# Parameters
data_name = "CD4+CD8-TCR+CD25+Foxp3-;A;CL"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
tomtom_report_root = "http://mitra.stanford.edu/kundaje/msharmin/report/tomtom_outs/cells"
task_dir = "task_40-naivegw"
perf_file = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/fineFactorized/task_40-naivegw/NaiveauPRC.txt"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
reportfile = "/mnt/lab_data/kundaje/msharmin/annotations/filtering samples_MS2.xlsx"
sheetname = "filter23"

from matlas.reports import display_metadata

load data from labcluster

Using TensorFlow backend.
2019-08-30 18:48:26,578 [WARNING] git-lfs not installed

display_metadata(data_name, perf_file, reportfile, sheetname)

Sample Information

MetaData Name	Description
Cell type	CD4+CD8-TCRhi CD25+ Foxp3-
Cell Group	T cells
Experiment Name	ATAC
Experiment Group	Casellas Lab

Pipeline Output

replicate	Naïve overlap peaks	IDR peaks	TSS enrichment (< 8 is very poor <10 is low)	Final number of unique mapping, dup-filtered, chrM filtered reads	Number of reads in called peak regions	Fraction of reads in called peak regions	Number of reads in promoter regions	Fraction of reads in promoter regions	Number of reads in enhancer regions	Fraction of reads in enhancer regions
rep1	120668	90810	11.0764	54525714	8747405	0.1605	5595271	0.1027	18615927	0.3415

Modelling Metadata

Metric	Value
auPRC	0.5646
Calibrated Recall at 50% FDR	0.235
Number of Positive Examples in Test Data	91850
Number of Negative Examples in Test Data	7979001
Imbalance Ratio in Test Data	0.0114
Test Chromosomes	chr2, chr3, chr19

from matlas.reports import display_paiwise_pattern_comparison
from matlas.reports import display_denovo_patterns

display_denovo_patterns(data_name, modisco_root=modisco_root)

TF-MoDISco is using the TensorFlow backend.

The following two links show list of Denovo Patterns and corresponding Motifs discovered by TF-MoDISco

Click here for Denovo Patterns by TF-MoDISco: #21

Pattern Name	TF Name(s)	Modisco
metacluster_1/pattern_0 # seqlets: 4410 SequenceContrib ScoresHyp_Contrib Scores	Ets1, Erg, Etv4, Etv2, Fli1, Elk4, Elk1, Gabpa, Spi1, Etv6, Elk3, Etv5, Elf2, Fev, XP_911724.4, Etv3, Etv1, Spib, Elf1, Ehf, Elf4, Elf5, Elf3, Irf8, Irf4, Spic, Spdef, Zscan10, Stat3
metacluster_1/pattern_1 # seqlets: 3923 SequenceContrib ScoresHyp_Contrib Scores	Sp2, Sp3, Klf3, Sp1, Sp4, Klf6, E2f4, Klf4, Klf5, Egr1, Klf7, Zbtb17, Sp5, Klf8, Klf12, Egr2, Zfp281, Wt1, Klf1, Maz, E2f1, Srebf2, Klf15, Sall4, Egr3
metacluster_1/pattern_2 # seqlets: 3835 SequenceContrib ScoresHyp_Contrib Scores	Ctcf, Ctcfl
metacluster_1/pattern_3 # seqlets: 1624 SequenceContrib ScoresHyp_Contrib Scores	Nrf1
metacluster_1/pattern_4 # seqlets: 1232 SequenceContrib ScoresHyp_Contrib Scores	Nfyb, Nfyc, Nfya, Foxi1, Pbx3
metacluster_1/pattern_5 # seqlets: 1015 SequenceContrib ScoresHyp_Contrib Scores	Irf1, Irf2, Stat1, Prdm1, Irf7, Stat2, Irf3, Irf9, Batf3
metacluster_1/pattern_6 # seqlets: 746 SequenceContrib ScoresHyp_Contrib Scores	Taf1, Yy1, Zfx, Rfx1, Zfp42, Mxi1
metacluster_1/pattern_7 # seqlets: 679 SequenceContrib ScoresHyp_Contrib Scores	Atf1, Atf7, Creb1, Atf2, Creb5, Jdp2, Crem, Jun, Rxrb, Dbp, Nfil3, Hlf, Mafb, Tfec, Tef, Cebpb, Atf3, Srebf1, Bhlhe40, Cebpa
metacluster_1/pattern_8 # seqlets: 674 SequenceContrib ScoresHyp_Contrib Scores
metacluster_1/pattern_9 # seqlets: 660 SequenceContrib ScoresHyp_Contrib Scores	Usf1, Usf2, Tfeb, Arntl, Tfe3, Mitf, Clock, Arnt, Npas2, Mlx, Mycn, Creb3l2, Myc, Max, Tcfl5, Xbp1, Bhlhe41, Mlxip, Rarg, Hes1
metacluster_1/pattern_10 # seqlets: 656 SequenceContrib ScoresHyp_Contrib Scores	Lef1, Tcf7l2, Tcf7l1, Tcf7, Tcf3
metacluster_1/pattern_11 # seqlets: 631 SequenceContrib ScoresHyp_Contrib Scores	Zfp143, Thap11, Tbx2
metacluster_1/pattern_12 # seqlets: 592 SequenceContrib ScoresHyp_Contrib Scores	Runx1, Cbfb, Runx2, Runx3
metacluster_1/pattern_13 # seqlets: 244 SequenceContrib ScoresHyp_Contrib Scores	Fosl2, Jund, Fos, Junb, Fosb, Batf, Fosl1, Bach2, Bach1, Nfe2l2, Nfe2, Mafk, Mafa
metacluster_1/pattern_14 # seqlets: 234 SequenceContrib ScoresHyp_Contrib Scores	Nfkb1, Nfkb2, Rela, Relb, Rel
metacluster_1/pattern_15 # seqlets: 224 SequenceContrib ScoresHyp_Contrib Scores	Rfx3, Rfx2, Rfx4, Rfx7, Rfx6
metacluster_1/pattern_16 # seqlets: 223 SequenceContrib ScoresHyp_Contrib Scores	Mef2d, Mef2a, Mef2c
metacluster_1/pattern_17 # seqlets: 219 SequenceContrib ScoresHyp_Contrib Scores	Zbtb33
metacluster_1/pattern_18 # seqlets: 156 SequenceContrib ScoresHyp_Contrib Scores
metacluster_1/pattern_19 # seqlets: 64 SequenceContrib ScoresHyp_Contrib Scores	Pou2f2, Pou5f1, Nanog, Sox2
metacluster_1/pattern_20 # seqlets: 58 SequenceContrib ScoresHyp_Contrib Scores	Nfia, Nfib, Nfic

Click here for Motifs by TF-MoDISco: #163

TF Name	Pattern(s)
Ets1	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00195544 metacluster_1/pattern_8 0.0531414
Erg	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00195544
Etv4	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00212494
Etv2	Pattern Name Modisco Significance metacluster_1/pattern_0 2.9743000000000003e-05
Fli1	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00195544
Elk4	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00229605
Elk1	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00229605
Gabpa	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00212494
Spi1	Pattern Name Modisco Significance metacluster_1/pattern_0 0.0478351
Etv6	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00167936
Elk3	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00212494
Etv5	Pattern Name Modisco Significance metacluster_1/pattern_0 0.0010062
Elf2	Pattern Name Modisco Significance metacluster_1/pattern_0 0.0146359
Fev	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00106596
XP_911724.4	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00212494
Etv3	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00212494
Etv1	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00238849
Spib	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00369505 metacluster_1/pattern_5 0.00620244
Elf1	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00584666
Ehf	Pattern Name Modisco Significance metacluster_1/pattern_0 0.0141068
Elf4	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00863218
Elf5	Pattern Name Modisco Significance metacluster_1/pattern_0 0.038533
Elf3	Pattern Name Modisco Significance metacluster_1/pattern_0 0.0309611
Irf8	Pattern Name Modisco Significance metacluster_1/pattern_0 0.018831599999999997 metacluster_1/pattern_5 9.56337e-07
Irf4	Pattern Name Modisco Significance metacluster_1/pattern_0 0.0210068 metacluster_1/pattern_5 0.00949315
Spic	Pattern Name Modisco Significance metacluster_1/pattern_0 0.024631999999999998
Spdef	Pattern Name Modisco Significance metacluster_1/pattern_0 0.0359184
Zscan10	Pattern Name Modisco Significance metacluster_1/pattern_0 0.037148400000000005
Stat3	Pattern Name Modisco Significance metacluster_1/pattern_0 0.0570761 metacluster_1/pattern_18 0.045381
Sp2	Pattern Name Modisco Significance metacluster_1/pattern_1 4.1266000000000005e-10 metacluster_1/pattern_6 6.62901e-05 metacluster_1/pattern_17 0.0006644660000000001
Sp3	Pattern Name Modisco Significance metacluster_1/pattern_1 4.80473e-09 metacluster_1/pattern_6 0.000711791 metacluster_1/pattern_17 0.00380792
Klf3	Pattern Name Modisco Significance metacluster_1/pattern_1 2.57988e-07 metacluster_1/pattern_6 0.037925
Sp1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00048243 metacluster_1/pattern_6 0.00038191699999999996 metacluster_1/pattern_17 0.00172723
Sp4	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00161436
Klf6	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00032882699999999996
E2f4	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00045575300000000004
Klf4	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00115294
Klf5	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00048243
Egr1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0243273
Klf7	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00105097
Zbtb17	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00108514 metacluster_1/pattern_6 0.0129002
Sp5	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00108514
Klf8	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0016742
Klf12	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00216563
Egr2	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0443456 metacluster_1/pattern_6 0.049155199999999996
Zfp281	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0598529
Wt1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00390006 metacluster_1/pattern_6 0.0461629
Klf1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0292954
Maz	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00687441 metacluster_1/pattern_6 0.043699
E2f1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.012257200000000001
Srebf2	Pattern Name Modisco Significance metacluster_1/pattern_1 0.024230200000000004 metacluster_1/pattern_9 0.0116917
Klf15	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0243273
Sall4	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0243273
Egr3	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0429811
Ctcf	Pattern Name Modisco Significance metacluster_1/pattern_2 1.2173400000000002e-15
Ctcfl	Pattern Name Modisco Significance metacluster_1/pattern_2 3.9009900000000004e-08
Nrf1	Pattern Name Modisco Significance metacluster_1/pattern_3 9.51627e-09
Nfyb	Pattern Name Modisco Significance metacluster_1/pattern_4 1.59327e-09
Nfyc	Pattern Name Modisco Significance metacluster_1/pattern_4 5.584009999999999e-06
Nfya	Pattern Name Modisco Significance metacluster_1/pattern_4 5.584009999999999e-06
Foxi1	Pattern Name Modisco Significance metacluster_1/pattern_4 6.24505e-06
Pbx3	Pattern Name Modisco Significance metacluster_1/pattern_4 0.000139405
Irf1	Pattern Name Modisco Significance metacluster_1/pattern_5 2.80296e-12
Irf2	Pattern Name Modisco Significance metacluster_1/pattern_5 0.000489427
Stat1	Pattern Name Modisco Significance metacluster_1/pattern_5 2.2365700000000002e-05
Prdm1	Pattern Name Modisco Significance metacluster_1/pattern_5 4.94133e-05
Irf7	Pattern Name Modisco Significance metacluster_1/pattern_5 7.40155e-05
Stat2	Pattern Name Modisco Significance metacluster_1/pattern_5 0.0005959380000000001
Irf3	Pattern Name Modisco Significance metacluster_1/pattern_5 0.0008224489999999999
Irf9	Pattern Name Modisco Significance metacluster_1/pattern_5 0.00287636
Batf3	Pattern Name Modisco Significance metacluster_1/pattern_5 0.010251799999999998
Taf1	Pattern Name Modisco Significance metacluster_1/pattern_6 6.2352899999999996e-06
Yy1	Pattern Name Modisco Significance metacluster_1/pattern_6 1.1941700000000001e-05
Zfx	Pattern Name Modisco Significance metacluster_1/pattern_6 0.00241876 metacluster_1/pattern_17 0.0225311
Rfx1	Pattern Name Modisco Significance metacluster_1/pattern_6 0.00634386 metacluster_1/pattern_15 2.51757e-07
Zfp42	Pattern Name Modisco Significance metacluster_1/pattern_6 0.013542799999999999
Mxi1	Pattern Name Modisco Significance metacluster_1/pattern_6 0.0421615
Atf1	Pattern Name Modisco Significance metacluster_1/pattern_7 0.012663899999999999 metacluster_1/pattern_9 0.038285599999999996
Atf7	Pattern Name Modisco Significance metacluster_1/pattern_7 0.001425 metacluster_1/pattern_9 0.044610000000000004
Creb1	Pattern Name Modisco Significance metacluster_1/pattern_7 0.00143418 metacluster_1/pattern_9 0.0353705
Atf2	Pattern Name Modisco Significance metacluster_1/pattern_7 0.00161582
Creb5	Pattern Name Modisco Significance metacluster_1/pattern_7 0.00088554
Jdp2	Pattern Name Modisco Significance metacluster_1/pattern_7 0.00557895 metacluster_1/pattern_13 0.000267308
Crem	Pattern Name Modisco Significance metacluster_1/pattern_7 0.00608269
Jun	Pattern Name Modisco Significance metacluster_1/pattern_7 0.0534889 metacluster_1/pattern_13 4.07608e-05
Rxrb	Pattern Name Modisco Significance metacluster_1/pattern_7 0.0247826
Dbp	Pattern Name Modisco Significance metacluster_1/pattern_7 0.0564569
Nfil3	Pattern Name Modisco Significance metacluster_1/pattern_7 0.0564569
Hlf	Pattern Name Modisco Significance metacluster_1/pattern_7 0.029432999999999997 metacluster_1/pattern_9 0.052936000000000004
Mafb	Pattern Name Modisco Significance metacluster_1/pattern_7 0.03445619999999999
Tfec	Pattern Name Modisco Significance metacluster_1/pattern_7 0.03445619999999999 metacluster_1/pattern_9 0.000277425
Tef	Pattern Name Modisco Significance metacluster_1/pattern_7 0.0386224
Cebpb	Pattern Name Modisco Significance metacluster_1/pattern_7 0.055255099999999994
Atf3	Pattern Name Modisco Significance metacluster_1/pattern_7 0.0472255 metacluster_1/pattern_13 7.24748e-05
Srebf1	Pattern Name Modisco Significance metacluster_1/pattern_7 0.0534889 metacluster_1/pattern_9 0.038285599999999996
Bhlhe40	Pattern Name Modisco Significance metacluster_1/pattern_7 0.0534889 metacluster_1/pattern_9 0.03396969999999999
Cebpa	Pattern Name Modisco Significance metacluster_1/pattern_7 0.0534889
Usf1	Pattern Name Modisco Significance metacluster_1/pattern_9 0.011489
Usf2	Pattern Name Modisco Significance metacluster_1/pattern_9 0.00188385 metacluster_1/pattern_17 0.013556499999999999
Tfeb	Pattern Name Modisco Significance metacluster_1/pattern_9 0.00022658900000000002
Arntl	Pattern Name Modisco Significance metacluster_1/pattern_9 0.00878068
Tfe3	Pattern Name Modisco Significance metacluster_1/pattern_9 0.000277425
Mitf	Pattern Name Modisco Significance metacluster_1/pattern_9 0.0005228769999999999
Clock	Pattern Name Modisco Significance metacluster_1/pattern_9 0.052936000000000004
Arnt	Pattern Name Modisco Significance metacluster_1/pattern_9 0.00106335
Npas2	Pattern Name Modisco Significance metacluster_1/pattern_9 0.00208366
Mlx	Pattern Name Modisco Significance metacluster_1/pattern_9 0.00232582
Mycn	Pattern Name Modisco Significance metacluster_1/pattern_9 0.038285599999999996
Creb3l2	Pattern Name Modisco Significance metacluster_1/pattern_9 0.0156738
Myc	Pattern Name Modisco Significance metacluster_1/pattern_9 0.0126917
Max	Pattern Name Modisco Significance metacluster_1/pattern_9 0.0479686
Tcfl5	Pattern Name Modisco Significance metacluster_1/pattern_9 0.014424000000000001
Xbp1	Pattern Name Modisco Significance metacluster_1/pattern_9 0.03396969999999999
Bhlhe41	Pattern Name Modisco Significance metacluster_1/pattern_9 0.039495300000000004
Mlxip	Pattern Name Modisco Significance metacluster_1/pattern_9 0.0546009
Rarg	Pattern Name Modisco Significance metacluster_1/pattern_9 0.0550452
Hes1	Pattern Name Modisco Significance metacluster_1/pattern_9 0.0566489
Lef1	Pattern Name Modisco Significance metacluster_1/pattern_10 2.05222e-06
Tcf7l2	Pattern Name Modisco Significance metacluster_1/pattern_10 0.00569957
Tcf7l1	Pattern Name Modisco Significance metacluster_1/pattern_10 0.000104381
Tcf7	Pattern Name Modisco Significance metacluster_1/pattern_10 0.00712264
Tcf3	Pattern Name Modisco Significance metacluster_1/pattern_10 0.000115503
Zfp143	Pattern Name Modisco Significance metacluster_1/pattern_11 6.234439999999999e-22
Thap11	Pattern Name Modisco Significance metacluster_1/pattern_11 7.69068e-21
Tbx2	Pattern Name Modisco Significance metacluster_1/pattern_11 2.4300500000000003e-13
Runx1	Pattern Name Modisco Significance metacluster_1/pattern_12 0.011014399999999999
Cbfb	Pattern Name Modisco Significance metacluster_1/pattern_12 0.011014399999999999
Runx2	Pattern Name Modisco Significance metacluster_1/pattern_12 0.011014399999999999
Runx3	Pattern Name Modisco Significance metacluster_1/pattern_12 0.011014399999999999
Fosl2	Pattern Name Modisco Significance metacluster_1/pattern_13 7.24748e-05
Jund	Pattern Name Modisco Significance metacluster_1/pattern_13 0.0107285
Fos	Pattern Name Modisco Significance metacluster_1/pattern_13 7.24748e-05
Junb	Pattern Name Modisco Significance metacluster_1/pattern_13 0.0451348
Fosb	Pattern Name Modisco Significance metacluster_1/pattern_13 7.24748e-05
Batf	Pattern Name Modisco Significance metacluster_1/pattern_13 0.0210398
Fosl1	Pattern Name Modisco Significance metacluster_1/pattern_13 0.000102665
Bach2	Pattern Name Modisco Significance metacluster_1/pattern_13 0.00415365
Bach1	Pattern Name Modisco Significance metacluster_1/pattern_13 0.010556600000000001
Nfe2l2	Pattern Name Modisco Significance metacluster_1/pattern_13 0.011975200000000002
Nfe2	Pattern Name Modisco Significance metacluster_1/pattern_13 0.0107285
Mafk	Pattern Name Modisco Significance metacluster_1/pattern_13 0.0504435
Mafa	Pattern Name Modisco Significance metacluster_1/pattern_13 0.0367039
Nfkb1	Pattern Name Modisco Significance metacluster_1/pattern_14 0.00024234700000000002
Nfkb2	Pattern Name Modisco Significance metacluster_1/pattern_14 0.00024234700000000002
Rela	Pattern Name Modisco Significance metacluster_1/pattern_14 0.00163224
Relb	Pattern Name Modisco Significance metacluster_1/pattern_14 0.00509326
Rel	Pattern Name Modisco Significance metacluster_1/pattern_14 0.00629576
Rfx3	Pattern Name Modisco Significance metacluster_1/pattern_15 0.053989999999999996 metacluster_1/pattern_18 0.000321015
Rfx2	Pattern Name Modisco Significance metacluster_1/pattern_15 1.6941e-08 metacluster_1/pattern_18 3.00763e-07
Rfx4	Pattern Name Modisco Significance metacluster_1/pattern_15 0.00036155800000000005 metacluster_1/pattern_18 0.015199299999999999
Rfx7	Pattern Name Modisco Significance metacluster_1/pattern_15 0.020274599999999997 metacluster_1/pattern_18 0.010609200000000001
Rfx6	Pattern Name Modisco Significance metacluster_1/pattern_15 0.0407533 metacluster_1/pattern_18 0.00168087
Mef2d	Pattern Name Modisco Significance metacluster_1/pattern_16 1.6204000000000001e-09
Mef2a	Pattern Name Modisco Significance metacluster_1/pattern_16 7.53842e-05
Mef2c	Pattern Name Modisco Significance metacluster_1/pattern_16 5.89954e-07
Zbtb33	Pattern Name Modisco Significance metacluster_1/pattern_17 0.000200552
Pou2f2	Pattern Name Modisco Significance metacluster_1/pattern_19 0.00554619
Pou5f1	Pattern Name Modisco Significance metacluster_1/pattern_19 0.00515387
Nanog	Pattern Name Modisco Significance metacluster_1/pattern_19 0.00203094
Sox2	Pattern Name Modisco Significance metacluster_1/pattern_19 0.00515387
Nfia	Pattern Name Modisco Significance metacluster_1/pattern_20 9.25559e-05
Nfib	Pattern Name Modisco Significance metacluster_1/pattern_20 0.0016856999999999998
Nfic	Pattern Name Modisco Significance metacluster_1/pattern_20 0.029805400000000003

display_paiwise_pattern_comparison(data_name, modisco_root, homer_root)

Number of CISBP TFs obtained by TF-MoDISco and Homer

Shared TFs between TF-MoDISco and Homer: #67

TF Name	Modisco	Homer
Irf4	Pattern Name Modisco Significance metacluster_1/pattern_0 0.0210068 metacluster_1/pattern_5 0.00949315	Pattern Name Homer Significance motif15.motif 0.0217172
Klf12	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00216563	Pattern Name Homer Significance motif3.motif 0.013142500000000001
Zbtb17	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00108514 metacluster_1/pattern_6 0.0129002	Pattern Name Homer Significance motif3.motif 0.0523964
Sp2	Pattern Name Modisco Significance metacluster_1/pattern_1 4.1266000000000005e-10 metacluster_1/pattern_6 6.62901e-05 metacluster_1/pattern_17 0.0006644660000000001	Pattern Name Homer Significance motif3.motif 0.00010862799999999999
Pbx3	Pattern Name Modisco Significance metacluster_1/pattern_4 0.000139405	Pattern Name Homer Significance motif8.motif 0.00035896800000000004
Irf9	Pattern Name Modisco Significance metacluster_1/pattern_5 0.00287636	Pattern Name Homer Significance motif15.motif 0.000578453
E2f4	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00045575300000000004	Pattern Name Homer Significance motif3.motif 0.00133389
Runx1	Pattern Name Modisco Significance metacluster_1/pattern_12 0.011014399999999999	Pattern Name Homer Significance motif14.motif 0.00254432
Klf3	Pattern Name Modisco Significance metacluster_1/pattern_1 2.57988e-07 metacluster_1/pattern_6 0.037925	Pattern Name Homer Significance motif3.motif 0.00048039599999999996
Etv3	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00212494	Pattern Name Homer Significance motif2.motif 0.00010067600000000001
Elf1	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00584666	Pattern Name Homer Significance motif2.motif 0.00735954
Tbx2	Pattern Name Modisco Significance metacluster_1/pattern_11 2.4300500000000003e-13	Pattern Name Homer Significance motif4.motif 0.00184609
Foxi1	Pattern Name Modisco Significance metacluster_1/pattern_4 6.24505e-06	Pattern Name Homer Significance motif8.motif 0.00031302900000000004
Irf8	Pattern Name Modisco Significance metacluster_1/pattern_0 0.018831599999999997 metacluster_1/pattern_5 9.56337e-07	Pattern Name Homer Significance motif15.motif 0.0217172
Elf3	Pattern Name Modisco Significance metacluster_1/pattern_0 0.0309611	Pattern Name Homer Significance motif2.motif 0.049245
Spdef	Pattern Name Modisco Significance metacluster_1/pattern_0 0.0359184	Pattern Name Homer Significance motif2.motif 0.00735954
Elf4	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00863218	Pattern Name Homer Significance motif2.motif 0.00328358
Klf7	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00105097	Pattern Name Homer Significance motif3.motif 0.000603665
Klf4	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00115294	Pattern Name Homer Significance motif3.motif 0.0563884
Zfx	Pattern Name Modisco Significance metacluster_1/pattern_6 0.00241876 metacluster_1/pattern_17 0.0225311	Pattern Name Homer Significance motif3.motif 0.056368499999999995
Cbfb	Pattern Name Modisco Significance metacluster_1/pattern_12 0.011014399999999999	Pattern Name Homer Significance motif14.motif 0.0334999
Ctcf	Pattern Name Modisco Significance metacluster_1/pattern_2 1.2173400000000002e-15	Pattern Name Homer Significance motif1.motif 9.22468e-06
Fev	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00106596	Pattern Name Homer Significance motif2.motif 0.00244782
Elk4	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00229605	Pattern Name Homer Significance motif2.motif 3.63e-06
Elf2	Pattern Name Modisco Significance metacluster_1/pattern_0 0.0146359	Pattern Name Homer Significance motif2.motif 0.03780019999999999
Egr2	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0443456 metacluster_1/pattern_6 0.049155199999999996	Pattern Name Homer Significance motif3.motif 0.0563884
XP_911724.4	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00212494	Pattern Name Homer Significance motif2.motif 0.000145637
Nfyc	Pattern Name Modisco Significance metacluster_1/pattern_4 5.584009999999999e-06	Pattern Name Homer Significance motif8.motif 2.40628e-06
Erg	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00195544	Pattern Name Homer Significance motif2.motif 1.0741800000000001e-05
Klf5	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00048243	Pattern Name Homer Significance motif3.motif 0.020310400000000003
Irf2	Pattern Name Modisco Significance metacluster_1/pattern_5 0.000489427	Pattern Name Homer Significance motif15.motif 0.00308992
Prdm1	Pattern Name Modisco Significance metacluster_1/pattern_5 4.94133e-05	Pattern Name Homer Significance motif15.motif 0.031430099999999996
Gabpa	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00212494	Pattern Name Homer Significance motif2.motif 0.00264979
Egr1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0243273	Pattern Name Homer Significance motif3.motif 0.017914799999999998
Irf7	Pattern Name Modisco Significance metacluster_1/pattern_5 7.40155e-05	Pattern Name Homer Significance motif15.motif 0.000469589
Ets1	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00195544 metacluster_1/pattern_8 0.0531414	Pattern Name Homer Significance motif2.motif 0.000120478
Nrf1	Pattern Name Modisco Significance metacluster_1/pattern_3 9.51627e-09	Pattern Name Homer Significance motif10.motif 9.60677e-07
E2f1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.012257200000000001	Pattern Name Homer Significance motif3.motif 0.0535778
Elk3	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00212494	Pattern Name Homer Significance motif2.motif 0.00030981
Sp1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00048243 metacluster_1/pattern_6 0.00038191699999999996 metacluster_1/pattern_17 0.00172723	Pattern Name Homer Significance motif3.motif 0.00724083
Sp3	Pattern Name Modisco Significance metacluster_1/pattern_1 4.80473e-09 metacluster_1/pattern_6 0.000711791 metacluster_1/pattern_17 0.00380792	Pattern Name Homer Significance motif3.motif 7.84313e-05
Ehf	Pattern Name Modisco Significance metacluster_1/pattern_0 0.0141068	Pattern Name Homer Significance motif2.motif 0.00328358
Fli1	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00195544	Pattern Name Homer Significance motif2.motif 1.77589e-05
Etv2	Pattern Name Modisco Significance metacluster_1/pattern_0 2.9743000000000003e-05	Pattern Name Homer Significance motif2.motif 0.00181574
Etv4	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00212494	Pattern Name Homer Significance motif2.motif 0.0033746
Runx2	Pattern Name Modisco Significance metacluster_1/pattern_12 0.011014399999999999	Pattern Name Homer Significance motif14.motif 0.00245048
Thap11	Pattern Name Modisco Significance metacluster_1/pattern_11 7.69068e-21	Pattern Name Homer Significance motif4.motif 0.00207599
Nfyb	Pattern Name Modisco Significance metacluster_1/pattern_4 1.59327e-09	Pattern Name Homer Significance motif8.motif 6.14084e-08
Elk1	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00229605	Pattern Name Homer Significance motif2.motif 0.000144707
Runx3	Pattern Name Modisco Significance metacluster_1/pattern_12 0.011014399999999999	Pattern Name Homer Significance motif14.motif 0.00531986
Stat2	Pattern Name Modisco Significance metacluster_1/pattern_5 0.0005959380000000001	Pattern Name Homer Significance motif15.motif 0.0217172
Klf8	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0016742	Pattern Name Homer Significance motif3.motif 0.00117696
Stat1	Pattern Name Modisco Significance metacluster_1/pattern_5 2.2365700000000002e-05	Pattern Name Homer Significance motif15.motif 0.0340211
Elf5	Pattern Name Modisco Significance metacluster_1/pattern_0 0.038533	Pattern Name Homer Significance motif2.motif 0.042767900000000005
Nfya	Pattern Name Modisco Significance metacluster_1/pattern_4 5.584009999999999e-06	Pattern Name Homer Significance motif8.motif 1.45619e-06
Etv6	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00167936	Pattern Name Homer Significance motif2.motif 0.00501152
Irf1	Pattern Name Modisco Significance metacluster_1/pattern_5 2.80296e-12	Pattern Name Homer Significance motif15.motif 0.00107898
Ctcfl	Pattern Name Modisco Significance metacluster_1/pattern_2 3.9009900000000004e-08	Pattern Name Homer Significance motif1.motif 0.000385839
Etv1	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00238849	Pattern Name Homer Significance motif2.motif 6.40925e-06
Sp4	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00161436	Pattern Name Homer Significance motif3.motif 0.0260834
Zfp143	Pattern Name Modisco Significance metacluster_1/pattern_11 6.234439999999999e-22	Pattern Name Homer Significance motif4.motif 0.00207599
Klf1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0292954	Pattern Name Homer Significance motif3.motif 0.056368499999999995
Etv5	Pattern Name Modisco Significance metacluster_1/pattern_0 0.0010062	Pattern Name Homer Significance motif2.motif 2.31427e-06
Yy1	Pattern Name Modisco Significance metacluster_1/pattern_6 1.1941700000000001e-05	Pattern Name Homer Significance motif19.motif 0.0229766
Klf6	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00032882699999999996	Pattern Name Homer Significance motif3.motif 0.00408996
Spic	Pattern Name Modisco Significance metacluster_1/pattern_0 0.024631999999999998	Pattern Name Homer Significance motif2.motif 0.033409100000000004
Irf3	Pattern Name Modisco Significance metacluster_1/pattern_5 0.0008224489999999999	Pattern Name Homer Significance motif15.motif 0.0475474

Unique TF-MoDISco TFs: #96

TF Name	Modisco	Homer
Usf1	Pattern Name Modisco Significance metacluster_1/pattern_9 0.011489	Absent
Nfia	Pattern Name Modisco Significance metacluster_1/pattern_20 9.25559e-05	Absent
Srebf2	Pattern Name Modisco Significance metacluster_1/pattern_1 0.024230200000000004 metacluster_1/pattern_9 0.0116917	Absent
Mitf	Pattern Name Modisco Significance metacluster_1/pattern_9 0.0005228769999999999	Absent
Mafb	Pattern Name Modisco Significance metacluster_1/pattern_7 0.03445619999999999	Absent
Zfp42	Pattern Name Modisco Significance metacluster_1/pattern_6 0.013542799999999999	Absent
Arntl	Pattern Name Modisco Significance metacluster_1/pattern_9 0.00878068	Absent
Bhlhe41	Pattern Name Modisco Significance metacluster_1/pattern_9 0.039495300000000004	Absent
Rfx2	Pattern Name Modisco Significance metacluster_1/pattern_15 1.6941e-08 metacluster_1/pattern_18 3.00763e-07	Absent
Zfp281	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0598529	Absent
Batf	Pattern Name Modisco Significance metacluster_1/pattern_13 0.0210398	Absent
Spib	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00369505 metacluster_1/pattern_5 0.00620244	Absent
Nfkb1	Pattern Name Modisco Significance metacluster_1/pattern_14 0.00024234700000000002	Absent
Atf2	Pattern Name Modisco Significance metacluster_1/pattern_7 0.00161582	Absent
Mlxip	Pattern Name Modisco Significance metacluster_1/pattern_9 0.0546009	Absent
Tfec	Pattern Name Modisco Significance metacluster_1/pattern_7 0.03445619999999999 metacluster_1/pattern_9 0.000277425	Absent
Junb	Pattern Name Modisco Significance metacluster_1/pattern_13 0.0451348	Absent
Jun	Pattern Name Modisco Significance metacluster_1/pattern_7 0.0534889 metacluster_1/pattern_13 4.07608e-05	Absent
Usf2	Pattern Name Modisco Significance metacluster_1/pattern_9 0.00188385 metacluster_1/pattern_17 0.013556499999999999	Absent
Mef2a	Pattern Name Modisco Significance metacluster_1/pattern_16 7.53842e-05	Absent
Atf1	Pattern Name Modisco Significance metacluster_1/pattern_7 0.012663899999999999 metacluster_1/pattern_9 0.038285599999999996	Absent
Rfx4	Pattern Name Modisco Significance metacluster_1/pattern_15 0.00036155800000000005 metacluster_1/pattern_18 0.015199299999999999	Absent
Arnt	Pattern Name Modisco Significance metacluster_1/pattern_9 0.00106335	Absent
Max	Pattern Name Modisco Significance metacluster_1/pattern_9 0.0479686	Absent
Wt1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00390006 metacluster_1/pattern_6 0.0461629	Absent
Stat3	Pattern Name Modisco Significance metacluster_1/pattern_0 0.0570761 metacluster_1/pattern_18 0.045381	Absent
Nfkb2	Pattern Name Modisco Significance metacluster_1/pattern_14 0.00024234700000000002	Absent
Bhlhe40	Pattern Name Modisco Significance metacluster_1/pattern_7 0.0534889 metacluster_1/pattern_9 0.03396969999999999	Absent
Tcf7	Pattern Name Modisco Significance metacluster_1/pattern_10 0.00712264	Absent
Pou5f1	Pattern Name Modisco Significance metacluster_1/pattern_19 0.00515387	Absent
Klf15	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0243273	Absent
Mlx	Pattern Name Modisco Significance metacluster_1/pattern_9 0.00232582	Absent
Nfic	Pattern Name Modisco Significance metacluster_1/pattern_20 0.029805400000000003	Absent
Tfe3	Pattern Name Modisco Significance metacluster_1/pattern_9 0.000277425	Absent
Rela	Pattern Name Modisco Significance metacluster_1/pattern_14 0.00163224	Absent
Dbp	Pattern Name Modisco Significance metacluster_1/pattern_7 0.0564569	Absent
Creb3l2	Pattern Name Modisco Significance metacluster_1/pattern_9 0.0156738	Absent
Fosl2	Pattern Name Modisco Significance metacluster_1/pattern_13 7.24748e-05	Absent
Nanog	Pattern Name Modisco Significance metacluster_1/pattern_19 0.00203094	Absent
Tcf7l2	Pattern Name Modisco Significance metacluster_1/pattern_10 0.00569957	Absent
Batf3	Pattern Name Modisco Significance metacluster_1/pattern_5 0.010251799999999998	Absent
Maz	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00687441 metacluster_1/pattern_6 0.043699	Absent
Rfx3	Pattern Name Modisco Significance metacluster_1/pattern_15 0.053989999999999996 metacluster_1/pattern_18 0.000321015	Absent
Tef	Pattern Name Modisco Significance metacluster_1/pattern_7 0.0386224	Absent
Sp5	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00108514	Absent
Rfx6	Pattern Name Modisco Significance metacluster_1/pattern_15 0.0407533 metacluster_1/pattern_18 0.00168087	Absent
Jdp2	Pattern Name Modisco Significance metacluster_1/pattern_7 0.00557895 metacluster_1/pattern_13 0.000267308	Absent
Taf1	Pattern Name Modisco Significance metacluster_1/pattern_6 6.2352899999999996e-06	Absent
Bach1	Pattern Name Modisco Significance metacluster_1/pattern_13 0.010556600000000001	Absent
Hlf	Pattern Name Modisco Significance metacluster_1/pattern_7 0.029432999999999997 metacluster_1/pattern_9 0.052936000000000004	Absent
Egr3	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0429811	Absent
Tcf7l1	Pattern Name Modisco Significance metacluster_1/pattern_10 0.000104381	Absent
Rarg	Pattern Name Modisco Significance metacluster_1/pattern_9 0.0550452	Absent
Clock	Pattern Name Modisco Significance metacluster_1/pattern_9 0.052936000000000004	Absent
Fosl1	Pattern Name Modisco Significance metacluster_1/pattern_13 0.000102665	Absent
Pou2f2	Pattern Name Modisco Significance metacluster_1/pattern_19 0.00554619	Absent
Rfx1	Pattern Name Modisco Significance metacluster_1/pattern_6 0.00634386 metacluster_1/pattern_15 2.51757e-07	Absent
Zbtb33	Pattern Name Modisco Significance metacluster_1/pattern_17 0.000200552	Absent
Mafa	Pattern Name Modisco Significance metacluster_1/pattern_13 0.0367039	Absent
Zscan10	Pattern Name Modisco Significance metacluster_1/pattern_0 0.037148400000000005	Absent
Crem	Pattern Name Modisco Significance metacluster_1/pattern_7 0.00608269	Absent
Mef2c	Pattern Name Modisco Significance metacluster_1/pattern_16 5.89954e-07	Absent
Mycn	Pattern Name Modisco Significance metacluster_1/pattern_9 0.038285599999999996	Absent
Creb5	Pattern Name Modisco Significance metacluster_1/pattern_7 0.00088554	Absent
Jund	Pattern Name Modisco Significance metacluster_1/pattern_13 0.0107285	Absent
Nfe2	Pattern Name Modisco Significance metacluster_1/pattern_13 0.0107285	Absent
Srebf1	Pattern Name Modisco Significance metacluster_1/pattern_7 0.0534889 metacluster_1/pattern_9 0.038285599999999996	Absent
Rfx7	Pattern Name Modisco Significance metacluster_1/pattern_15 0.020274599999999997 metacluster_1/pattern_18 0.010609200000000001	Absent
Fos	Pattern Name Modisco Significance metacluster_1/pattern_13 7.24748e-05	Absent
Npas2	Pattern Name Modisco Significance metacluster_1/pattern_9 0.00208366	Absent
Lef1	Pattern Name Modisco Significance metacluster_1/pattern_10 2.05222e-06	Absent
Mxi1	Pattern Name Modisco Significance metacluster_1/pattern_6 0.0421615	Absent
Creb1	Pattern Name Modisco Significance metacluster_1/pattern_7 0.00143418 metacluster_1/pattern_9 0.0353705	Absent
Mef2d	Pattern Name Modisco Significance metacluster_1/pattern_16 1.6204000000000001e-09	Absent
Bach2	Pattern Name Modisco Significance metacluster_1/pattern_13 0.00415365	Absent
Cebpa	Pattern Name Modisco Significance metacluster_1/pattern_7 0.0534889	Absent
Atf7	Pattern Name Modisco Significance metacluster_1/pattern_7 0.001425 metacluster_1/pattern_9 0.044610000000000004	Absent
Tcf3	Pattern Name Modisco Significance metacluster_1/pattern_10 0.000115503	Absent
Rel	Pattern Name Modisco Significance metacluster_1/pattern_14 0.00629576	Absent
Mafk	Pattern Name Modisco Significance metacluster_1/pattern_13 0.0504435	Absent
Myc	Pattern Name Modisco Significance metacluster_1/pattern_9 0.0126917	Absent
Rxrb	Pattern Name Modisco Significance metacluster_1/pattern_7 0.0247826	Absent
Tfeb	Pattern Name Modisco Significance metacluster_1/pattern_9 0.00022658900000000002	Absent
Atf3	Pattern Name Modisco Significance metacluster_1/pattern_7 0.0472255 metacluster_1/pattern_13 7.24748e-05	Absent
Tcfl5	Pattern Name Modisco Significance metacluster_1/pattern_9 0.014424000000000001	Absent
Xbp1	Pattern Name Modisco Significance metacluster_1/pattern_9 0.03396969999999999	Absent
Cebpb	Pattern Name Modisco Significance metacluster_1/pattern_7 0.055255099999999994	Absent
Nfe2l2	Pattern Name Modisco Significance metacluster_1/pattern_13 0.011975200000000002	Absent
Nfib	Pattern Name Modisco Significance metacluster_1/pattern_20 0.0016856999999999998	Absent
Fosb	Pattern Name Modisco Significance metacluster_1/pattern_13 7.24748e-05	Absent
Relb	Pattern Name Modisco Significance metacluster_1/pattern_14 0.00509326	Absent
Hes1	Pattern Name Modisco Significance metacluster_1/pattern_9 0.0566489	Absent
Sall4	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0243273	Absent
Sox2	Pattern Name Modisco Significance metacluster_1/pattern_19 0.00515387	Absent
Nfil3	Pattern Name Modisco Significance metacluster_1/pattern_7 0.0564569	Absent
Spi1	Pattern Name Modisco Significance metacluster_1/pattern_0 0.0478351	Absent

Unique Homer TFs: #4

TF Name	Modisco	Homer
Irf6	Absent	Pattern Name Homer Significance motif15.motif 0.0580731
Zbtb1	Absent	Pattern Name Homer Significance motif3.motif 0.0395073
Irf5	Absent	Pattern Name Homer Significance motif15.motif 0.034587099999999996
E2f7	Absent	Pattern Name Homer Significance motif3.motif 0.05575940000000001