# Parameters
data_name = "Erythroblast;A;CL"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
tomtom_report_root = "http://mitra.stanford.edu/kundaje/msharmin/report/tomtom_outs/cells"
task_dir = "task_45-naivegw"
perf_file = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/fineFactorized/task_45-naivegw/NaiveauPRC.txt"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
reportfile = "/mnt/lab_data/kundaje/msharmin/annotations/filtering samples_MS2.xlsx"
sheetname = "filter23"

from matlas.reports import display_metadata

load data from labcluster

Using TensorFlow backend.
2019-08-30 18:50:19,215 [WARNING] git-lfs not installed

display_metadata(data_name, perf_file, reportfile, sheetname)

Sample Information

MetaData Name	Description
Cell type	Erythroblasts
Cell Group	Other Immune Cells
Experiment Name	ATAC
Experiment Group	Casellas Lab

Pipeline Output

replicate	Naïve overlap peaks	IDR peaks	TSS enrichment (< 8 is very poor <10 is low)	Final number of unique mapping, dup-filtered, chrM filtered reads	Number of reads in called peak regions	Fraction of reads in called peak regions	Number of reads in promoter regions	Fraction of reads in promoter regions	Number of reads in enhancer regions	Fraction of reads in enhancer regions
rep1	65240	52690	10.2005	43333228	7006011	0.1617	6670615	0.154	14403741	0.3325

Modelling Metadata

Metric	Value
auPRC	0.6192
Calibrated Recall at 50% FDR	0.185
Number of Positive Examples in Test Data	55205
Number of Negative Examples in Test Data	8015646
Imbalance Ratio in Test Data	0.0068
Test Chromosomes	chr2, chr3, chr19

from matlas.reports import display_paiwise_pattern_comparison
from matlas.reports import display_denovo_patterns

display_denovo_patterns(data_name, modisco_root=modisco_root)

TF-MoDISco is using the TensorFlow backend.

The following two links show list of Denovo Patterns and corresponding Motifs discovered by TF-MoDISco

Click here for Denovo Patterns by TF-MoDISco: #21

Pattern Name	TF Name(s)	Modisco
metacluster_1/pattern_0 # seqlets: 5172 SequenceContrib ScoresHyp_Contrib Scores	Ctcf, Ctcfl
metacluster_1/pattern_1 # seqlets: 2544 SequenceContrib ScoresHyp_Contrib Scores	Sp4, Sp2, Klf3, Sp3, Sp1, E2f4, Klf6, Klf7, Klf4, Klf1, Egr1, Klf8, Klf12, Egr2, Zbtb17, E2f1, Sp5, Klf5, Zfp281, Zfx, Zfp740, Egr3
metacluster_1/pattern_2 # seqlets: 2075 SequenceContrib ScoresHyp_Contrib Scores	Gabpa, Fli1, Elk1, Elk4, Ets1, Erg, Elk3, Fev, Elf1, Etv5, Etv4, Etv1, Etv6, Elf2, Ehf, Etv3, XP_911724.4, Elf5, Etv2, Elf4, Spi1, Elf3, Spdef
metacluster_1/pattern_3 # seqlets: 2005 SequenceContrib ScoresHyp_Contrib Scores	Nrf1
metacluster_1/pattern_4 # seqlets: 1640 SequenceContrib ScoresHyp_Contrib Scores	Nfyb, Foxi1, Nfyc, Nfya, Pbx3
metacluster_1/pattern_5 # seqlets: 1191 SequenceContrib ScoresHyp_Contrib Scores	Yy1, Taf1, Rfx1, Zfp42, Wt1, Mxi1, Usf2
metacluster_1/pattern_6 # seqlets: 1031 SequenceContrib ScoresHyp_Contrib Scores	Zbtb33
metacluster_1/pattern_7 # seqlets: 898 SequenceContrib ScoresHyp_Contrib Scores	Creb1, Jdp2, Atf7, Atf2, Atf1, Atf3, Fosl2, Creb5, Crem, Fosl1, Jun, Nfil3, Tef, Hlf, Srebf2, Creb3l2, Cebpb
metacluster_1/pattern_8 # seqlets: 889 SequenceContrib ScoresHyp_Contrib Scores	Zfp143, Thap11, Tbx2
metacluster_1/pattern_9 # seqlets: 816 SequenceContrib ScoresHyp_Contrib Scores	Gata1, Tal1, Gata4, Gata5, Gata6, Gata2, Gata3
metacluster_1/pattern_10 # seqlets: 782 SequenceContrib ScoresHyp_Contrib Scores	Nfe2, Bach2, Nfe2l2, Bach1, Mafa, Mafk, Mafb, Mafg, Maff, Maf, Fosb, Junb, Batf, Jund, Fos
metacluster_1/pattern_11 # seqlets: 647 SequenceContrib ScoresHyp_Contrib Scores
metacluster_1/pattern_12 # seqlets: 571 SequenceContrib ScoresHyp_Contrib Scores	Usf1, Arntl, Tfeb, Tfec, Tfe3, Mitf, Clock, Bhlhe40, Arnt, Srebf1, Mlx, Npas2, Tcfl5, Bhlhe41, Mycn, Myc, Nr1h4, Max
metacluster_1/pattern_13 # seqlets: 570 SequenceContrib ScoresHyp_Contrib Scores
metacluster_1/pattern_14 # seqlets: 567 SequenceContrib ScoresHyp_Contrib Scores	Sall4
metacluster_1/pattern_15 # seqlets: 464 SequenceContrib ScoresHyp_Contrib Scores
metacluster_1/pattern_16 # seqlets: 398 SequenceContrib ScoresHyp_Contrib Scores	Irf1, Irf2, Irf7, Prdm1, Irf8, Stat1, Irf3, Stat2, Irf9, Irf4, Spib, Batf3
metacluster_1/pattern_17 # seqlets: 83 SequenceContrib ScoresHyp_Contrib Scores	Rfx3, Rfx2, Rfx4, Rfx7, Rfx6
metacluster_1/pattern_18 # seqlets: 70 SequenceContrib ScoresHyp_Contrib Scores	Nfia, Nfib, Nfic, Zfp322a
metacluster_1/pattern_19 # seqlets: 61 SequenceContrib ScoresHyp_Contrib Scores
metacluster_1/pattern_20 # seqlets: 46 SequenceContrib ScoresHyp_Contrib Scores

Click here for Motifs by TF-MoDISco: #143

TF Name	Pattern(s)
Ctcf	Pattern Name Modisco Significance metacluster_1/pattern_0 1.14386e-13 metacluster_1/pattern_13 3.1640700000000004e-05
Ctcfl	Pattern Name Modisco Significance metacluster_1/pattern_0 3.42107e-08 metacluster_1/pattern_7 0.051116800000000004 metacluster_1/pattern_13 0.00144704
Sp4	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00272863 metacluster_1/pattern_11 0.012018299999999999 metacluster_1/pattern_14 0.00747358 metacluster_1/pattern_15 0.0031203000000000003
Sp2	Pattern Name Modisco Significance metacluster_1/pattern_1 8.53938e-06 metacluster_1/pattern_5 8.48792e-05 metacluster_1/pattern_7 0.0157325 metacluster_1/pattern_11 0.00122027 metacluster_1/pattern_12 0.00121332 metacluster_1/pattern_14 0.0378043 metacluster_1/pattern_17 0.00378653 metacluster_1/pattern_20 0.018497
Klf3	Pattern Name Modisco Significance metacluster_1/pattern_1 8.53938e-06 metacluster_1/pattern_5 0.043813099999999994 metacluster_1/pattern_11 0.00075463 metacluster_1/pattern_12 0.00994497 metacluster_1/pattern_14 0.00418917 metacluster_1/pattern_15 0.0234577
Sp3	Pattern Name Modisco Significance metacluster_1/pattern_1 1.6421199999999998e-05 metacluster_1/pattern_5 0.000459035 metacluster_1/pattern_11 0.00122027 metacluster_1/pattern_12 0.00144906 metacluster_1/pattern_14 0.0336754 metacluster_1/pattern_17 0.00301412 metacluster_1/pattern_20 0.0524862
Sp1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.000947355 metacluster_1/pattern_5 0.00021018599999999998 metacluster_1/pattern_11 0.00626199 metacluster_1/pattern_12 0.00375717
E2f4	Pattern Name Modisco Significance metacluster_1/pattern_1 0.000313278 metacluster_1/pattern_11 0.011967799999999999
Klf6	Pattern Name Modisco Significance metacluster_1/pattern_1 0.000470355 metacluster_1/pattern_11 0.008661499999999999 metacluster_1/pattern_14 0.00683624
Klf7	Pattern Name Modisco Significance metacluster_1/pattern_1 0.000947355 metacluster_1/pattern_11 0.000544951 metacluster_1/pattern_14 0.0336754 metacluster_1/pattern_15 0.00189865
Klf4	Pattern Name Modisco Significance metacluster_1/pattern_1 0.015972999999999998 metacluster_1/pattern_11 0.00568979 metacluster_1/pattern_14 0.00642204 metacluster_1/pattern_15 0.00114863
Klf1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0575192 metacluster_1/pattern_11 0.00270669 metacluster_1/pattern_14 0.00683624 metacluster_1/pattern_15 0.000512786
Egr1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0508357 metacluster_1/pattern_11 0.0295091 metacluster_1/pattern_14 0.0566717
Klf8	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00143922 metacluster_1/pattern_11 0.00075463 metacluster_1/pattern_14 0.0154851 metacluster_1/pattern_15 0.000884193
Klf12	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0161543 metacluster_1/pattern_11 0.00075463 metacluster_1/pattern_14 0.0313279 metacluster_1/pattern_15 0.00189865
Egr2	Pattern Name Modisco Significance metacluster_1/pattern_1 0.040923900000000006 metacluster_1/pattern_5 0.0411541 metacluster_1/pattern_11 0.047843199999999995 metacluster_1/pattern_14 0.046435199999999996
Zbtb17	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0115059 metacluster_1/pattern_5 0.0137196 metacluster_1/pattern_12 0.0426498
E2f1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0118542
Sp5	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0205774
Klf5	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0221466 metacluster_1/pattern_14 0.0154851 metacluster_1/pattern_15 0.024975999999999998
Zfp281	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0367805 metacluster_1/pattern_11 0.0114751
Zfx	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0436433 metacluster_1/pattern_3 0.029632099999999998 metacluster_1/pattern_5 0.00180904 metacluster_1/pattern_7 0.0272031 metacluster_1/pattern_12 0.012994299999999999 metacluster_1/pattern_17 0.014416499999999999 metacluster_1/pattern_20 0.0217056
Zfp740	Pattern Name Modisco Significance metacluster_1/pattern_1 0.045426999999999995
Egr3	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0508357
Gabpa	Pattern Name Modisco Significance metacluster_1/pattern_2 0.00181184
Fli1	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0028921
Elk1	Pattern Name Modisco Significance metacluster_1/pattern_2 0.00140481
Elk4	Pattern Name Modisco Significance metacluster_1/pattern_2 0.00188017
Ets1	Pattern Name Modisco Significance metacluster_1/pattern_2 0.00275149
Erg	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0028921
Elk3	Pattern Name Modisco Significance metacluster_1/pattern_2 0.00107754
Fev	Pattern Name Modisco Significance metacluster_1/pattern_2 0.000399764
Elf1	Pattern Name Modisco Significance metacluster_1/pattern_2 0.000610843
Etv5	Pattern Name Modisco Significance metacluster_1/pattern_2 0.000758883
Etv4	Pattern Name Modisco Significance metacluster_1/pattern_2 0.00612704
Etv1	Pattern Name Modisco Significance metacluster_1/pattern_2 0.00196806
Etv6	Pattern Name Modisco Significance metacluster_1/pattern_2 0.020094499999999998
Elf2	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0188382
Ehf	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0205425
Etv3	Pattern Name Modisco Significance metacluster_1/pattern_2 0.00392187
XP_911724.4	Pattern Name Modisco Significance metacluster_1/pattern_2 0.00396198
Elf5	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0337892
Etv2	Pattern Name Modisco Significance metacluster_1/pattern_2 0.00612704
Elf4	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0126242
Spi1	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0188382
Elf3	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0514861
Spdef	Pattern Name Modisco Significance metacluster_1/pattern_2 0.020094499999999998
Nrf1	Pattern Name Modisco Significance metacluster_1/pattern_3 3.83928e-07
Nfyb	Pattern Name Modisco Significance metacluster_1/pattern_4 2.3095400000000002e-10
Foxi1	Pattern Name Modisco Significance metacluster_1/pattern_4 4.9049e-06
Nfyc	Pattern Name Modisco Significance metacluster_1/pattern_4 4.9049e-06
Nfya	Pattern Name Modisco Significance metacluster_1/pattern_4 4.9049e-06
Pbx3	Pattern Name Modisco Significance metacluster_1/pattern_4 0.00015463399999999998
Yy1	Pattern Name Modisco Significance metacluster_1/pattern_5 2.15581e-06
Taf1	Pattern Name Modisco Significance metacluster_1/pattern_5 2.15581e-06
Rfx1	Pattern Name Modisco Significance metacluster_1/pattern_5 0.00642362 metacluster_1/pattern_12 0.0102434 metacluster_1/pattern_17 6.8644799999999994e-09 metacluster_1/pattern_20 0.0004891359999999999
Zfp42	Pattern Name Modisco Significance metacluster_1/pattern_5 0.00746375
Wt1	Pattern Name Modisco Significance metacluster_1/pattern_5 0.0270858
Mxi1	Pattern Name Modisco Significance metacluster_1/pattern_5 0.0512065 metacluster_1/pattern_12 0.00253943
Usf2	Pattern Name Modisco Significance metacluster_1/pattern_5 0.058292 metacluster_1/pattern_7 0.000422534 metacluster_1/pattern_12 0.013596 metacluster_1/pattern_17 0.0288161
Zbtb33	Pattern Name Modisco Significance metacluster_1/pattern_6 0.0302587
Creb1	Pattern Name Modisco Significance metacluster_1/pattern_7 0.0007860660000000001 metacluster_1/pattern_12 0.0270399
Jdp2	Pattern Name Modisco Significance metacluster_1/pattern_7 0.00103931 metacluster_1/pattern_10 0.013498300000000001
Atf7	Pattern Name Modisco Significance metacluster_1/pattern_7 0.000322557 metacluster_1/pattern_12 0.0270399
Atf2	Pattern Name Modisco Significance metacluster_1/pattern_7 0.000576891 metacluster_1/pattern_12 0.03793819999999999
Atf1	Pattern Name Modisco Significance metacluster_1/pattern_7 0.0294545 metacluster_1/pattern_12 0.034850599999999995
Atf3	Pattern Name Modisco Significance metacluster_1/pattern_7 0.000643893 metacluster_1/pattern_10 0.00431329
Fosl2	Pattern Name Modisco Significance metacluster_1/pattern_7 0.00208321 metacluster_1/pattern_10 0.00758765
Creb5	Pattern Name Modisco Significance metacluster_1/pattern_7 0.00208321
Crem	Pattern Name Modisco Significance metacluster_1/pattern_7 0.00259352
Fosl1	Pattern Name Modisco Significance metacluster_1/pattern_7 0.00596836 metacluster_1/pattern_10 0.00758765
Jun	Pattern Name Modisco Significance metacluster_1/pattern_7 0.0294545 metacluster_1/pattern_10 0.00244214
Nfil3	Pattern Name Modisco Significance metacluster_1/pattern_7 0.015394299999999998
Tef	Pattern Name Modisco Significance metacluster_1/pattern_7 0.0249312
Hlf	Pattern Name Modisco Significance metacluster_1/pattern_7 0.039878500000000004
Srebf2	Pattern Name Modisco Significance metacluster_1/pattern_7 0.045248699999999996 metacluster_1/pattern_12 0.004940600000000001
Creb3l2	Pattern Name Modisco Significance metacluster_1/pattern_7 0.045248699999999996 metacluster_1/pattern_12 0.022336099999999998
Cebpb	Pattern Name Modisco Significance metacluster_1/pattern_7 0.0592125
Zfp143	Pattern Name Modisco Significance metacluster_1/pattern_8 1.3441399999999998e-22
Thap11	Pattern Name Modisco Significance metacluster_1/pattern_8 9.32266e-22
Tbx2	Pattern Name Modisco Significance metacluster_1/pattern_8 2.1488099999999999e-13
Gata1	Pattern Name Modisco Significance metacluster_1/pattern_9 0.000589915
Tal1	Pattern Name Modisco Significance metacluster_1/pattern_9 4.96281e-07
Gata4	Pattern Name Modisco Significance metacluster_1/pattern_9 0.00021865
Gata5	Pattern Name Modisco Significance metacluster_1/pattern_9 4.84705e-05
Gata6	Pattern Name Modisco Significance metacluster_1/pattern_9 4.84705e-05
Gata2	Pattern Name Modisco Significance metacluster_1/pattern_9 0.00021865
Gata3	Pattern Name Modisco Significance metacluster_1/pattern_9 0.05420030000000001
Nfe2	Pattern Name Modisco Significance metacluster_1/pattern_10 8.234950000000001e-09
Bach2	Pattern Name Modisco Significance metacluster_1/pattern_10 8.83733e-09
Nfe2l2	Pattern Name Modisco Significance metacluster_1/pattern_10 9.08513e-08
Bach1	Pattern Name Modisco Significance metacluster_1/pattern_10 2.8131000000000002e-06
Mafa	Pattern Name Modisco Significance metacluster_1/pattern_10 0.00048351300000000003
Mafk	Pattern Name Modisco Significance metacluster_1/pattern_10 0.0009676210000000001
Mafb	Pattern Name Modisco Significance metacluster_1/pattern_10 0.00244214
Mafg	Pattern Name Modisco Significance metacluster_1/pattern_10 0.00231423
Maff	Pattern Name Modisco Significance metacluster_1/pattern_10 0.00246156
Maf	Pattern Name Modisco Significance metacluster_1/pattern_10 0.00290288
Fosb	Pattern Name Modisco Significance metacluster_1/pattern_10 0.00613107
Junb	Pattern Name Modisco Significance metacluster_1/pattern_10 0.00698033
Batf	Pattern Name Modisco Significance metacluster_1/pattern_10 0.0564226
Jund	Pattern Name Modisco Significance metacluster_1/pattern_10 0.0564226
Fos	Pattern Name Modisco Significance metacluster_1/pattern_10 0.012127200000000001
Usf1	Pattern Name Modisco Significance metacluster_1/pattern_12 0.0394005
Arntl	Pattern Name Modisco Significance metacluster_1/pattern_12 0.00994497
Tfeb	Pattern Name Modisco Significance metacluster_1/pattern_12 0.0012809000000000002
Tfec	Pattern Name Modisco Significance metacluster_1/pattern_12 0.00659658
Tfe3	Pattern Name Modisco Significance metacluster_1/pattern_12 0.00584861
Mitf	Pattern Name Modisco Significance metacluster_1/pattern_12 0.0033542999999999997
Clock	Pattern Name Modisco Significance metacluster_1/pattern_12 0.0006457619999999999
Bhlhe40	Pattern Name Modisco Significance metacluster_1/pattern_12 0.00994497
Arnt	Pattern Name Modisco Significance metacluster_1/pattern_12 0.042541699999999995
Srebf1	Pattern Name Modisco Significance metacluster_1/pattern_12 0.00816779
Mlx	Pattern Name Modisco Significance metacluster_1/pattern_12 0.034850599999999995
Npas2	Pattern Name Modisco Significance metacluster_1/pattern_12 0.00394609
Tcfl5	Pattern Name Modisco Significance metacluster_1/pattern_12 0.011744200000000002
Bhlhe41	Pattern Name Modisco Significance metacluster_1/pattern_12 0.020334400000000002
Mycn	Pattern Name Modisco Significance metacluster_1/pattern_12 0.0327833
Myc	Pattern Name Modisco Significance metacluster_1/pattern_12 0.0347107
Nr1h4	Pattern Name Modisco Significance metacluster_1/pattern_12 0.0394005
Max	Pattern Name Modisco Significance metacluster_1/pattern_12 0.0457837
Sall4	Pattern Name Modisco Significance metacluster_1/pattern_14 0.04176130000000001
Irf1	Pattern Name Modisco Significance metacluster_1/pattern_16 9.26156e-08
Irf2	Pattern Name Modisco Significance metacluster_1/pattern_16 0.00379734
Irf7	Pattern Name Modisco Significance metacluster_1/pattern_16 2.3494000000000002e-05
Prdm1	Pattern Name Modisco Significance metacluster_1/pattern_16 3.53236e-05
Irf8	Pattern Name Modisco Significance metacluster_1/pattern_16 8.83391e-05
Stat1	Pattern Name Modisco Significance metacluster_1/pattern_16 0.000141381
Irf3	Pattern Name Modisco Significance metacluster_1/pattern_16 0.000743463
Stat2	Pattern Name Modisco Significance metacluster_1/pattern_16 0.000811583
Irf9	Pattern Name Modisco Significance metacluster_1/pattern_16 0.002669
Irf4	Pattern Name Modisco Significance metacluster_1/pattern_16 0.0174757
Spib	Pattern Name Modisco Significance metacluster_1/pattern_16 0.0154792
Batf3	Pattern Name Modisco Significance metacluster_1/pattern_16 0.046155400000000006
Rfx3	Pattern Name Modisco Significance metacluster_1/pattern_17 0.00496573 metacluster_1/pattern_20 0.047926300000000005
Rfx2	Pattern Name Modisco Significance metacluster_1/pattern_17 1.92182e-08 metacluster_1/pattern_20 0.0419861
Rfx4	Pattern Name Modisco Significance metacluster_1/pattern_17 0.00063704 metacluster_1/pattern_20 0.018497
Rfx7	Pattern Name Modisco Significance metacluster_1/pattern_17 0.00375798 metacluster_1/pattern_20 0.00981944
Rfx6	Pattern Name Modisco Significance metacluster_1/pattern_17 0.00931499 metacluster_1/pattern_20 0.00285078
Nfia	Pattern Name Modisco Significance metacluster_1/pattern_18 5.2852799999999996e-05
Nfib	Pattern Name Modisco Significance metacluster_1/pattern_18 0.00115195
Nfic	Pattern Name Modisco Significance metacluster_1/pattern_18 0.0165267
Zfp322a	Pattern Name Modisco Significance metacluster_1/pattern_18 0.0306466

display_paiwise_pattern_comparison(data_name, modisco_root, homer_root)

Number of CISBP TFs obtained by TF-MoDISco and Homer

Shared TFs between TF-MoDISco and Homer: #73

TF Name	Modisco	Homer
Egr1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0508357 metacluster_1/pattern_11 0.0295091 metacluster_1/pattern_14 0.0566717	Pattern Name Homer Significance motif2.motif 0.0310568
Sp1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.000947355 metacluster_1/pattern_5 0.00021018599999999998 metacluster_1/pattern_11 0.00626199 metacluster_1/pattern_12 0.00375717	Pattern Name Homer Significance motif2.motif 0.0192775
Klf3	Pattern Name Modisco Significance metacluster_1/pattern_1 8.53938e-06 metacluster_1/pattern_5 0.043813099999999994 metacluster_1/pattern_11 0.00075463 metacluster_1/pattern_12 0.00994497 metacluster_1/pattern_14 0.00418917 metacluster_1/pattern_15 0.0234577	Pattern Name Homer Significance motif2.motif 0.00451121
Batf	Pattern Name Modisco Significance metacluster_1/pattern_10 0.0564226	Pattern Name Homer Significance motif19.motif 0.0167354
Klf1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0575192 metacluster_1/pattern_11 0.00270669 metacluster_1/pattern_14 0.00683624 metacluster_1/pattern_15 0.000512786	Pattern Name Homer Significance motif2.motif 0.0192775
Tbx2	Pattern Name Modisco Significance metacluster_1/pattern_8 2.1488099999999999e-13	Pattern Name Homer Significance motif5.motif 7.27375e-05
Etv6	Pattern Name Modisco Significance metacluster_1/pattern_2 0.020094499999999998	Pattern Name Homer Significance motif3.motif 0.00299144
Atf3	Pattern Name Modisco Significance metacluster_1/pattern_7 0.000643893 metacluster_1/pattern_10 0.00431329	Pattern Name Homer Significance motif8.motif 0.050685900000000006 motif19.motif 0.00707673
Ctcfl	Pattern Name Modisco Significance metacluster_1/pattern_0 3.42107e-08 metacluster_1/pattern_7 0.051116800000000004 metacluster_1/pattern_13 0.00144704	Pattern Name Homer Significance motif1.motif 3.17068e-05
Sp5	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0205774	Pattern Name Homer Significance motif2.motif 0.0262863
Nfe2	Pattern Name Modisco Significance metacluster_1/pattern_10 8.234950000000001e-09	Pattern Name Homer Significance motif19.motif 9.42994e-05
E2f4	Pattern Name Modisco Significance metacluster_1/pattern_1 0.000313278 metacluster_1/pattern_11 0.011967799999999999	Pattern Name Homer Significance motif2.motif 0.0192083
Etv2	Pattern Name Modisco Significance metacluster_1/pattern_2 0.00612704	Pattern Name Homer Significance motif3.motif 0.05310940000000001
Etv5	Pattern Name Modisco Significance metacluster_1/pattern_2 0.000758883	Pattern Name Homer Significance motif3.motif 0.00232817
Nfe2l2	Pattern Name Modisco Significance metacluster_1/pattern_10 9.08513e-08	Pattern Name Homer Significance motif19.motif 0.00036012699999999996
Mafa	Pattern Name Modisco Significance metacluster_1/pattern_10 0.00048351300000000003	Pattern Name Homer Significance motif19.motif 0.00180477
Ehf	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0205425	Pattern Name Homer Significance motif3.motif 0.0177187
Foxi1	Pattern Name Modisco Significance metacluster_1/pattern_4 4.9049e-06	Pattern Name Homer Significance motif6.motif 0.024562999999999998
Jun	Pattern Name Modisco Significance metacluster_1/pattern_7 0.0294545 metacluster_1/pattern_10 0.00244214	Pattern Name Homer Significance motif19.motif 0.00263912
Fosb	Pattern Name Modisco Significance metacluster_1/pattern_10 0.00613107	Pattern Name Homer Significance motif19.motif 0.00881238
Nfyb	Pattern Name Modisco Significance metacluster_1/pattern_4 2.3095400000000002e-10	Pattern Name Homer Significance motif6.motif 0.00137619
Zfp143	Pattern Name Modisco Significance metacluster_1/pattern_8 1.3441399999999998e-22	Pattern Name Homer Significance motif5.motif 9.19249e-06
Jund	Pattern Name Modisco Significance metacluster_1/pattern_10 0.0564226	Pattern Name Homer Significance motif19.motif 0.05952230000000001
Pbx3	Pattern Name Modisco Significance metacluster_1/pattern_4 0.00015463399999999998	Pattern Name Homer Significance motif6.motif 0.024562999999999998
Klf6	Pattern Name Modisco Significance metacluster_1/pattern_1 0.000470355 metacluster_1/pattern_11 0.008661499999999999 metacluster_1/pattern_14 0.00683624	Pattern Name Homer Significance motif2.motif 0.029653
Sp3	Pattern Name Modisco Significance metacluster_1/pattern_1 1.6421199999999998e-05 metacluster_1/pattern_5 0.000459035 metacluster_1/pattern_11 0.00122027 metacluster_1/pattern_12 0.00144906 metacluster_1/pattern_14 0.0336754 metacluster_1/pattern_17 0.00301412 metacluster_1/pattern_20 0.0524862	Pattern Name Homer Significance motif2.motif 0.00729767
Elk4	Pattern Name Modisco Significance metacluster_1/pattern_2 0.00188017	Pattern Name Homer Significance motif3.motif 0.00317101
Klf4	Pattern Name Modisco Significance metacluster_1/pattern_1 0.015972999999999998 metacluster_1/pattern_11 0.00568979 metacluster_1/pattern_14 0.00642204 metacluster_1/pattern_15 0.00114863	Pattern Name Homer Significance motif2.motif 0.0117463
Junb	Pattern Name Modisco Significance metacluster_1/pattern_10 0.00698033	Pattern Name Homer Significance motif19.motif 0.00881238
Elf4	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0126242	Pattern Name Homer Significance motif3.motif 0.00336755
Jdp2	Pattern Name Modisco Significance metacluster_1/pattern_7 0.00103931 metacluster_1/pattern_10 0.013498300000000001	Pattern Name Homer Significance motif19.motif 0.022239
Bach2	Pattern Name Modisco Significance metacluster_1/pattern_10 8.83733e-09	Pattern Name Homer Significance motif19.motif 1.4690399999999999e-06
Klf8	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00143922 metacluster_1/pattern_11 0.00075463 metacluster_1/pattern_14 0.0154851 metacluster_1/pattern_15 0.000884193	Pattern Name Homer Significance motif2.motif 0.00264885
Spdef	Pattern Name Modisco Significance metacluster_1/pattern_2 0.020094499999999998	Pattern Name Homer Significance motif3.motif 0.019949
Elf2	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0188382	Pattern Name Homer Significance motif3.motif 0.00426027
Fos	Pattern Name Modisco Significance metacluster_1/pattern_10 0.012127200000000001	Pattern Name Homer Significance motif19.motif 0.023697299999999998
Elf5	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0337892	Pattern Name Homer Significance motif3.motif 0.00761036
Nrf1	Pattern Name Modisco Significance metacluster_1/pattern_3 3.83928e-07	Pattern Name Homer Significance motif7.motif 0.000329401
Yy1	Pattern Name Modisco Significance metacluster_1/pattern_5 2.15581e-06	Pattern Name Homer Significance motif12.motif 0.014925999999999998
Nfya	Pattern Name Modisco Significance metacluster_1/pattern_4 4.9049e-06	Pattern Name Homer Significance motif6.motif 0.00185632
Klf7	Pattern Name Modisco Significance metacluster_1/pattern_1 0.000947355 metacluster_1/pattern_11 0.000544951 metacluster_1/pattern_14 0.0336754 metacluster_1/pattern_15 0.00189865	Pattern Name Homer Significance motif2.motif 0.00264885
Spi1	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0188382	Pattern Name Homer Significance motif3.motif 0.053263
Fosl2	Pattern Name Modisco Significance metacluster_1/pattern_7 0.00208321 metacluster_1/pattern_10 0.00758765	Pattern Name Homer Significance motif19.motif 0.0204294
Sp2	Pattern Name Modisco Significance metacluster_1/pattern_1 8.53938e-06 metacluster_1/pattern_5 8.48792e-05 metacluster_1/pattern_7 0.0157325 metacluster_1/pattern_11 0.00122027 metacluster_1/pattern_12 0.00121332 metacluster_1/pattern_14 0.0378043 metacluster_1/pattern_17 0.00378653 metacluster_1/pattern_20 0.018497	Pattern Name Homer Significance motif2.motif 0.00980913
Taf1	Pattern Name Modisco Significance metacluster_1/pattern_5 2.15581e-06	Pattern Name Homer Significance motif12.motif 0.0020725
Klf5	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0221466 metacluster_1/pattern_14 0.0154851 metacluster_1/pattern_15 0.024975999999999998	Pattern Name Homer Significance motif2.motif 0.0259743
Atf1	Pattern Name Modisco Significance metacluster_1/pattern_7 0.0294545 metacluster_1/pattern_12 0.034850599999999995	Pattern Name Homer Significance motif8.motif 0.050685900000000006
Klf12	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0161543 metacluster_1/pattern_11 0.00075463 metacluster_1/pattern_14 0.0313279 metacluster_1/pattern_15 0.00189865	Pattern Name Homer Significance motif2.motif 0.029653
Elk1	Pattern Name Modisco Significance metacluster_1/pattern_2 0.00140481	Pattern Name Homer Significance motif3.motif 0.0028279
Nfyc	Pattern Name Modisco Significance metacluster_1/pattern_4 4.9049e-06	Pattern Name Homer Significance motif6.motif 0.00311267
Creb1	Pattern Name Modisco Significance metacluster_1/pattern_7 0.0007860660000000001 metacluster_1/pattern_12 0.0270399	Pattern Name Homer Significance motif8.motif 0.00581664
Maff	Pattern Name Modisco Significance metacluster_1/pattern_10 0.00246156	Pattern Name Homer Significance motif19.motif 0.012829499999999999
Etv4	Pattern Name Modisco Significance metacluster_1/pattern_2 0.00612704	Pattern Name Homer Significance motif3.motif 0.00495915
Gabpa	Pattern Name Modisco Significance metacluster_1/pattern_2 0.00181184	Pattern Name Homer Significance motif3.motif 0.0028279
Elk3	Pattern Name Modisco Significance metacluster_1/pattern_2 0.00107754	Pattern Name Homer Significance motif3.motif 0.0028279
Sp4	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00272863 metacluster_1/pattern_11 0.012018299999999999 metacluster_1/pattern_14 0.00747358 metacluster_1/pattern_15 0.0031203000000000003	Pattern Name Homer Significance motif2.motif 0.0192775
Ctcf	Pattern Name Modisco Significance metacluster_1/pattern_0 1.14386e-13 metacluster_1/pattern_13 3.1640700000000004e-05	Pattern Name Homer Significance motif1.motif 5.04779e-07
Etv3	Pattern Name Modisco Significance metacluster_1/pattern_2 0.00392187	Pattern Name Homer Significance motif3.motif 0.00390927
Elf3	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0514861	Pattern Name Homer Significance motif3.motif 0.0346664
XP_911724.4	Pattern Name Modisco Significance metacluster_1/pattern_2 0.00396198	Pattern Name Homer Significance motif3.motif 0.00390927
Etv1	Pattern Name Modisco Significance metacluster_1/pattern_2 0.00196806	Pattern Name Homer Significance motif3.motif 0.0028279
Mafg	Pattern Name Modisco Significance metacluster_1/pattern_10 0.00231423	Pattern Name Homer Significance motif19.motif 0.00881238
Ets1	Pattern Name Modisco Significance metacluster_1/pattern_2 0.00275149	Pattern Name Homer Significance motif3.motif 0.00413051
Fev	Pattern Name Modisco Significance metacluster_1/pattern_2 0.000399764	Pattern Name Homer Significance motif3.motif 0.0028279
Thap11	Pattern Name Modisco Significance metacluster_1/pattern_8 9.32266e-22	Pattern Name Homer Significance motif5.motif 1.17652e-06
Mafk	Pattern Name Modisco Significance metacluster_1/pattern_10 0.0009676210000000001	Pattern Name Homer Significance motif19.motif 0.00450059
Mafb	Pattern Name Modisco Significance metacluster_1/pattern_10 0.00244214	Pattern Name Homer Significance motif19.motif 0.012069400000000001
Fli1	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0028921	Pattern Name Homer Significance motif3.motif 0.00343897
Bach1	Pattern Name Modisco Significance metacluster_1/pattern_10 2.8131000000000002e-06	Pattern Name Homer Significance motif19.motif 9.42994e-05
Erg	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0028921	Pattern Name Homer Significance motif3.motif 0.00343897
Elf1	Pattern Name Modisco Significance metacluster_1/pattern_2 0.000610843	Pattern Name Homer Significance motif3.motif 0.00232817
Fosl1	Pattern Name Modisco Significance metacluster_1/pattern_7 0.00596836 metacluster_1/pattern_10 0.00758765	Pattern Name Homer Significance motif19.motif 0.0176856
Maf	Pattern Name Modisco Significance metacluster_1/pattern_10 0.00290288	Pattern Name Homer Significance motif19.motif 0.017098500000000003

Unique TF-MoDISco TFs: #70

TF Name	Modisco	Homer
Egr2	Pattern Name Modisco Significance metacluster_1/pattern_1 0.040923900000000006 metacluster_1/pattern_5 0.0411541 metacluster_1/pattern_11 0.047843199999999995 metacluster_1/pattern_14 0.046435199999999996	Absent
Tfe3	Pattern Name Modisco Significance metacluster_1/pattern_12 0.00584861	Absent
Nr1h4	Pattern Name Modisco Significance metacluster_1/pattern_12 0.0394005	Absent
Atf2	Pattern Name Modisco Significance metacluster_1/pattern_7 0.000576891 metacluster_1/pattern_12 0.03793819999999999	Absent
Max	Pattern Name Modisco Significance metacluster_1/pattern_12 0.0457837	Absent
E2f1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0118542	Absent
Zfp42	Pattern Name Modisco Significance metacluster_1/pattern_5 0.00746375	Absent
Sall4	Pattern Name Modisco Significance metacluster_1/pattern_14 0.04176130000000001	Absent
Irf2	Pattern Name Modisco Significance metacluster_1/pattern_16 0.00379734	Absent
Nfia	Pattern Name Modisco Significance metacluster_1/pattern_18 5.2852799999999996e-05	Absent
Tcfl5	Pattern Name Modisco Significance metacluster_1/pattern_12 0.011744200000000002	Absent
Srebf1	Pattern Name Modisco Significance metacluster_1/pattern_12 0.00816779	Absent
Mxi1	Pattern Name Modisco Significance metacluster_1/pattern_5 0.0512065 metacluster_1/pattern_12 0.00253943	Absent
Mitf	Pattern Name Modisco Significance metacluster_1/pattern_12 0.0033542999999999997	Absent
Zfp281	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0367805 metacluster_1/pattern_11 0.0114751	Absent
Bhlhe41	Pattern Name Modisco Significance metacluster_1/pattern_12 0.020334400000000002	Absent
Nfil3	Pattern Name Modisco Significance metacluster_1/pattern_7 0.015394299999999998	Absent
Irf3	Pattern Name Modisco Significance metacluster_1/pattern_16 0.000743463	Absent
Zbtb17	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0115059 metacluster_1/pattern_5 0.0137196 metacluster_1/pattern_12 0.0426498	Absent
Irf7	Pattern Name Modisco Significance metacluster_1/pattern_16 2.3494000000000002e-05	Absent
Rfx1	Pattern Name Modisco Significance metacluster_1/pattern_5 0.00642362 metacluster_1/pattern_12 0.0102434 metacluster_1/pattern_17 6.8644799999999994e-09 metacluster_1/pattern_20 0.0004891359999999999	Absent
Mlx	Pattern Name Modisco Significance metacluster_1/pattern_12 0.034850599999999995	Absent
Zfx	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0436433 metacluster_1/pattern_3 0.029632099999999998 metacluster_1/pattern_5 0.00180904 metacluster_1/pattern_7 0.0272031 metacluster_1/pattern_12 0.012994299999999999 metacluster_1/pattern_17 0.014416499999999999 metacluster_1/pattern_20 0.0217056	Absent
Irf8	Pattern Name Modisco Significance metacluster_1/pattern_16 8.83391e-05	Absent
Tef	Pattern Name Modisco Significance metacluster_1/pattern_7 0.0249312	Absent
Gata6	Pattern Name Modisco Significance metacluster_1/pattern_9 4.84705e-05	Absent
Gata5	Pattern Name Modisco Significance metacluster_1/pattern_9 4.84705e-05	Absent
Clock	Pattern Name Modisco Significance metacluster_1/pattern_12 0.0006457619999999999	Absent
Egr3	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0508357	Absent
Cebpb	Pattern Name Modisco Significance metacluster_1/pattern_7 0.0592125	Absent
Gata1	Pattern Name Modisco Significance metacluster_1/pattern_9 0.000589915	Absent
Stat1	Pattern Name Modisco Significance metacluster_1/pattern_16 0.000141381	Absent
Rfx7	Pattern Name Modisco Significance metacluster_1/pattern_17 0.00375798 metacluster_1/pattern_20 0.00981944	Absent
Irf1	Pattern Name Modisco Significance metacluster_1/pattern_16 9.26156e-08	Absent
Myc	Pattern Name Modisco Significance metacluster_1/pattern_12 0.0347107	Absent
Arntl	Pattern Name Modisco Significance metacluster_1/pattern_12 0.00994497	Absent
Rfx2	Pattern Name Modisco Significance metacluster_1/pattern_17 1.92182e-08 metacluster_1/pattern_20 0.0419861	Absent
Tal1	Pattern Name Modisco Significance metacluster_1/pattern_9 4.96281e-07	Absent
Srebf2	Pattern Name Modisco Significance metacluster_1/pattern_7 0.045248699999999996 metacluster_1/pattern_12 0.004940600000000001	Absent
Nfib	Pattern Name Modisco Significance metacluster_1/pattern_18 0.00115195	Absent
Prdm1	Pattern Name Modisco Significance metacluster_1/pattern_16 3.53236e-05	Absent
Rfx6	Pattern Name Modisco Significance metacluster_1/pattern_17 0.00931499 metacluster_1/pattern_20 0.00285078	Absent
Hlf	Pattern Name Modisco Significance metacluster_1/pattern_7 0.039878500000000004	Absent
Crem	Pattern Name Modisco Significance metacluster_1/pattern_7 0.00259352	Absent
Rfx4	Pattern Name Modisco Significance metacluster_1/pattern_17 0.00063704 metacluster_1/pattern_20 0.018497	Absent
Creb3l2	Pattern Name Modisco Significance metacluster_1/pattern_7 0.045248699999999996 metacluster_1/pattern_12 0.022336099999999998	Absent
Usf1	Pattern Name Modisco Significance metacluster_1/pattern_12 0.0394005	Absent
Irf4	Pattern Name Modisco Significance metacluster_1/pattern_16 0.0174757	Absent
Bhlhe40	Pattern Name Modisco Significance metacluster_1/pattern_12 0.00994497	Absent
Zfp740	Pattern Name Modisco Significance metacluster_1/pattern_1 0.045426999999999995	Absent
Gata4	Pattern Name Modisco Significance metacluster_1/pattern_9 0.00021865	Absent
Tfeb	Pattern Name Modisco Significance metacluster_1/pattern_12 0.0012809000000000002	Absent
Nfic	Pattern Name Modisco Significance metacluster_1/pattern_18 0.0165267	Absent
Tfec	Pattern Name Modisco Significance metacluster_1/pattern_12 0.00659658	Absent
Zbtb33	Pattern Name Modisco Significance metacluster_1/pattern_6 0.0302587	Absent
Stat2	Pattern Name Modisco Significance metacluster_1/pattern_16 0.000811583	Absent
Npas2	Pattern Name Modisco Significance metacluster_1/pattern_12 0.00394609	Absent
Wt1	Pattern Name Modisco Significance metacluster_1/pattern_5 0.0270858	Absent
Spib	Pattern Name Modisco Significance metacluster_1/pattern_16 0.0154792	Absent
Arnt	Pattern Name Modisco Significance metacluster_1/pattern_12 0.042541699999999995	Absent
Zfp322a	Pattern Name Modisco Significance metacluster_1/pattern_18 0.0306466	Absent
Usf2	Pattern Name Modisco Significance metacluster_1/pattern_5 0.058292 metacluster_1/pattern_7 0.000422534 metacluster_1/pattern_12 0.013596 metacluster_1/pattern_17 0.0288161	Absent
Batf3	Pattern Name Modisco Significance metacluster_1/pattern_16 0.046155400000000006	Absent
Irf9	Pattern Name Modisco Significance metacluster_1/pattern_16 0.002669	Absent
Gata3	Pattern Name Modisco Significance metacluster_1/pattern_9 0.05420030000000001	Absent
Creb5	Pattern Name Modisco Significance metacluster_1/pattern_7 0.00208321	Absent
Mycn	Pattern Name Modisco Significance metacluster_1/pattern_12 0.0327833	Absent
Rfx3	Pattern Name Modisco Significance metacluster_1/pattern_17 0.00496573 metacluster_1/pattern_20 0.047926300000000005	Absent
Atf7	Pattern Name Modisco Significance metacluster_1/pattern_7 0.000322557 metacluster_1/pattern_12 0.0270399	Absent
Gata2	Pattern Name Modisco Significance metacluster_1/pattern_9 0.00021865	Absent

Unique Homer TFs: #3

TF Name	Modisco	Homer
Zic3	Absent	Pattern Name Homer Significance motif1.motif 0.0229848
Zic2	Absent	Pattern Name Homer Significance motif1.motif 0.0229848
Zbtb1	Absent	Pattern Name Homer Significance motif2.motif 0.0309465