In [1]:
# Parameters
data_name = "largeDPprecrsr;CD4+CD8+CD69-;A;CL"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
tomtom_report_root = "http://mitra.stanford.edu/kundaje/msharmin/report/tomtom_outs/cells"
task_dir = "task_32-naivegw"
perf_file = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/fineFactorized/task_32-naivegw/NaiveauPRC.txt"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
reportfile = "/mnt/lab_data/kundaje/msharmin/annotations/filtering samples_MS2.xlsx"
sheetname = "filter23"
In [2]:
from matlas.reports import display_metadata
load data from labcluster
Using TensorFlow backend.
2019-08-30 18:47:40,700 [WARNING] git-lfs not installed
In [3]:
display_metadata(data_name, perf_file, reportfile, sheetname)
    Sample Information
    MetaData NameDescription
    Cell typeCD4+CD8+ CD69lo large (DP precursors)
    Cell GroupT cells
    Experiment NameATAC
    Experiment GroupCasellas Lab
    Pipeline Output
    replicateNaïve overlap peaksIDR peaksTSS enrichment (< 8 is very poor <10 is low)Final number of unique mapping, dup-filtered, chrM filtered readsNumber of reads in called peak regionsFraction of reads in called peak regionsNumber of reads in promoter regionsFraction of reads in promoter regionsNumber of reads in enhancer regionsFraction of reads in enhancer regions
    rep195232751789.74746057914980721570.133364804030.107202502000.3344
    Modelling Metadata
    MetricValue
    auPRC0.6198
    Calibrated Recall at 50% FDR0.186
    Number of Positive Examples in Test Data74287
    Number of Negative Examples in Test Data7996564
    Imbalance Ratio in Test Data0.0092
    Test Chromosomeschr2, chr3, chr19
In [4]:
from matlas.reports import display_paiwise_pattern_comparison
from matlas.reports import display_denovo_patterns
In [5]:
display_denovo_patterns(data_name, modisco_root=modisco_root)
TF-MoDISco is using the TensorFlow backend.
The following two links show list of Denovo Patterns and corresponding Motifs discovered by TF-MoDISco
Click here for Denovo Patterns by TF-MoDISco: #22
Pattern NameTF Name(s)Modisco
metacluster_1/pattern_0 # seqlets: 5534 SequenceContrib ScoresHyp_Contrib Scores
Ctcf, Ctcfl
metacluster_1/pattern_1 # seqlets: 4266 SequenceContrib ScoresHyp_Contrib Scores
Ets1, Erg, Fli1, Elk1, Gabpa, Elk4, Etv4, Etv2, Elk3, Etv5,

Spi1, Fev, Etv6, Elf2, Etv1, Etv3, XP_911724.4, Elf1, Spib, Elf4, Ehf,

Elf5, Elf3, Irf8, Spdef, Spic, Irf4, Zscan10, Stat3
metacluster_1/pattern_2 # seqlets: 3209 SequenceContrib ScoresHyp_Contrib Scores
Sp2, Sp3, Klf3, Sp4, Sp1, Klf6, Wt1, Zfp281, Egr1, Klf1,

Sp5, Klf5, E2f4, Zbtb17, Maz, Klf4, Klf7, Klf15, Klf8, Klf12, Zfx,

Egr2, Ptf1a, E2f1, Sall4, E2f7, Srebf2
metacluster_1/pattern_3 # seqlets: 1499 SequenceContrib ScoresHyp_Contrib Scores
Nfyb, Nfyc, Nfya, Foxi1, Pbx3
metacluster_1/pattern_4 # seqlets: 1327 SequenceContrib ScoresHyp_Contrib Scores
Nrf1
metacluster_1/pattern_5 # seqlets: 877 SequenceContrib ScoresHyp_Contrib Scores
Tcf3, Myf6, Snai2, Tcf4, Ascl2, Tcf12, Ascl1, Tcf7l1, Myog, Myod1,

Snai1, Mnt, Nhlh2, Myf5, Hes5, Pknox2, Tal1, Bhlha15, Meis3, Meis2, Figla,

Nhlh1, Hey2
metacluster_1/pattern_6 # seqlets: 733 SequenceContrib ScoresHyp_Contrib Scores
Zfp143, Thap11, Tbx2
metacluster_1/pattern_7 # seqlets: 717 SequenceContrib ScoresHyp_Contrib Scores
Taf1, Yy1, Zfp42, Rfx1, Mxi1, Usf2
metacluster_1/pattern_8 # seqlets: 679 SequenceContrib ScoresHyp_Contrib Scores
Irf1, Irf2, Prdm1, Irf7, Stat1, Stat2, Irf9, Irf3
metacluster_1/pattern_9 # seqlets: 655 SequenceContrib ScoresHyp_Contrib Scores
Creb1, Atf2, Atf7, Atf1, Crem, Jdp2, Creb5, Atf3, Usf1, Fosl2,

Jun, Hlf, Nfil3
metacluster_1/pattern_10 # seqlets: 524 SequenceContrib ScoresHyp_Contrib Scores
Tfap2c, Nr1h4, Hes7, Tfap2a, Hes1
metacluster_1/pattern_11 # seqlets: 500 SequenceContrib ScoresHyp_Contrib Scores
Arntl, Tfeb, Tfe3, Tfec, Mitf, Clock, Bhlhe40, Srebf1, Arnt, Npas2,

Mlx, Tcfl5, Mycn, Creb3l2, Max, Myc, Bhlhe41, Xbp1
metacluster_1/pattern_12 # seqlets: 376 SequenceContrib ScoresHyp_Contrib Scores
metacluster_1/pattern_13 # seqlets: 294 SequenceContrib ScoresHyp_Contrib Scores
Zbtb33
metacluster_1/pattern_14 # seqlets: 267 SequenceContrib ScoresHyp_Contrib Scores
Runx1, Runx2, Runx3, Cbfb
metacluster_1/pattern_15 # seqlets: 247 SequenceContrib ScoresHyp_Contrib Scores
metacluster_1/pattern_16 # seqlets: 236 SequenceContrib ScoresHyp_Contrib Scores
Rfx2, Rfx3, Rfx4, Rfx7, Rfx6
metacluster_1/pattern_17 # seqlets: 165 SequenceContrib ScoresHyp_Contrib Scores
Tcf7l2, Lef1, Tcf7, Nr2f6
metacluster_1/pattern_18 # seqlets: 130 SequenceContrib ScoresHyp_Contrib Scores
metacluster_1/pattern_19 # seqlets: 106 SequenceContrib ScoresHyp_Contrib Scores
Ets2, Rela
metacluster_1/pattern_20 # seqlets: 46 SequenceContrib ScoresHyp_Contrib Scores
metacluster_1/pattern_21 # seqlets: 50 SequenceContrib ScoresHyp_Contrib Scores
Click here for Motifs by TF-MoDISco: #156
TF NamePattern(s)
Ctcf
Pattern NameModiscoSignificance
metacluster_1/pattern_01.06156e-13
metacluster_1/pattern_180.0006568780000000001
metacluster_1/pattern_200.0407616
Ctcfl
Pattern NameModiscoSignificance
metacluster_1/pattern_07.122839999999999e-08
metacluster_1/pattern_100.0555045
metacluster_1/pattern_150.00902908
metacluster_1/pattern_160.0569899
metacluster_1/pattern_180.000273208
metacluster_1/pattern_200.00594445
metacluster_1/pattern_210.03290030000000001
Ets1
Pattern NameModiscoSignificance
metacluster_1/pattern_10.00110662
metacluster_1/pattern_190.010213799999999999
Erg
Pattern NameModiscoSignificance
metacluster_1/pattern_10.00110662
metacluster_1/pattern_190.016160499999999998
Fli1
Pattern NameModiscoSignificance
metacluster_1/pattern_10.00110662
metacluster_1/pattern_190.031894
Elk1
Pattern NameModiscoSignificance
metacluster_1/pattern_10.0011397
Gabpa
Pattern NameModiscoSignificance
metacluster_1/pattern_10.0011397
Elk4
Pattern NameModiscoSignificance
metacluster_1/pattern_10.00120143
metacluster_1/pattern_190.0462871
Etv4
Pattern NameModiscoSignificance
metacluster_1/pattern_10.00114145
Etv2
Pattern NameModiscoSignificance
metacluster_1/pattern_17.07601e-05
metacluster_1/pattern_190.00354026
Elk3
Pattern NameModiscoSignificance
metacluster_1/pattern_10.00110662
Etv5
Pattern NameModiscoSignificance
metacluster_1/pattern_10.00047712
Spi1
Pattern NameModiscoSignificance
metacluster_1/pattern_10.0507485
metacluster_1/pattern_80.051330499999999994
Fev
Pattern NameModiscoSignificance
metacluster_1/pattern_10.000783518
Etv6
Pattern NameModiscoSignificance
metacluster_1/pattern_10.00110662
metacluster_1/pattern_190.025752299999999995
Elf2
Pattern NameModiscoSignificance
metacluster_1/pattern_10.00832125
metacluster_1/pattern_190.0218795
Etv1
Pattern NameModiscoSignificance
metacluster_1/pattern_10.00120143
Etv3
Pattern NameModiscoSignificance
metacluster_1/pattern_10.00114145
XP_911724.4
Pattern NameModiscoSignificance
metacluster_1/pattern_10.00120143
Elf1
Pattern NameModiscoSignificance
metacluster_1/pattern_10.002206
Spib
Pattern NameModiscoSignificance
metacluster_1/pattern_10.00468326
metacluster_1/pattern_80.0592571
Elf4
Pattern NameModiscoSignificance
metacluster_1/pattern_10.00503207
Ehf
Pattern NameModiscoSignificance
metacluster_1/pattern_10.00707061
metacluster_1/pattern_190.0370568
Elf5
Pattern NameModiscoSignificance
metacluster_1/pattern_10.0278599
metacluster_1/pattern_190.00354026
Elf3
Pattern NameModiscoSignificance
metacluster_1/pattern_10.020929800000000002
metacluster_1/pattern_190.0370568
Irf8
Pattern NameModiscoSignificance
metacluster_1/pattern_10.020929800000000002
metacluster_1/pattern_83.1856700000000003e-06
Spdef
Pattern NameModiscoSignificance
metacluster_1/pattern_10.020929800000000002
Spic
Pattern NameModiscoSignificance
metacluster_1/pattern_10.0214343
Irf4
Pattern NameModiscoSignificance
metacluster_1/pattern_10.0237125
metacluster_1/pattern_80.010063500000000001
Zscan10
Pattern NameModiscoSignificance
metacluster_1/pattern_10.0409028
Stat3
Pattern NameModiscoSignificance
metacluster_1/pattern_10.0546962
Sp2
Pattern NameModiscoSignificance
metacluster_1/pattern_21.56722e-17
metacluster_1/pattern_70.000143733
metacluster_1/pattern_90.00294825
metacluster_1/pattern_100.000485633
metacluster_1/pattern_156.28892e-05
metacluster_1/pattern_161.45275e-05
metacluster_1/pattern_187.1795600000000004e-06
metacluster_1/pattern_200.000923419
metacluster_1/pattern_210.000151165
Sp3
Pattern NameModiscoSignificance
metacluster_1/pattern_28.91865e-13
metacluster_1/pattern_70.0007575860000000001
metacluster_1/pattern_90.026700900000000003
metacluster_1/pattern_100.000485633
metacluster_1/pattern_150.00034865
metacluster_1/pattern_162.96777e-05
metacluster_1/pattern_180.000370011
metacluster_1/pattern_200.00253809
metacluster_1/pattern_210.000151165
Klf3
Pattern NameModiscoSignificance
metacluster_1/pattern_21.1484e-09
metacluster_1/pattern_70.042317400000000005
metacluster_1/pattern_100.004784
metacluster_1/pattern_150.00663977
metacluster_1/pattern_160.00555517
metacluster_1/pattern_180.0016722999999999998
metacluster_1/pattern_200.028748900000000004
metacluster_1/pattern_210.000871389
Sp4
Pattern NameModiscoSignificance
metacluster_1/pattern_20.0016937
metacluster_1/pattern_70.04154480000000001
metacluster_1/pattern_100.0107453
metacluster_1/pattern_180.0599423
metacluster_1/pattern_190.0370568
Sp1
Pattern NameModiscoSignificance
metacluster_1/pattern_20.000597057
metacluster_1/pattern_70.000309722
metacluster_1/pattern_90.0173549
metacluster_1/pattern_100.00210406
metacluster_1/pattern_150.000258917
metacluster_1/pattern_160.00328115
metacluster_1/pattern_180.000370011
metacluster_1/pattern_190.0370568
metacluster_1/pattern_200.00253809
metacluster_1/pattern_210.00043590800000000004
Klf6
Pattern NameModiscoSignificance
metacluster_1/pattern_21.53188e-07
metacluster_1/pattern_100.00189568
metacluster_1/pattern_150.0416227
metacluster_1/pattern_180.0599423
Wt1
Pattern NameModiscoSignificance
metacluster_1/pattern_23.69421e-05
metacluster_1/pattern_70.03545
metacluster_1/pattern_100.0104774
metacluster_1/pattern_160.0220389
metacluster_1/pattern_180.0527701
metacluster_1/pattern_200.0483653
Zfp281
Pattern NameModiscoSignificance
metacluster_1/pattern_20.000185032
metacluster_1/pattern_100.0146037
Egr1
Pattern NameModiscoSignificance
metacluster_1/pattern_20.00555334
metacluster_1/pattern_100.0555045
metacluster_1/pattern_200.0483653
Klf1
Pattern NameModiscoSignificance
metacluster_1/pattern_20.00014136700000000002
metacluster_1/pattern_100.022337
Sp5
Pattern NameModiscoSignificance
metacluster_1/pattern_20.00014136700000000002
metacluster_1/pattern_100.0227067
Klf5
Pattern NameModiscoSignificance
metacluster_1/pattern_20.000185032
E2f4
Pattern NameModiscoSignificance
metacluster_1/pattern_20.000233122
metacluster_1/pattern_100.00791634
Zbtb17
Pattern NameModiscoSignificance
metacluster_1/pattern_20.000233122
metacluster_1/pattern_70.018326
metacluster_1/pattern_100.00848837
metacluster_1/pattern_150.00663977
metacluster_1/pattern_160.0162231
metacluster_1/pattern_180.0527701
Maz
Pattern NameModiscoSignificance
metacluster_1/pattern_20.000394866
metacluster_1/pattern_70.0592364
metacluster_1/pattern_100.00660714
metacluster_1/pattern_190.0370568
Klf4
Pattern NameModiscoSignificance
metacluster_1/pattern_20.00305527
metacluster_1/pattern_100.00390607
Klf7
Pattern NameModiscoSignificance
metacluster_1/pattern_20.0016937
metacluster_1/pattern_100.00105621
Klf15
Pattern NameModiscoSignificance
metacluster_1/pattern_20.00199213
metacluster_1/pattern_100.00219452
Klf8
Pattern NameModiscoSignificance
metacluster_1/pattern_20.00317262
metacluster_1/pattern_100.00189568
Klf12
Pattern NameModiscoSignificance
metacluster_1/pattern_20.00457656
metacluster_1/pattern_100.0227067
Zfx
Pattern NameModiscoSignificance
metacluster_1/pattern_20.00555334
metacluster_1/pattern_40.025225099999999997
metacluster_1/pattern_70.00226392
metacluster_1/pattern_90.00830258
metacluster_1/pattern_100.010742
metacluster_1/pattern_150.0466995
metacluster_1/pattern_160.0288834
metacluster_1/pattern_180.035498199999999994
metacluster_1/pattern_200.0196384
metacluster_1/pattern_210.021467
Egr2
Pattern NameModiscoSignificance
metacluster_1/pattern_20.00459913
metacluster_1/pattern_100.00646019
Ptf1a
Pattern NameModiscoSignificance
metacluster_1/pattern_20.0235995
metacluster_1/pattern_50.0192541
E2f1
Pattern NameModiscoSignificance
metacluster_1/pattern_20.032938
Sall4
Pattern NameModiscoSignificance
metacluster_1/pattern_20.0409485
E2f7
Pattern NameModiscoSignificance
metacluster_1/pattern_20.044650300000000004
Srebf2
Pattern NameModiscoSignificance
metacluster_1/pattern_20.053337699999999995
metacluster_1/pattern_110.00988629
Nfyb
Pattern NameModiscoSignificance
metacluster_1/pattern_31.3053600000000001e-10
Nfyc
Pattern NameModiscoSignificance
metacluster_1/pattern_35.2774000000000005e-06
Nfya
Pattern NameModiscoSignificance
metacluster_1/pattern_35.67374e-06
Foxi1
Pattern NameModiscoSignificance
metacluster_1/pattern_35.67374e-06
Pbx3
Pattern NameModiscoSignificance
metacluster_1/pattern_37.15863e-05
Nrf1
Pattern NameModiscoSignificance
metacluster_1/pattern_44.2681199999999994e-07
Tcf3
Pattern NameModiscoSignificance
metacluster_1/pattern_50.00113839
metacluster_1/pattern_177.22877e-05
Myf6
Pattern NameModiscoSignificance
metacluster_1/pattern_50.012180400000000001
Snai2
Pattern NameModiscoSignificance
metacluster_1/pattern_50.0005369369999999999
Tcf4
Pattern NameModiscoSignificance
metacluster_1/pattern_50.00104629
Ascl2
Pattern NameModiscoSignificance
metacluster_1/pattern_50.00219487
Tcf12
Pattern NameModiscoSignificance
metacluster_1/pattern_50.0106137
Ascl1
Pattern NameModiscoSignificance
metacluster_1/pattern_50.0037844000000000003
Tcf7l1
Pattern NameModiscoSignificance
metacluster_1/pattern_50.00569669
metacluster_1/pattern_178.784629999999999e-05
Myog
Pattern NameModiscoSignificance
metacluster_1/pattern_50.030566500000000003
Myod1
Pattern NameModiscoSignificance
metacluster_1/pattern_50.00766891
Snai1
Pattern NameModiscoSignificance
metacluster_1/pattern_50.0106137
Mnt
Pattern NameModiscoSignificance
metacluster_1/pattern_50.012180400000000001
Nhlh2
Pattern NameModiscoSignificance
metacluster_1/pattern_50.014357299999999998
Myf5
Pattern NameModiscoSignificance
metacluster_1/pattern_50.0192541
Hes5
Pattern NameModiscoSignificance
metacluster_1/pattern_50.0192541
Pknox2
Pattern NameModiscoSignificance
metacluster_1/pattern_50.0209517
Tal1
Pattern NameModiscoSignificance
metacluster_1/pattern_50.0212349
Bhlha15
Pattern NameModiscoSignificance
metacluster_1/pattern_50.0212349
Meis3
Pattern NameModiscoSignificance
metacluster_1/pattern_50.024035900000000002
Meis2
Pattern NameModiscoSignificance
metacluster_1/pattern_50.0248231
Figla
Pattern NameModiscoSignificance
metacluster_1/pattern_50.025838599999999996
Nhlh1
Pattern NameModiscoSignificance
metacluster_1/pattern_50.029512599999999996
metacluster_1/pattern_180.0599423
metacluster_1/pattern_200.0588131
Hey2
Pattern NameModiscoSignificance
metacluster_1/pattern_50.035233999999999994
Zfp143
Pattern NameModiscoSignificance
metacluster_1/pattern_65.738010000000001e-21
Thap11
Pattern NameModiscoSignificance
metacluster_1/pattern_62.06738e-20
Tbx2
Pattern NameModiscoSignificance
metacluster_1/pattern_63.27149e-13
Taf1
Pattern NameModiscoSignificance
metacluster_1/pattern_73.03438e-06
Yy1
Pattern NameModiscoSignificance
metacluster_1/pattern_79.40002e-06
Zfp42
Pattern NameModiscoSignificance
metacluster_1/pattern_70.013854499999999999
Rfx1
Pattern NameModiscoSignificance
metacluster_1/pattern_70.0202472
metacluster_1/pattern_90.0339664
metacluster_1/pattern_100.0227067
metacluster_1/pattern_150.0296034
metacluster_1/pattern_162.91713e-11
metacluster_1/pattern_180.0527701
Mxi1
Pattern NameModiscoSignificance
metacluster_1/pattern_70.0595759
metacluster_1/pattern_100.0227067
metacluster_1/pattern_150.00666078
metacluster_1/pattern_180.037135400000000006
metacluster_1/pattern_200.0588131
Usf2
Pattern NameModiscoSignificance
metacluster_1/pattern_70.0595759
metacluster_1/pattern_93.26997e-05
metacluster_1/pattern_100.0104774
metacluster_1/pattern_110.00725542
metacluster_1/pattern_150.042812
metacluster_1/pattern_160.010519200000000001
metacluster_1/pattern_180.005742000000000001
metacluster_1/pattern_200.00594445
metacluster_1/pattern_210.03290030000000001
Irf1
Pattern NameModiscoSignificance
metacluster_1/pattern_87.74674e-14
Irf2
Pattern NameModiscoSignificance
metacluster_1/pattern_80.00078487
Prdm1
Pattern NameModiscoSignificance
metacluster_1/pattern_81.26921e-05
Irf7
Pattern NameModiscoSignificance
metacluster_1/pattern_82.45616e-05
Stat1
Pattern NameModiscoSignificance
metacluster_1/pattern_88.208299999999999e-05
Stat2
Pattern NameModiscoSignificance
metacluster_1/pattern_80.0005728619999999999
Irf9
Pattern NameModiscoSignificance
metacluster_1/pattern_80.0008994589999999999
Irf3
Pattern NameModiscoSignificance
metacluster_1/pattern_80.00408043
Creb1
Pattern NameModiscoSignificance
metacluster_1/pattern_90.00258748
metacluster_1/pattern_110.0376151
Atf2
Pattern NameModiscoSignificance
metacluster_1/pattern_90.00237416
metacluster_1/pattern_110.0327458
Atf7
Pattern NameModiscoSignificance
metacluster_1/pattern_90.000752298
metacluster_1/pattern_110.0197027
Atf1
Pattern NameModiscoSignificance
metacluster_1/pattern_90.0173549
metacluster_1/pattern_110.0398103
Crem
Pattern NameModiscoSignificance
metacluster_1/pattern_90.0133321
Jdp2
Pattern NameModiscoSignificance
metacluster_1/pattern_90.00101092
metacluster_1/pattern_110.0478545
Creb5
Pattern NameModiscoSignificance
metacluster_1/pattern_90.00232203
Atf3
Pattern NameModiscoSignificance
metacluster_1/pattern_90.012006900000000001
Usf1
Pattern NameModiscoSignificance
metacluster_1/pattern_90.012006900000000001
metacluster_1/pattern_110.0228388
Fosl2
Pattern NameModiscoSignificance
metacluster_1/pattern_90.012624
Jun
Pattern NameModiscoSignificance
metacluster_1/pattern_90.030933999999999996
Hlf
Pattern NameModiscoSignificance
metacluster_1/pattern_90.04170019999999999
metacluster_1/pattern_110.0458834
Nfil3
Pattern NameModiscoSignificance
metacluster_1/pattern_90.0524024
Tfap2c
Pattern NameModiscoSignificance
metacluster_1/pattern_100.032749099999999996
Nr1h4
Pattern NameModiscoSignificance
metacluster_1/pattern_100.011100299999999999
Hes7
Pattern NameModiscoSignificance
metacluster_1/pattern_100.0232373
Tfap2a
Pattern NameModiscoSignificance
metacluster_1/pattern_100.0232373
Hes1
Pattern NameModiscoSignificance
metacluster_1/pattern_100.025034599999999997
Arntl
Pattern NameModiscoSignificance
metacluster_1/pattern_110.00619045
Tfeb
Pattern NameModiscoSignificance
metacluster_1/pattern_110.000558795
Tfe3
Pattern NameModiscoSignificance
metacluster_1/pattern_110.00134502
Tfec
Pattern NameModiscoSignificance
metacluster_1/pattern_110.00150703
Mitf
Pattern NameModiscoSignificance
metacluster_1/pattern_110.000697206
Clock
Pattern NameModiscoSignificance
metacluster_1/pattern_110.0130656
Bhlhe40
Pattern NameModiscoSignificance
metacluster_1/pattern_110.0228388
Srebf1
Pattern NameModiscoSignificance
metacluster_1/pattern_110.0109986
Arnt
Pattern NameModiscoSignificance
metacluster_1/pattern_110.058651699999999994
Npas2
Pattern NameModiscoSignificance
metacluster_1/pattern_110.00268397
Mlx
Pattern NameModiscoSignificance
metacluster_1/pattern_110.00942512
Tcfl5
Pattern NameModiscoSignificance
metacluster_1/pattern_110.0148947
Mycn
Pattern NameModiscoSignificance
metacluster_1/pattern_110.0148947
Creb3l2
Pattern NameModiscoSignificance
metacluster_1/pattern_110.0530031
Max
Pattern NameModiscoSignificance
metacluster_1/pattern_110.022162400000000002
Myc
Pattern NameModiscoSignificance
metacluster_1/pattern_110.028471299999999998
metacluster_1/pattern_180.0599423
Bhlhe41
Pattern NameModiscoSignificance
metacluster_1/pattern_110.0398103
Xbp1
Pattern NameModiscoSignificance
metacluster_1/pattern_110.052635
Zbtb33
Pattern NameModiscoSignificance
metacluster_1/pattern_134.05614e-05
Runx1
Pattern NameModiscoSignificance
metacluster_1/pattern_140.00658817
Runx2
Pattern NameModiscoSignificance
metacluster_1/pattern_140.010580899999999999
Runx3
Pattern NameModiscoSignificance
metacluster_1/pattern_140.010580899999999999
Cbfb
Pattern NameModiscoSignificance
metacluster_1/pattern_140.010580899999999999
Rfx2
Pattern NameModiscoSignificance
metacluster_1/pattern_160.015733
Rfx3
Pattern NameModiscoSignificance
metacluster_1/pattern_160.000503212
Rfx4
Pattern NameModiscoSignificance
metacluster_1/pattern_166.79115e-05
Rfx7
Pattern NameModiscoSignificance
metacluster_1/pattern_160.000503212
Rfx6
Pattern NameModiscoSignificance
metacluster_1/pattern_160.000994355
Tcf7l2
Pattern NameModiscoSignificance
metacluster_1/pattern_173.4727e-05
Lef1
Pattern NameModiscoSignificance
metacluster_1/pattern_174.43717e-08
Tcf7
Pattern NameModiscoSignificance
metacluster_1/pattern_170.0121018
Nr2f6
Pattern NameModiscoSignificance
metacluster_1/pattern_170.0256502
Ets2
Pattern NameModiscoSignificance
metacluster_1/pattern_190.016160499999999998
Rela
Pattern NameModiscoSignificance
metacluster_1/pattern_190.0370568
In [6]:
display_paiwise_pattern_comparison(data_name, modisco_root, homer_root)
Number of CISBP TFs obtained by TF-MoDISco and Homer
Shared TFs between TF-MoDISco and Homer: #65
TF NameModiscoHomer
Spi1
Pattern NameModiscoSignificance
metacluster_1/pattern_10.0507485
metacluster_1/pattern_80.051330499999999994
Pattern NameHomerSignificance
motif2.motif0.038066300000000004
Nfyb
Pattern NameModiscoSignificance
metacluster_1/pattern_31.3053600000000001e-10
Pattern NameHomerSignificance
motif7.motif0.0219982
Fli1
Pattern NameModiscoSignificance
metacluster_1/pattern_10.00110662
metacluster_1/pattern_190.031894
Pattern NameHomerSignificance
motif2.motif0.00304677
Elk1
Pattern NameModiscoSignificance
metacluster_1/pattern_10.0011397
Pattern NameHomerSignificance
motif2.motif0.0004988659999999999
Spdef
Pattern NameModiscoSignificance
metacluster_1/pattern_10.020929800000000002
Pattern NameHomerSignificance
motif2.motif0.0225794
Zbtb33
Pattern NameModiscoSignificance
metacluster_1/pattern_134.05614e-05
Pattern NameHomerSignificance
motif12.motif0.0008330060000000001
Etv4
Pattern NameModiscoSignificance
metacluster_1/pattern_10.00114145
Pattern NameHomerSignificance
motif2.motif0.00387272
Meis2
Pattern NameModiscoSignificance
metacluster_1/pattern_50.0248231
Pattern NameHomerSignificance
motif18.motif0.0588486
XP_911724.4
Pattern NameModiscoSignificance
metacluster_1/pattern_10.00120143
Pattern NameHomerSignificance
motif2.motif0.00011254
Klf4
Pattern NameModiscoSignificance
metacluster_1/pattern_20.00305527
metacluster_1/pattern_100.00390607
Pattern NameHomerSignificance
motif3.motif0.00217689
Etv1
Pattern NameModiscoSignificance
metacluster_1/pattern_10.00120143
Pattern NameHomerSignificance
motif2.motif0.000135213
Nfyc
Pattern NameModiscoSignificance
metacluster_1/pattern_35.2774000000000005e-06
Pattern NameHomerSignificance
motif7.motif0.0378284
Zfx
Pattern NameModiscoSignificance
metacluster_1/pattern_20.00555334
metacluster_1/pattern_40.025225099999999997
metacluster_1/pattern_70.00226392
metacluster_1/pattern_90.00830258
metacluster_1/pattern_100.010742
metacluster_1/pattern_150.0466995
metacluster_1/pattern_160.0288834
metacluster_1/pattern_180.035498199999999994
metacluster_1/pattern_200.0196384
metacluster_1/pattern_210.021467
Pattern NameHomerSignificance
motif3.motif0.0309099
Elk3
Pattern NameModiscoSignificance
metacluster_1/pattern_10.00110662
Pattern NameHomerSignificance
motif2.motif0.00032020700000000003
Myod1
Pattern NameModiscoSignificance
metacluster_1/pattern_50.00766891
Pattern NameHomerSignificance
motif18.motif0.0588486
Tcf4
Pattern NameModiscoSignificance
metacluster_1/pattern_50.00104629
Pattern NameHomerSignificance
motif18.motif0.027719099999999997
Klf6
Pattern NameModiscoSignificance
metacluster_1/pattern_21.53188e-07
metacluster_1/pattern_100.00189568
metacluster_1/pattern_150.0416227
metacluster_1/pattern_180.0599423
Pattern NameHomerSignificance
motif3.motif0.00235872
Hey2
Pattern NameModiscoSignificance
metacluster_1/pattern_50.035233999999999994
Pattern NameHomerSignificance
motif18.motif0.0420829
Snai2
Pattern NameModiscoSignificance
metacluster_1/pattern_50.0005369369999999999
Pattern NameHomerSignificance
motif18.motif0.0420829
Elf2
Pattern NameModiscoSignificance
metacluster_1/pattern_10.00832125
metacluster_1/pattern_190.0218795
Pattern NameHomerSignificance
motif2.motif0.0272274
Snai1
Pattern NameModiscoSignificance
metacluster_1/pattern_50.0106137
Pattern NameHomerSignificance
motif1.motif0.0565764
motif18.motif0.0454624
Irf4
Pattern NameModiscoSignificance
metacluster_1/pattern_10.0237125
metacluster_1/pattern_80.010063500000000001
Pattern NameHomerSignificance
motif2.motif0.0542485
Ctcfl
Pattern NameModiscoSignificance
metacluster_1/pattern_07.122839999999999e-08
metacluster_1/pattern_100.0555045
metacluster_1/pattern_150.00902908
metacluster_1/pattern_160.0569899
metacluster_1/pattern_180.000273208
metacluster_1/pattern_200.00594445
metacluster_1/pattern_210.03290030000000001
Pattern NameHomerSignificance
motif1.motif0.000205214
Elf4
Pattern NameModiscoSignificance
metacluster_1/pattern_10.00503207
Pattern NameHomerSignificance
motif2.motif0.00014772600000000002
Ehf
Pattern NameModiscoSignificance
metacluster_1/pattern_10.00707061
metacluster_1/pattern_190.0370568
Pattern NameHomerSignificance
motif2.motif0.026417799999999998
Tcf3
Pattern NameModiscoSignificance
metacluster_1/pattern_50.00113839
metacluster_1/pattern_177.22877e-05
Pattern NameHomerSignificance
motif18.motif0.0420829
Sp1
Pattern NameModiscoSignificance
metacluster_1/pattern_20.000597057
metacluster_1/pattern_70.000309722
metacluster_1/pattern_90.0173549
metacluster_1/pattern_100.00210406
metacluster_1/pattern_150.000258917
metacluster_1/pattern_160.00328115
metacluster_1/pattern_180.000370011
metacluster_1/pattern_190.0370568
metacluster_1/pattern_200.00253809
metacluster_1/pattern_210.00043590800000000004
Pattern NameHomerSignificance
motif3.motif0.00742237
Ascl2
Pattern NameModiscoSignificance
metacluster_1/pattern_50.00219487
Pattern NameHomerSignificance
motif18.motif0.0415592
Klf3
Pattern NameModiscoSignificance
metacluster_1/pattern_21.1484e-09
metacluster_1/pattern_70.042317400000000005
metacluster_1/pattern_100.004784
metacluster_1/pattern_150.00663977
metacluster_1/pattern_160.00555517
metacluster_1/pattern_180.0016722999999999998
metacluster_1/pattern_200.028748900000000004
metacluster_1/pattern_210.000871389
Pattern NameHomerSignificance
motif3.motif0.00118858
Sp2
Pattern NameModiscoSignificance
metacluster_1/pattern_21.56722e-17
metacluster_1/pattern_70.000143733
metacluster_1/pattern_90.00294825
metacluster_1/pattern_100.000485633
metacluster_1/pattern_156.28892e-05
metacluster_1/pattern_161.45275e-05
metacluster_1/pattern_187.1795600000000004e-06
metacluster_1/pattern_200.000923419
metacluster_1/pattern_210.000151165
Pattern NameHomerSignificance
motif3.motif0.000762054
Klf1
Pattern NameModiscoSignificance
metacluster_1/pattern_20.00014136700000000002
metacluster_1/pattern_100.022337
Pattern NameHomerSignificance
motif3.motif0.031027999999999997
Etv6
Pattern NameModiscoSignificance
metacluster_1/pattern_10.00110662
metacluster_1/pattern_190.025752299999999995
Pattern NameHomerSignificance
motif2.motif0.00765892
Ctcf
Pattern NameModiscoSignificance
metacluster_1/pattern_01.06156e-13
metacluster_1/pattern_180.0006568780000000001
metacluster_1/pattern_200.0407616
Pattern NameHomerSignificance
motif1.motif3.3849199999999997e-06
Elf5
Pattern NameModiscoSignificance
metacluster_1/pattern_10.0278599
metacluster_1/pattern_190.00354026
Pattern NameHomerSignificance
motif2.motif0.00562573
Spib
Pattern NameModiscoSignificance
metacluster_1/pattern_10.00468326
metacluster_1/pattern_80.0592571
Pattern NameHomerSignificance
motif2.motif0.038025
Nfya
Pattern NameModiscoSignificance
metacluster_1/pattern_35.67374e-06
Pattern NameHomerSignificance
motif7.motif0.0378284
Nrf1
Pattern NameModiscoSignificance
metacluster_1/pattern_44.2681199999999994e-07
Pattern NameHomerSignificance
motif9.motif0.00140156
Pknox2
Pattern NameModiscoSignificance
metacluster_1/pattern_50.0209517
Pattern NameHomerSignificance
motif18.motif0.0588486
Tcf7l1
Pattern NameModiscoSignificance
metacluster_1/pattern_50.00569669
metacluster_1/pattern_178.784629999999999e-05
Pattern NameHomerSignificance
motif18.motif0.027719099999999997
Sp4
Pattern NameModiscoSignificance
metacluster_1/pattern_20.0016937
metacluster_1/pattern_70.04154480000000001
metacluster_1/pattern_100.0107453
metacluster_1/pattern_180.0599423
metacluster_1/pattern_190.0370568
Pattern NameHomerSignificance
motif3.motif0.032973199999999994
Myog
Pattern NameModiscoSignificance
metacluster_1/pattern_50.030566500000000003
Pattern NameHomerSignificance
motif18.motif0.0542178
Klf12
Pattern NameModiscoSignificance
metacluster_1/pattern_20.00457656
metacluster_1/pattern_100.0227067
Pattern NameHomerSignificance
motif3.motif0.0591611
Tbx2
Pattern NameModiscoSignificance
metacluster_1/pattern_63.27149e-13
Pattern NameHomerSignificance
motif5.motif0.000108202
Erg
Pattern NameModiscoSignificance
metacluster_1/pattern_10.00110662
metacluster_1/pattern_190.016160499999999998
Pattern NameHomerSignificance
motif2.motif0.00081162
Klf7
Pattern NameModiscoSignificance
metacluster_1/pattern_20.0016937
metacluster_1/pattern_100.00105621
Pattern NameHomerSignificance
motif3.motif0.00150983
Nhlh2
Pattern NameModiscoSignificance
metacluster_1/pattern_50.014357299999999998
Pattern NameHomerSignificance
motif18.motif0.0420829
Thap11
Pattern NameModiscoSignificance
metacluster_1/pattern_62.06738e-20
Pattern NameHomerSignificance
motif5.motif4.03049e-06
Sp3
Pattern NameModiscoSignificance
metacluster_1/pattern_28.91865e-13
metacluster_1/pattern_70.0007575860000000001
metacluster_1/pattern_90.026700900000000003
metacluster_1/pattern_100.000485633
metacluster_1/pattern_150.00034865
metacluster_1/pattern_162.96777e-05
metacluster_1/pattern_180.000370011
metacluster_1/pattern_200.00253809
metacluster_1/pattern_210.000151165
Pattern NameHomerSignificance
motif3.motif0.00123674
Myf6
Pattern NameModiscoSignificance
metacluster_1/pattern_50.012180400000000001
Pattern NameHomerSignificance
motif18.motif0.021333
Tcf12
Pattern NameModiscoSignificance
metacluster_1/pattern_50.0106137
Pattern NameHomerSignificance
motif18.motif0.0420829
Elf3
Pattern NameModiscoSignificance
metacluster_1/pattern_10.020929800000000002
metacluster_1/pattern_190.0370568
Pattern NameHomerSignificance
motif2.motif0.00578812
Gabpa
Pattern NameModiscoSignificance
metacluster_1/pattern_10.0011397
Pattern NameHomerSignificance
motif2.motif0.00770226
Elf1
Pattern NameModiscoSignificance
metacluster_1/pattern_10.002206
Pattern NameHomerSignificance
motif2.motif0.00120248
E2f4
Pattern NameModiscoSignificance
metacluster_1/pattern_20.000233122
metacluster_1/pattern_100.00791634
Pattern NameHomerSignificance
motif3.motif0.000762054
Etv2
Pattern NameModiscoSignificance
metacluster_1/pattern_17.07601e-05
metacluster_1/pattern_190.00354026
Pattern NameHomerSignificance
motif2.motif0.00387272
Klf5
Pattern NameModiscoSignificance
metacluster_1/pattern_20.000185032
Pattern NameHomerSignificance
motif3.motif0.032828300000000005
Egr1
Pattern NameModiscoSignificance
metacluster_1/pattern_20.00555334
metacluster_1/pattern_100.0555045
metacluster_1/pattern_200.0483653
Pattern NameHomerSignificance
motif3.motif0.032378
Ets1
Pattern NameModiscoSignificance
metacluster_1/pattern_10.00110662
metacluster_1/pattern_190.010213799999999999
Pattern NameHomerSignificance
motif2.motif0.00120248
Elk4
Pattern NameModiscoSignificance
metacluster_1/pattern_10.00120143
metacluster_1/pattern_190.0462871
Pattern NameHomerSignificance
motif2.motif0.00081162
Spic
Pattern NameModiscoSignificance
metacluster_1/pattern_10.0214343
Pattern NameHomerSignificance
motif2.motif0.019873599999999998
Zfp143
Pattern NameModiscoSignificance
metacluster_1/pattern_65.738010000000001e-21
Pattern NameHomerSignificance
motif5.motif1.04078e-05
Fev
Pattern NameModiscoSignificance
metacluster_1/pattern_10.000783518
Pattern NameHomerSignificance
motif2.motif0.026165800000000003
Klf8
Pattern NameModiscoSignificance
metacluster_1/pattern_20.00317262
metacluster_1/pattern_100.00189568
Pattern NameHomerSignificance
motif3.motif0.00228452
motif21.motif0.0238938
Etv5
Pattern NameModiscoSignificance
metacluster_1/pattern_10.00047712
Pattern NameHomerSignificance
motif2.motif7.50945e-05
Etv3
Pattern NameModiscoSignificance
metacluster_1/pattern_10.00114145
Pattern NameHomerSignificance
motif2.motif0.00011254
Unique TF-MoDISco TFs: #91
TF NameModiscoHomer
Irf3
Pattern NameModiscoSignificance
metacluster_1/pattern_80.00408043
Absent
Rfx6
Pattern NameModiscoSignificance
metacluster_1/pattern_160.000994355
Absent
Tcfl5
Pattern NameModiscoSignificance
metacluster_1/pattern_110.0148947
Absent
Bhlhe41
Pattern NameModiscoSignificance
metacluster_1/pattern_110.0398103
Absent
Hes7
Pattern NameModiscoSignificance
metacluster_1/pattern_100.0232373
Absent
Nr1h4
Pattern NameModiscoSignificance
metacluster_1/pattern_100.011100299999999999
Absent
Wt1
Pattern NameModiscoSignificance
metacluster_1/pattern_23.69421e-05
metacluster_1/pattern_70.03545
metacluster_1/pattern_100.0104774
metacluster_1/pattern_160.0220389
metacluster_1/pattern_180.0527701
metacluster_1/pattern_200.0483653
Absent
Figla
Pattern NameModiscoSignificance
metacluster_1/pattern_50.025838599999999996
Absent
Runx2
Pattern NameModiscoSignificance
metacluster_1/pattern_140.010580899999999999
Absent
Maz
Pattern NameModiscoSignificance
metacluster_1/pattern_20.000394866
metacluster_1/pattern_70.0592364
metacluster_1/pattern_100.00660714
metacluster_1/pattern_190.0370568
Absent
Mlx
Pattern NameModiscoSignificance
metacluster_1/pattern_110.00942512
Absent
Rfx2
Pattern NameModiscoSignificance
metacluster_1/pattern_160.015733
Absent
Klf15
Pattern NameModiscoSignificance
metacluster_1/pattern_20.00199213
metacluster_1/pattern_100.00219452
Absent
Irf2
Pattern NameModiscoSignificance
metacluster_1/pattern_80.00078487
Absent
Irf1
Pattern NameModiscoSignificance
metacluster_1/pattern_87.74674e-14
Absent
Meis3
Pattern NameModiscoSignificance
metacluster_1/pattern_50.024035900000000002
Absent
Srebf1
Pattern NameModiscoSignificance
metacluster_1/pattern_110.0109986
Absent
Stat1
Pattern NameModiscoSignificance
metacluster_1/pattern_88.208299999999999e-05
Absent
Nfil3
Pattern NameModiscoSignificance
metacluster_1/pattern_90.0524024
Absent
Tfap2a
Pattern NameModiscoSignificance
metacluster_1/pattern_100.0232373
Absent
Crem
Pattern NameModiscoSignificance
metacluster_1/pattern_90.0133321
Absent
Runx3
Pattern NameModiscoSignificance
metacluster_1/pattern_140.010580899999999999
Absent
E2f7
Pattern NameModiscoSignificance
metacluster_1/pattern_20.044650300000000004
Absent
Irf7
Pattern NameModiscoSignificance
metacluster_1/pattern_82.45616e-05
Absent
Mnt
Pattern NameModiscoSignificance
metacluster_1/pattern_50.012180400000000001
Absent
Atf1
Pattern NameModiscoSignificance
metacluster_1/pattern_90.0173549
metacluster_1/pattern_110.0398103
Absent
Sall4
Pattern NameModiscoSignificance
metacluster_1/pattern_20.0409485
Absent
Rfx3
Pattern NameModiscoSignificance
metacluster_1/pattern_160.000503212
Absent
Mxi1
Pattern NameModiscoSignificance
metacluster_1/pattern_70.0595759
metacluster_1/pattern_100.0227067
metacluster_1/pattern_150.00666078
metacluster_1/pattern_180.037135400000000006
metacluster_1/pattern_200.0588131
Absent
Nhlh1
Pattern NameModiscoSignificance
metacluster_1/pattern_50.029512599999999996
metacluster_1/pattern_180.0599423
metacluster_1/pattern_200.0588131
Absent
Creb5
Pattern NameModiscoSignificance
metacluster_1/pattern_90.00232203
Absent
Nr2f6
Pattern NameModiscoSignificance
metacluster_1/pattern_170.0256502
Absent
Rfx1
Pattern NameModiscoSignificance
metacluster_1/pattern_70.0202472
metacluster_1/pattern_90.0339664
metacluster_1/pattern_100.0227067
metacluster_1/pattern_150.0296034
metacluster_1/pattern_162.91713e-11
metacluster_1/pattern_180.0527701
Absent
Tfe3
Pattern NameModiscoSignificance
metacluster_1/pattern_110.00134502
Absent
Usf2
Pattern NameModiscoSignificance
metacluster_1/pattern_70.0595759
metacluster_1/pattern_93.26997e-05
metacluster_1/pattern_100.0104774
metacluster_1/pattern_110.00725542
metacluster_1/pattern_150.042812
metacluster_1/pattern_160.010519200000000001
metacluster_1/pattern_180.005742000000000001
metacluster_1/pattern_200.00594445
metacluster_1/pattern_210.03290030000000001
Absent
E2f1
Pattern NameModiscoSignificance
metacluster_1/pattern_20.032938
Absent
Fosl2
Pattern NameModiscoSignificance
metacluster_1/pattern_90.012624
Absent
Tcf7
Pattern NameModiscoSignificance
metacluster_1/pattern_170.0121018
Absent
Xbp1
Pattern NameModiscoSignificance
metacluster_1/pattern_110.052635
Absent
Lef1
Pattern NameModiscoSignificance
metacluster_1/pattern_174.43717e-08
Absent
Arnt
Pattern NameModiscoSignificance
metacluster_1/pattern_110.058651699999999994
Absent
Creb3l2
Pattern NameModiscoSignificance
metacluster_1/pattern_110.0530031
Absent
Zscan10
Pattern NameModiscoSignificance
metacluster_1/pattern_10.0409028
Absent
Zfp281
Pattern NameModiscoSignificance
metacluster_1/pattern_20.000185032
metacluster_1/pattern_100.0146037
Absent
Yy1
Pattern NameModiscoSignificance
metacluster_1/pattern_79.40002e-06
Absent
Cbfb
Pattern NameModiscoSignificance
metacluster_1/pattern_140.010580899999999999
Absent
Zfp42
Pattern NameModiscoSignificance
metacluster_1/pattern_70.013854499999999999
Absent
Stat2
Pattern NameModiscoSignificance
metacluster_1/pattern_80.0005728619999999999
Absent
Tcf7l2
Pattern NameModiscoSignificance
metacluster_1/pattern_173.4727e-05
Absent
Max
Pattern NameModiscoSignificance
metacluster_1/pattern_110.022162400000000002
Absent
Hes5
Pattern NameModiscoSignificance
metacluster_1/pattern_50.0192541
Absent
Creb1
Pattern NameModiscoSignificance
metacluster_1/pattern_90.00258748
metacluster_1/pattern_110.0376151
Absent
Myc
Pattern NameModiscoSignificance
metacluster_1/pattern_110.028471299999999998
metacluster_1/pattern_180.0599423
Absent
Mycn
Pattern NameModiscoSignificance
metacluster_1/pattern_110.0148947
Absent
Runx1
Pattern NameModiscoSignificance
metacluster_1/pattern_140.00658817
Absent
Pbx3
Pattern NameModiscoSignificance
metacluster_1/pattern_37.15863e-05
Absent
Atf2
Pattern NameModiscoSignificance
metacluster_1/pattern_90.00237416
metacluster_1/pattern_110.0327458
Absent
Bhlha15
Pattern NameModiscoSignificance
metacluster_1/pattern_50.0212349
Absent
Hlf
Pattern NameModiscoSignificance
metacluster_1/pattern_90.04170019999999999
metacluster_1/pattern_110.0458834
Absent
Zbtb17
Pattern NameModiscoSignificance
metacluster_1/pattern_20.000233122
metacluster_1/pattern_70.018326
metacluster_1/pattern_100.00848837
metacluster_1/pattern_150.00663977
metacluster_1/pattern_160.0162231
metacluster_1/pattern_180.0527701
Absent
Irf8
Pattern NameModiscoSignificance
metacluster_1/pattern_10.020929800000000002
metacluster_1/pattern_83.1856700000000003e-06
Absent
Usf1
Pattern NameModiscoSignificance
metacluster_1/pattern_90.012006900000000001
metacluster_1/pattern_110.0228388
Absent
Jun
Pattern NameModiscoSignificance
metacluster_1/pattern_90.030933999999999996
Absent
Srebf2
Pattern NameModiscoSignificance
metacluster_1/pattern_20.053337699999999995
metacluster_1/pattern_110.00988629
Absent
Prdm1
Pattern NameModiscoSignificance
metacluster_1/pattern_81.26921e-05
Absent
Bhlhe40
Pattern NameModiscoSignificance
metacluster_1/pattern_110.0228388
Absent
Stat3
Pattern NameModiscoSignificance
metacluster_1/pattern_10.0546962
Absent
Ets2
Pattern NameModiscoSignificance
metacluster_1/pattern_190.016160499999999998
Absent
Tfeb
Pattern NameModiscoSignificance
metacluster_1/pattern_110.000558795
Absent
Rela
Pattern NameModiscoSignificance
metacluster_1/pattern_190.0370568
Absent
Atf7
Pattern NameModiscoSignificance
metacluster_1/pattern_90.000752298
metacluster_1/pattern_110.0197027
Absent
Mitf
Pattern NameModiscoSignificance
metacluster_1/pattern_110.000697206
Absent
Irf9
Pattern NameModiscoSignificance
metacluster_1/pattern_80.0008994589999999999
Absent
Tfec
Pattern NameModiscoSignificance
metacluster_1/pattern_110.00150703
Absent
Atf3
Pattern NameModiscoSignificance
metacluster_1/pattern_90.012006900000000001
Absent
Hes1
Pattern NameModiscoSignificance
metacluster_1/pattern_100.025034599999999997
Absent
Arntl
Pattern NameModiscoSignificance
metacluster_1/pattern_110.00619045
Absent
Myf5
Pattern NameModiscoSignificance
metacluster_1/pattern_50.0192541
Absent
Ascl1
Pattern NameModiscoSignificance
metacluster_1/pattern_50.0037844000000000003
Absent
Npas2
Pattern NameModiscoSignificance
metacluster_1/pattern_110.00268397
Absent
Rfx4
Pattern NameModiscoSignificance
metacluster_1/pattern_166.79115e-05
Absent
Ptf1a
Pattern NameModiscoSignificance
metacluster_1/pattern_20.0235995
metacluster_1/pattern_50.0192541
Absent
Taf1
Pattern NameModiscoSignificance
metacluster_1/pattern_73.03438e-06
Absent
Rfx7
Pattern NameModiscoSignificance
metacluster_1/pattern_160.000503212
Absent
Tal1
Pattern NameModiscoSignificance
metacluster_1/pattern_50.0212349
Absent
Foxi1
Pattern NameModiscoSignificance
metacluster_1/pattern_35.67374e-06
Absent
Jdp2
Pattern NameModiscoSignificance
metacluster_1/pattern_90.00101092
metacluster_1/pattern_110.0478545
Absent
Sp5
Pattern NameModiscoSignificance
metacluster_1/pattern_20.00014136700000000002
metacluster_1/pattern_100.0227067
Absent
Clock
Pattern NameModiscoSignificance
metacluster_1/pattern_110.0130656
Absent
Tfap2c
Pattern NameModiscoSignificance
metacluster_1/pattern_100.032749099999999996
Absent
Egr2
Pattern NameModiscoSignificance
metacluster_1/pattern_20.00459913
metacluster_1/pattern_100.00646019
Absent
Unique Homer TFs: #5
TF NameModiscoHomer
Irf5Absent
Pattern NameHomerSignificance
motif2.motif0.038025
Zbtb1Absent
Pattern NameHomerSignificance
motif3.motif0.0591611
MlxipAbsent
Pattern NameHomerSignificance
motif18.motif0.0420829
Zic2Absent
Pattern NameHomerSignificance
motif1.motif0.0565764
Zic3Absent
Pattern NameHomerSignificance
motif1.motif0.0565764