pattern_16 0.0334594
E2f3	Pattern Name Modisco Significance metacluster_0/pattern_16 0.0444462
E2f6	Pattern Name Modisco Significance metacluster_0/pattern_16 0.047057

display_paiwise_pattern_comparison(data_name, modisco_root, homer_root)

Number of CISBP TFs obtained by TF-MoDISco and Homer

Shared TFs between TF-MoDISco and Homer: #71

TF Name	Modisco	Homer
Klf3	Pattern Name Modisco Significance metacluster_0/pattern_0 2.9825799999999998e-05 metacluster_0/pattern_5 0.0008585060000000001 metacluster_0/pattern_6 0.0116458 metacluster_0/pattern_7 9.37892e-09 metacluster_0/pattern_14 0.00531886 metacluster_0/pattern_16 0.013706999999999999	Pattern Name Homer Significance motif1.motif 0.00015296
Sp3	Pattern Name Modisco Significance metacluster_0/pattern_0 1.0341600000000001e-05 metacluster_0/pattern_5 4.5405e-05 metacluster_0/pattern_6 0.00042464900000000003 metacluster_0/pattern_7 6.7694e-10 metacluster_0/pattern_8 0.022816299999999998 metacluster_0/pattern_11 0.00557598 metacluster_0/pattern_14 0.00041059 metacluster_0/pattern_16 9.85125e-05	Pattern Name Homer Significance motif1.motif 0.000155095
Gabpa	Pattern Name Modisco Significance metacluster_0/pattern_1 0.00277298	Pattern Name Homer Significance motif3.motif 0.000992822
Ets1	Pattern Name Modisco Significance metacluster_0/pattern_1 0.00435886	Pattern Name Homer Significance motif3.motif 0.00225873
Egr2	Pattern Name Modisco Significance metacluster_0/pattern_0 0.046299900000000005 metacluster_0/pattern_7 0.0119973	Pattern Name Homer Significance motif1.motif 0.0308367
Klf4	Pattern Name Modisco Significance metacluster_0/pattern_0 0.0200768 metacluster_0/pattern_7 0.00091201	Pattern Name Homer Significance motif1.motif 0.0228017
Egr1	Pattern Name Modisco Significance metacluster_0/pattern_0 0.00278035 metacluster_0/pattern_5 0.0342205 metacluster_0/pattern_7 0.00356753	Pattern Name Homer Significance motif1.motif 0.0118484
Elf1	Pattern Name Modisco Significance metacluster_0/pattern_1 0.000100735	Pattern Name Homer Significance motif3.motif 0.00106079
Etv5	Pattern Name Modisco Significance metacluster_0/pattern_1 0.00102271	Pattern Name Homer Significance motif3.motif 0.000487586
Klf8	Pattern Name Modisco Significance metacluster_0/pattern_0 0.00172139 metacluster_0/pattern_7 0.00057782	Pattern Name Homer Significance motif1.motif 0.000303205
Jdp2	Pattern Name Modisco Significance metacluster_0/pattern_3 0.00651026 metacluster_0/pattern_14 0.04231819999999999	Pattern Name Homer Significance motif5.motif 0.036303800000000004
Klf6	Pattern Name Modisco Significance metacluster_0/pattern_0 0.0008428410000000001 metacluster_0/pattern_5 0.014026400000000001 metacluster_0/pattern_7 4.47115e-06 metacluster_0/pattern_16 0.0437486	Pattern Name Homer Significance motif1.motif 0.0008697889999999999
Klf1	Pattern Name Modisco Significance metacluster_0/pattern_0 0.0206752 metacluster_0/pattern_5 0.033891199999999996 metacluster_0/pattern_7 0.0191726	Pattern Name Homer Significance motif1.motif 0.015149600000000001
Fli1	Pattern Name Modisco Significance metacluster_0/pattern_1 0.00461996	Pattern Name Homer Significance motif3.motif 0.00185978
Ehf	Pattern Name Modisco Significance metacluster_0/pattern_1 0.0076932	Pattern Name Homer Significance motif3.motif 0.0462152
Crem	Pattern Name Modisco Significance metacluster_0/pattern_3 0.015377100000000001 metacluster_0/pattern_15 0.0510491	Pattern Name Homer Significance motif5.motif 0.021784599999999998
Arntl	Pattern Name Modisco Significance metacluster_0/pattern_14 0.008718700000000001	Pattern Name Homer Significance motif5.motif 0.0449509
Creb5	Pattern Name Modisco Significance metacluster_0/pattern_3 0.000923905	Pattern Name Homer Significance motif5.motif 0.017525299999999997
Atf2	Pattern Name Modisco Significance metacluster_0/pattern_3 0.00998638 metacluster_0/pattern_14 0.0342869 metacluster_0/pattern_15 0.049726	Pattern Name Homer Significance motif5.motif 0.036303800000000004
Creb1	Pattern Name Modisco Significance metacluster_0/pattern_3 0.000813455 metacluster_0/pattern_14 0.0382013 metacluster_0/pattern_15 0.05842869999999999	Pattern Name Homer Significance motif5.motif 0.021784599999999998
Klf7	Pattern Name Modisco Significance metacluster_0/pattern_0 0.00117489 metacluster_0/pattern_7 0.000268464	Pattern Name Homer Significance motif1.motif 0.000155095
Elf2	Pattern Name Modisco Significance metacluster_0/pattern_1 0.030483499999999997	Pattern Name Homer Significance motif3.motif 0.0449963
Tbx2	Pattern Name Modisco Significance metacluster_0/pattern_12 1.02297e-12	Pattern Name Homer Significance motif4.motif 3.41954e-05
Tcfl5	Pattern Name Modisco Significance metacluster_0/pattern_14 0.00961078	Pattern Name Homer Significance motif8.motif 0.0252135
Erg	Pattern Name Modisco Significance metacluster_0/pattern_1 0.00461996	Pattern Name Homer Significance motif3.motif 0.0019099
Nfya	Pattern Name Modisco Significance metacluster_0/pattern_2 8.91871e-12	Pattern Name Homer Significance motif2.motif 4.5757099999999996e-08
Fev	Pattern Name Modisco Significance metacluster_0/pattern_1 0.00039246800000000004	Pattern Name Homer Significance motif3.motif 0.00254355
Elf5	Pattern Name Modisco Significance metacluster_0/pattern_1 0.0482124	Pattern Name Homer Significance motif3.motif 0.053600199999999994
Foxi1	Pattern Name Modisco Significance metacluster_0/pattern_2 3.82391e-07	Pattern Name Homer Significance motif2.motif 5.68523e-05
Atf7	Pattern Name Modisco Significance metacluster_0/pattern_3 0.00301037 metacluster_0/pattern_14 0.021502700000000003 metacluster_0/pattern_15 0.031749599999999996	Pattern Name Homer Significance motif5.motif 0.036303800000000004
Tfe3	Pattern Name Modisco Significance metacluster_0/pattern_14 0.00200581	Pattern Name Homer Significance motif5.motif 0.0447578
Pbx3	Pattern Name Modisco Significance metacluster_0/pattern_2 4.686309999999999e-06	Pattern Name Homer Significance motif2.motif 0.00023648400000000002
Etv4	Pattern Name Modisco Significance metacluster_0/pattern_1 0.00785202	Pattern Name Homer Significance motif3.motif 0.0111279
XP_911724.4	Pattern Name Modisco Significance metacluster_0/pattern_1 0.00618909	Pattern Name Homer Significance motif3.motif 0.00254355
Elf3	Pattern Name Modisco Significance metacluster_0/pattern_1 0.028663799999999996	Pattern Name Homer Significance motif3.motif 0.05492090000000001
Sp4	Pattern Name Modisco Significance metacluster_0/pattern_0 0.00242041 metacluster_0/pattern_7 0.00922237 metacluster_0/pattern_14 0.053264599999999995	Pattern Name Homer Significance motif1.motif 0.0162483
Rfx3	Pattern Name Modisco Significance metacluster_0/pattern_9 0.00304375 metacluster_0/pattern_13 0.019630599999999998	Pattern Name Homer Significance motif9.motif 0.0249243
E2f4	Pattern Name Modisco Significance metacluster_0/pattern_0 0.000423285	Pattern Name Homer Significance motif1.motif 0.000303205
Etv3	Pattern Name Modisco Significance metacluster_0/pattern_1 0.00580859	Pattern Name Homer Significance motif3.motif 0.00261074
Yy1	Pattern Name Modisco Significance metacluster_0/pattern_8 7.96087e-06	Pattern Name Homer Significance motif15.motif 0.016778599999999998
Zfp143	Pattern Name Modisco Significance metacluster_0/pattern_12 8.468599999999999e-20	Pattern Name Homer Significance motif4.motif 9.19496e-07
Rfx2	Pattern Name Modisco Significance metacluster_0/pattern_9 7.470210000000001e-08 metacluster_0/pattern_13 0.0400804	Pattern Name Homer Significance motif9.motif 0.0584289
Sp1	Pattern Name Modisco Significance metacluster_0/pattern_0 0.0008380169999999999 metacluster_0/pattern_5 2.1735199999999998e-05 metacluster_0/pattern_6 0.00042464900000000003 metacluster_0/pattern_7 0.000731289 metacluster_0/pattern_11 0.0247607 metacluster_0/pattern_14 0.000300893 metacluster_0/pattern_16 2.095e-05	Pattern Name Homer Significance motif1.motif 0.0056093
Elk4	Pattern Name Modisco Significance metacluster_0/pattern_1 0.00277298	Pattern Name Homer Significance motif3.motif 0.0015566
Bhlhe40	Pattern Name Modisco Significance metacluster_0/pattern_14 0.0180534	Pattern Name Homer Significance motif5.motif 0.0519111
Etv6	Pattern Name Modisco Significance metacluster_0/pattern_1 0.038316300000000005	Pattern Name Homer Significance motif3.motif 0.025970299999999998
Xbp1	Pattern Name Modisco Significance metacluster_0/pattern_3 0.0325144	Pattern Name Homer Significance motif5.motif 0.033003199999999996
Atf1	Pattern Name Modisco Significance metacluster_0/pattern_3 0.00360924 metacluster_0/pattern_14 0.053951599999999995 metacluster_0/pattern_15 0.0232129	Pattern Name Homer Significance motif5.motif 0.036303800000000004
Klf5	Pattern Name Modisco Significance metacluster_0/pattern_0 0.0206752 metacluster_0/pattern_7 0.000268464	Pattern Name Homer Significance motif1.motif 0.00906286
Sp2	Pattern Name Modisco Significance metacluster_0/pattern_0 2.19798e-06 metacluster_0/pattern_5 4.5904e-06 metacluster_0/pattern_6 7.95086e-05 metacluster_0/pattern_7 3.80524e-11 metacluster_0/pattern_8 0.0310108 metacluster_0/pattern_11 0.00557598 metacluster_0/pattern_14 4.4578e-05 metacluster_0/pattern_16 1.24768e-05	Pattern Name Homer Significance motif1.motif 0.00015296
E2f1	Pattern Name Modisco Significance metacluster_0/pattern_0 0.00805408	Pattern Name Homer Significance motif1.motif 0.0438529
Spi1	Pattern Name Modisco Significance metacluster_0/pattern_1 0.0483836	Pattern Name Homer Significance motif3.motif 0.0111279
Zbtb33	Pattern Name Modisco Significance metacluster_0/pattern_11 0.000843899	Pattern Name Homer Significance motif10.motif 0.000284423
Spdef	Pattern Name Modisco Significance metacluster_0/pattern_1 0.030483499999999997	Pattern Name Homer Significance motif3.motif 0.016884
Clock	Pattern Name Modisco Significance metacluster_0/pattern_14 0.0255891	Pattern Name Homer Significance motif5.motif 0.0428099
Rfx6	Pattern Name Modisco Significance metacluster_0/pattern_9 0.00156261 metacluster_0/pattern_13 0.000577106	Pattern Name Homer Significance motif9.motif 0.0110671
Nfyc	Pattern Name Modisco Significance metacluster_0/pattern_2 8.91871e-12	Pattern Name Homer Significance motif2.motif 3.23852e-07
Elk1	Pattern Name Modisco Significance metacluster_0/pattern_1 0.00236129	Pattern Name Homer Significance motif3.motif 0.00086262
Elf4	Pattern Name Modisco Significance metacluster_0/pattern_1 0.0234271	Pattern Name Homer Significance motif3.motif 0.0028565
Tfeb	Pattern Name Modisco Significance metacluster_0/pattern_14 0.0007156269999999999	Pattern Name Homer Significance motif5.motif 0.036303800000000004
Nrf1	Pattern Name Modisco Significance metacluster_0/pattern_4 6.039009999999999e-06	Pattern Name Homer Significance motif6.motif 7.314400000000001e-06
Rfx4	Pattern Name Modisco Significance metacluster_0/pattern_9 0.000282188	Pattern Name Homer Significance motif9.motif 0.00011564299999999999
Thap11	Pattern Name Modisco Significance metacluster_0/pattern_12 1.51138e-22	Pattern Name Homer Significance motif4.motif 9.19496e-07
Rfx1	Pattern Name Modisco Significance metacluster_0/pattern_5 0.00468754 metacluster_0/pattern_6 0.0354883 metacluster_0/pattern_7 0.03468 metacluster_0/pattern_8 0.0547828 metacluster_0/pattern_9 2.5254699999999997e-08 metacluster_0/pattern_14 0.010878200000000001 metacluster_0/pattern_16 0.027570599999999997	Pattern Name Homer Significance motif9.motif 1.0791600000000001e-07
Elk3	Pattern Name Modisco Significance metacluster_0/pattern_1 0.00183162	Pattern Name Homer Significance motif3.motif 0.000992822
Etv1	Pattern Name Modisco Significance metacluster_0/pattern_1 0.00356799	Pattern Name Homer Significance motif3.motif 0.00115739
Nfyb	Pattern Name Modisco Significance metacluster_0/pattern_2 5.75802e-15	Pattern Name Homer Significance motif2.motif 8.48518e-09
Klf12	Pattern Name Modisco Significance metacluster_0/pattern_0 0.0200768 metacluster_0/pattern_7 0.000523494	Pattern Name Homer Significance motif1.motif 0.00601437
Rfx7	Pattern Name Modisco Significance metacluster_0/pattern_9 0.00232166 metacluster_0/pattern_13 0.019630599999999998	Pattern Name Homer Significance motif9.motif 0.00939154
Etv2	Pattern Name Modisco Significance metacluster_0/pattern_1 0.00236129	Pattern Name Homer Significance motif3.motif 0.013025700000000001
Rxrb	Pattern Name Modisco Significance metacluster_0/pattern_15 0.0574869	Pattern Name Homer Significance motif5.motif 0.0449509

Unique TF-MoDISco TFs: #50

TF Name	Modisco	Homer
Gmeb2	Pattern Name Modisco Significance metacluster_0/pattern_3 0.0410351	Absent
Creb3l2	Pattern Name Modisco Significance metacluster_0/pattern_14 0.0382013	Absent
Mybl2	Pattern Name Modisco Significance metacluster_0/pattern_16 0.000742798	Absent
Wt1	Pattern Name Modisco Significance metacluster_0/pattern_5 0.0460777 metacluster_0/pattern_7 6.511140000000001e-05 metacluster_0/pattern_14 0.0382013 metacluster_0/pattern_16 0.00022232	Absent
Bhlhe41	Pattern Name Modisco Significance metacluster_0/pattern_14 0.0385144	Absent
Usf2	Pattern Name Modisco Significance metacluster_0/pattern_5 0.012318 metacluster_0/pattern_6 0.00218333 metacluster_0/pattern_7 0.0005354719999999999 metacluster_0/pattern_11 0.00557598 metacluster_0/pattern_14 0.0121125 metacluster_0/pattern_16 0.0191604	Absent
Ctcfl	Pattern Name Modisco Significance metacluster_0/pattern_5 0.014026400000000001 metacluster_0/pattern_6 0.014566399999999998 metacluster_0/pattern_7 0.0191726 metacluster_0/pattern_10 6.16616e-12 metacluster_0/pattern_14 0.04231819999999999 metacluster_0/pattern_16 0.0498788	Absent
Zbtb14	Pattern Name Modisco Significance metacluster_0/pattern_6 0.030380900000000002	Absent
Tfap2b	Pattern Name Modisco Significance metacluster_0/pattern_6 0.0490168	Absent
Srebf2	Pattern Name Modisco Significance metacluster_0/pattern_14 0.00748804	Absent
Dbp	Pattern Name Modisco Significance metacluster_0/pattern_15 0.0574869	Absent
Mycn	Pattern Name Modisco Significance metacluster_0/pattern_14 0.0178365	Absent
Mafb	Pattern Name Modisco Significance metacluster_0/pattern_3 0.0410351	Absent
Klf15	Pattern Name Modisco Significance metacluster_0/pattern_5 0.0427255 metacluster_0/pattern_7 0.000268464 metacluster_0/pattern_16 0.00239282	Absent
Myc	Pattern Name Modisco Significance metacluster_0/pattern_14 0.0382013	Absent
Zfx	Pattern Name Modisco Significance metacluster_0/pattern_0 0.0206752 metacluster_0/pattern_5 0.00344136 metacluster_0/pattern_6 0.00218333 metacluster_0/pattern_7 0.000731289 metacluster_0/pattern_11 0.00474658 metacluster_0/pattern_14 0.026680400000000003 metacluster_0/pattern_16 0.000904643	Absent
Mybl1	Pattern Name Modisco Significance metacluster_0/pattern_16 0.0109554	Absent
Zfp740	Pattern Name Modisco Significance metacluster_0/pattern_0 0.041231800000000006 metacluster_0/pattern_13 0.019630599999999998	Absent
Nfil3	Pattern Name Modisco Significance metacluster_0/pattern_3 0.0410351	Absent
Taf1	Pattern Name Modisco Significance metacluster_0/pattern_8 2.39041e-06	Absent
Usf1	Pattern Name Modisco Significance metacluster_0/pattern_14 0.037256300000000006	Absent
Sp5	Pattern Name Modisco Significance metacluster_0/pattern_0 0.0206752 metacluster_0/pattern_7 1.69189e-05 metacluster_0/pattern_16 0.00751272	Absent
Jund	Pattern Name Modisco Significance metacluster_0/pattern_3 0.0456075	Absent
Tef	Pattern Name Modisco Significance metacluster_0/pattern_3 0.0488065	Absent
Jun	Pattern Name Modisco Significance metacluster_0/pattern_3 0.0488065	Absent
Fosl1	Pattern Name Modisco Significance metacluster_0/pattern_3 0.033948400000000004	Absent
Srebf1	Pattern Name Modisco Significance metacluster_0/pattern_14 0.010878200000000001	Absent
Ctcf	Pattern Name Modisco Significance metacluster_0/pattern_5 0.033891199999999996 metacluster_0/pattern_6 0.030380900000000002 metacluster_0/pattern_7 0.0216229 metacluster_0/pattern_10 1.4921799999999998e-07 metacluster_0/pattern_16 0.0564073	Absent
Nr1h4	Pattern Name Modisco Significance metacluster_0/pattern_7 0.0119973 metacluster_0/pattern_14 0.024172700000000002	Absent
Fosl2	Pattern Name Modisco Significance metacluster_0/pattern_3 0.0410351	Absent
Atf3	Pattern Name Modisco Significance metacluster_0/pattern_3 0.0325144	Absent
Hlf	Pattern Name Modisco Significance metacluster_0/pattern_14 0.0392671	Absent
E2f6	Pattern Name Modisco Significance metacluster_0/pattern_16 0.047057	Absent
Maz	Pattern Name Modisco Significance metacluster_0/pattern_7 0.000268464 metacluster_0/pattern_14 0.053951599999999995 metacluster_0/pattern_16 0.000742798	Absent
Egr3	Pattern Name Modisco Significance metacluster_0/pattern_7 0.011826799999999998	Absent
Mlx	Pattern Name Modisco Significance metacluster_0/pattern_14 0.0121125	Absent
Tfec	Pattern Name Modisco Significance metacluster_0/pattern_14 0.00211126	Absent
Zfp281	Pattern Name Modisco Significance metacluster_0/pattern_0 0.0206752 metacluster_0/pattern_7 0.05466569999999999 metacluster_0/pattern_16 0.0564073	Absent
Zfp42	Pattern Name Modisco Significance metacluster_0/pattern_8 0.022816299999999998	Absent
Irf6	Pattern Name Modisco Significance metacluster_0/pattern_16 0.0334594	Absent
Npas2	Pattern Name Modisco Significance metacluster_0/pattern_14 0.00347749	Absent
Arnt	Pattern Name Modisco Significance metacluster_0/pattern_14 0.041755099999999996	Absent
Mitf	Pattern Name Modisco Significance metacluster_0/pattern_14 0.00106014	Absent
Mxi1	Pattern Name Modisco Significance metacluster_0/pattern_5 0.014026400000000001 metacluster_0/pattern_6 0.016277899999999998 metacluster_0/pattern_7 0.0053488 metacluster_0/pattern_8 0.0498281 metacluster_0/pattern_14 0.0047717 metacluster_0/pattern_16 0.0334594	Absent
Zbtb17	Pattern Name Modisco Significance metacluster_0/pattern_0 0.00386044 metacluster_0/pattern_5 0.00339711 metacluster_0/pattern_6 0.029433099999999997 metacluster_0/pattern_7 0.000268464 metacluster_0/pattern_14 0.0382013 metacluster_0/pattern_16 0.00223051	Absent
Max	Pattern Name Modisco Significance metacluster_0/pattern_14 0.0270385	Absent
Gmeb1	Pattern Name Modisco Significance metacluster_0/pattern_3 0.056139499999999995	Absent
Klf9	Pattern Name Modisco Significance metacluster_0/pattern_16 0.013706999999999999	Absent
Rxrg	Pattern Name Modisco Significance metacluster_0/pattern_14 0.0538275	Absent
E2f3	Pattern Name Modisco Significance metacluster_0/pattern_16 0.0444462	Absent

Unique Homer TFs: #5

TF Name	Modisco	Homer
Spic	Absent	Pattern Name Homer Significance motif3.motif 0.0526008
Hes7	Absent	Pattern Name Homer Significance motif8.motif 0.0252135
Zbtb1	Absent	Pattern Name Homer Significance motif1.motif 0.0308367
Hes1	Absent	Pattern Name Homer Significance motif8.motif 0.036037599999999996
E2f7	Absent	Pattern Name Homer Significance motif1.motif 0.0438529