# Parameters
data_name = "wES;GRM;E16.5;A;GEO"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
tomtom_report_root = "http://mitra.stanford.edu/kundaje/msharmin/report/tomtom_outs/cells"
task_dir = "task_179-naivegw"
perf_file = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/fineFactorized/task_179-naivegw/NaiveauPRC.txt"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
reportfile = "/mnt/lab_data/kundaje/msharmin/annotations/filtering samples_MS2.xlsx"
sheetname = "filter23"

from matlas.reports import display_metadata

load data from labcluster

Using TensorFlow backend.
2019-08-30 19:21:06,412 [WARNING] git-lfs not installed

display_metadata(data_name, perf_file, reportfile, sheetname)

Sample Information

MetaData Name	Description
Cell type	E16.5 sorted germ cells(wt)
Cell Group	ES cells and embryonic tissues
Experiment Name	ATAC
Experiment Group	GEO

Pipeline Output

replicate	Naïve overlap peaks	IDR peaks	TSS enrichment (< 8 is very poor <10 is low)	Final number of unique mapping, dup-filtered, chrM filtered reads	Number of reads in called peak regions	Fraction of reads in called peak regions	Number of reads in promoter regions	Fraction of reads in promoter regions	Number of reads in enhancer regions	Fraction of reads in enhancer regions
rep1	209073	119719	7.2165	90508387	10187316	0.1126	5138199	0.0568	28688474	0.317

Modelling Metadata

Metric	Value
auPRC	0.4588
Calibrated Recall at 50% FDR	0.343
Number of Positive Examples in Test Data	80019
Number of Negative Examples in Test Data	7990832
Imbalance Ratio in Test Data	0.0099
Test Chromosomes	chr2, chr3, chr19

from matlas.reports import display_paiwise_pattern_comparison
from matlas.reports import display_denovo_patterns

display_denovo_patterns(data_name, modisco_root=modisco_root)

TF-MoDISco is using the TensorFlow backend.

The following two links show list of Denovo Patterns and corresponding Motifs discovered by TF-MoDISco

Click here for Denovo Patterns by TF-MoDISco: #34

Pattern Name	TF Name(s)	Modisco
metacluster_0/pattern_0 # seqlets: 1784 SequenceContrib ScoresHyp_Contrib Scores	Sp4, Sp3, Sp2, Sp1, Klf3, Klf6, E2f4, Egr1, Sp5, Klf4, Zbtb17, Klf7, Klf8, Klf1, Egr2, Klf12, Zfp281, Wt1, Nhlh1, Ptf1a, Klf15, Klf5
metacluster_0/pattern_1 # seqlets: 1525 SequenceContrib ScoresHyp_Contrib Scores	Nfyb, Nfyc, Nfya, Foxi1, Pbx3
metacluster_0/pattern_2 # seqlets: 1481 SequenceContrib ScoresHyp_Contrib Scores	Maz, Ctcfl, Zfx, Mxi1, Zfp740, E2f1, Rela, Sall4, Fli1, Zbtb1, Srebf2, Gata1, Egr3
metacluster_0/pattern_3 # seqlets: 1366 SequenceContrib ScoresHyp_Contrib Scores	Nrf1, Usf2, Rfx1
metacluster_0/pattern_4 # seqlets: 1002 SequenceContrib ScoresHyp_Contrib Scores	Myc
metacluster_0/pattern_5 # seqlets: 869 SequenceContrib ScoresHyp_Contrib Scores
metacluster_0/pattern_6 # seqlets: 618 SequenceContrib ScoresHyp_Contrib Scores	Ctcf
metacluster_0/pattern_7 # seqlets: 610 SequenceContrib ScoresHyp_Contrib Scores	Gabpa, Elf1, Elk1, Ets1, Elk4, Erg, Elk3, Etv2, Etv1, Etv4, Etv5, Elf4, Ehf, Elf2, Elf5, Etv3, Etv6, XP_911724.4, Elf3, Fev, Spdef, Spi1
metacluster_0/pattern_8 # seqlets: 550 SequenceContrib ScoresHyp_Contrib Scores	Rfx6
metacluster_0/pattern_9 # seqlets: 430 SequenceContrib ScoresHyp_Contrib Scores	Usf1, Tfeb, Tfe3, Tfec, Arntl, Mitf, Srebf1, Bhlhe40, Clock, Arnt, Mlx, Mycn, Npas2, Tcfl5, Atf7, Atf2, Max, Creb3l2, Creb1, Rxrg, Bhlhe41, Atf1
metacluster_0/pattern_10 # seqlets: 346 SequenceContrib ScoresHyp_Contrib Scores	Rfx3, Rfx2, Rfx4, Rfx7, Hic1
metacluster_0/pattern_11 # seqlets: 321 SequenceContrib ScoresHyp_Contrib Scores	Thap11, Zfp143, Tbx2
metacluster_0/pattern_12 # seqlets: 279 SequenceContrib ScoresHyp_Contrib Scores	Zbtb33
metacluster_0/pattern_13 # seqlets: 277 SequenceContrib ScoresHyp_Contrib Scores	Crem, Jdp2, Creb5, Atf3, Fosl2, Jun
metacluster_0/pattern_14 # seqlets: 205 SequenceContrib ScoresHyp_Contrib Scores
metacluster_0/pattern_15 # seqlets: 197 SequenceContrib ScoresHyp_Contrib Scores	Yy1, Taf1, Zfp42
metacluster_0/pattern_16 # seqlets: 138 SequenceContrib ScoresHyp_Contrib Scores
metacluster_0/pattern_17 # seqlets: 129 SequenceContrib ScoresHyp_Contrib Scores
metacluster_0/pattern_18 # seqlets: 118 SequenceContrib ScoresHyp_Contrib Scores
metacluster_0/pattern_19 # seqlets: 114 SequenceContrib ScoresHyp_Contrib Scores
metacluster_0/pattern_20 # seqlets: 91 SequenceContrib ScoresHyp_Contrib Scores
metacluster_0/pattern_21 # seqlets: 77 SequenceContrib ScoresHyp_Contrib Scores
metacluster_0/pattern_22 # seqlets: 75 SequenceContrib ScoresHyp_Contrib Scores
metacluster_0/pattern_23 # seqlets: 88 SequenceContrib ScoresHyp_Contrib Scores
metacluster_0/pattern_24 # seqlets: 63 SequenceContrib ScoresHyp_Contrib Scores	Gli3, Bcl6, Gli2, Gli1
metacluster_0/pattern_25 # seqlets: 81 SequenceContrib ScoresHyp_Contrib Scores
metacluster_0/pattern_26 # seqlets: 50 SequenceContrib ScoresHyp_Contrib Scores	Vdr
metacluster_0/pattern_27 # seqlets: 46 SequenceContrib ScoresHyp_Contrib Scores
metacluster_0/pattern_28 # seqlets: 45 SequenceContrib ScoresHyp_Contrib Scores
metacluster_0/pattern_29 # seqlets: 41 SequenceContrib ScoresHyp_Contrib Scores
metacluster_0/pattern_30 # seqlets: 38 SequenceContrib ScoresHyp_Contrib Scores
metacluster_0/pattern_31 # seqlets: 36 SequenceContrib ScoresHyp_Contrib Scores
metacluster_0/pattern_32 # seqlets: 47 SequenceContrib ScoresHyp_Contrib Scores
metacluster_0/pattern_33 # seqlets: 55 SequenceContrib ScoresHyp_Contrib Scores

Click here for Motifs by TF-MoDISco: #113

TF Name	Pattern(s)
Sp4	Pattern Name Modisco Significance metacluster_0/pattern_0 0.0162657 metacluster_0/pattern_2 0.0007349289999999999 metacluster_0/pattern_5 0.028930900000000002
Sp3	Pattern Name Modisco Significance metacluster_0/pattern_0 0.000300454 metacluster_0/pattern_2 1.7552900000000003e-06 metacluster_0/pattern_3 0.00455855 metacluster_0/pattern_4 0.00122553 metacluster_0/pattern_5 3.27006e-07 metacluster_0/pattern_13 0.0157173 metacluster_0/pattern_15 0.0009649319999999999
Sp2	Pattern Name Modisco Significance metacluster_0/pattern_0 0.000300454 metacluster_0/pattern_2 5.781929999999999e-07 metacluster_0/pattern_3 6.82156e-05 metacluster_0/pattern_4 0.000108648 metacluster_0/pattern_5 3.4816199999999996e-08 metacluster_0/pattern_9 0.052478 metacluster_0/pattern_12 0.029388099999999997 metacluster_0/pattern_13 0.00156417 metacluster_0/pattern_15 5.0538e-05 metacluster_0/pattern_24 0.0374209
Sp1	Pattern Name Modisco Significance metacluster_0/pattern_0 0.0123929 metacluster_0/pattern_2 3.57105e-05 metacluster_0/pattern_3 0.0053234 metacluster_0/pattern_4 0.00122553 metacluster_0/pattern_5 7.111960000000001e-07 metacluster_0/pattern_13 0.013886700000000002 metacluster_0/pattern_15 0.00139077 metacluster_0/pattern_24 0.0143806
Klf3	Pattern Name Modisco Significance metacluster_0/pattern_0 0.0005005459999999999 metacluster_0/pattern_2 1.3721600000000001e-05 metacluster_0/pattern_3 0.020687599999999997 metacluster_0/pattern_4 0.044097199999999996 metacluster_0/pattern_5 1.1359200000000001e-05 metacluster_0/pattern_15 0.0179894 metacluster_0/pattern_24 0.0386126
Klf6	Pattern Name Modisco Significance metacluster_0/pattern_0 0.00558393 metacluster_0/pattern_2 0.00125238 metacluster_0/pattern_5 0.00249864
E2f4	Pattern Name Modisco Significance metacluster_0/pattern_0 0.00642519 metacluster_0/pattern_2 0.000629446
Egr1	Pattern Name Modisco Significance metacluster_0/pattern_0 0.00832272 metacluster_0/pattern_2 0.054707000000000006
Sp5	Pattern Name Modisco Significance metacluster_0/pattern_0 0.00758559 metacluster_0/pattern_2 6.7288e-08 metacluster_0/pattern_5 0.028205 metacluster_0/pattern_24 0.00685763
Klf4	Pattern Name Modisco Significance metacluster_0/pattern_0 0.057483900000000004 metacluster_0/pattern_2 9.67711e-05
Zbtb17	Pattern Name Modisco Significance metacluster_0/pattern_0 0.00889918 metacluster_0/pattern_2 3.86123e-05 metacluster_0/pattern_5 0.00249864 metacluster_0/pattern_15 0.0210949
Klf7	Pattern Name Modisco Significance metacluster_0/pattern_0 0.00889918 metacluster_0/pattern_2 8.060390000000001e-05
Klf8	Pattern Name Modisco Significance metacluster_0/pattern_0 0.010162000000000001 metacluster_0/pattern_2 0.00011768899999999999
Klf1	Pattern Name Modisco Significance metacluster_0/pattern_0 0.010442 metacluster_0/pattern_2 0.0232201 metacluster_0/pattern_5 0.0194038
Egr2	Pattern Name Modisco Significance metacluster_0/pattern_0 0.0123929 metacluster_0/pattern_2 0.0378904
Klf12	Pattern Name Modisco Significance metacluster_0/pattern_0 0.0142852 metacluster_0/pattern_2 0.054707000000000006
Zfp281	Pattern Name Modisco Significance metacluster_0/pattern_0 0.0256848 metacluster_0/pattern_2 0.054707000000000006
Wt1	Pattern Name Modisco Significance metacluster_0/pattern_0 0.0294013 metacluster_0/pattern_2 4.85499e-06 metacluster_0/pattern_5 0.00952482 metacluster_0/pattern_24 0.0182506
Nhlh1	Pattern Name Modisco Significance metacluster_0/pattern_0 0.0330249
Ptf1a	Pattern Name Modisco Significance metacluster_0/pattern_0 0.0465073
Klf15	Pattern Name Modisco Significance metacluster_0/pattern_0 0.0544414 metacluster_0/pattern_2 9.27409e-05 metacluster_0/pattern_5 0.00529472 metacluster_0/pattern_24 0.0143806
Klf5	Pattern Name Modisco Significance metacluster_0/pattern_0 0.0554235 metacluster_0/pattern_2 8.44641e-05 metacluster_0/pattern_5 0.00272083
Nfyb	Pattern Name Modisco Significance metacluster_0/pattern_1 2.67768e-12
Nfyc	Pattern Name Modisco Significance metacluster_0/pattern_1 4.37495e-11
Nfya	Pattern Name Modisco Significance metacluster_0/pattern_1 9.17273e-10
Foxi1	Pattern Name Modisco Significance metacluster_0/pattern_1 7.698569999999999e-07
Pbx3	Pattern Name Modisco Significance metacluster_0/pattern_1 4.82216e-06
Maz	Pattern Name Modisco Significance metacluster_0/pattern_2 1.3721600000000001e-05 metacluster_0/pattern_5 0.036313599999999994 metacluster_0/pattern_24 0.00685763
Ctcfl	Pattern Name Modisco Significance metacluster_0/pattern_2 0.004996899999999999 metacluster_0/pattern_4 0.0282392 metacluster_0/pattern_5 0.00688997 metacluster_0/pattern_6 9.14213e-11
Zfx	Pattern Name Modisco Significance metacluster_0/pattern_2 0.00622289 metacluster_0/pattern_3 0.0150977 metacluster_0/pattern_4 0.054464599999999995 metacluster_0/pattern_5 0.0399588 metacluster_0/pattern_9 0.0241766 metacluster_0/pattern_12 0.029388099999999997 metacluster_0/pattern_13 0.0294083 metacluster_0/pattern_15 0.00667203
Mxi1	Pattern Name Modisco Significance metacluster_0/pattern_2 0.0250623 metacluster_0/pattern_3 0.0229395 metacluster_0/pattern_4 0.016470699999999998 metacluster_0/pattern_5 0.00688997 metacluster_0/pattern_9 0.00134195
Zfp740	Pattern Name Modisco Significance metacluster_0/pattern_2 0.0284186
E2f1	Pattern Name Modisco Significance metacluster_0/pattern_2 0.0370556
Rela	Pattern Name Modisco Significance metacluster_0/pattern_2 0.0440615 metacluster_0/pattern_24 0.0386126
Sall4	Pattern Name Modisco Significance metacluster_0/pattern_2 0.045513599999999994
Fli1	Pattern Name Modisco Significance metacluster_0/pattern_2 0.0466469 metacluster_0/pattern_7 0.00066518
Zbtb1	Pattern Name Modisco Significance metacluster_0/pattern_2 0.0471364
Srebf2	Pattern Name Modisco Significance metacluster_0/pattern_2 0.054707000000000006 metacluster_0/pattern_9 0.00699862 metacluster_0/pattern_13 0.0531284
Gata1	Pattern Name Modisco Significance metacluster_0/pattern_2 0.054707000000000006
Egr3	Pattern Name Modisco Significance metacluster_0/pattern_2 0.0575059
Nrf1	Pattern Name Modisco Significance metacluster_0/pattern_3 7.40317e-06
Usf2	Pattern Name Modisco Significance metacluster_0/pattern_3 0.0324387 metacluster_0/pattern_4 0.00446319 metacluster_0/pattern_5 0.00250827 metacluster_0/pattern_9 0.00789368 metacluster_0/pattern_12 0.0432525 metacluster_0/pattern_13 3.8158200000000003e-05
Rfx1	Pattern Name Modisco Significance metacluster_0/pattern_3 0.0474479 metacluster_0/pattern_4 0.024781400000000002 metacluster_0/pattern_5 0.00688997 metacluster_0/pattern_9 0.051167800000000006 metacluster_0/pattern_10 1.70573e-09 metacluster_0/pattern_13 0.052003999999999995
Myc	Pattern Name Modisco Significance metacluster_0/pattern_4 0.0485087 metacluster_0/pattern_9 0.0503272
Ctcf	Pattern Name Modisco Significance metacluster_0/pattern_6 2.09801e-08
Gabpa	Pattern Name Modisco Significance metacluster_0/pattern_7 0.000555453
Elf1	Pattern Name Modisco Significance metacluster_0/pattern_7 1.41306e-06
Elk1	Pattern Name Modisco Significance metacluster_0/pattern_7 0.000225181
Ets1	Pattern Name Modisco Significance metacluster_0/pattern_7 0.00066518
Elk4	Pattern Name Modisco Significance metacluster_0/pattern_7 0.000555453
Erg	Pattern Name Modisco Significance metacluster_0/pattern_7 0.000589553
Elk3	Pattern Name Modisco Significance metacluster_0/pattern_7 0.000271044
Etv2	Pattern Name Modisco Significance metacluster_0/pattern_7 0.000555453
Etv1	Pattern Name Modisco Significance metacluster_0/pattern_7 0.000567755
Etv4	Pattern Name Modisco Significance metacluster_0/pattern_7 0.00967032
Etv5	Pattern Name Modisco Significance metacluster_0/pattern_7 0.000567755
Elf4	Pattern Name Modisco Significance metacluster_0/pattern_7 0.000589553
Ehf	Pattern Name Modisco Significance metacluster_0/pattern_7 0.00398763
Elf2	Pattern Name Modisco Significance metacluster_0/pattern_7 0.00113604
Elf5	Pattern Name Modisco Significance metacluster_0/pattern_7 0.013831200000000002
Etv3	Pattern Name Modisco Significance metacluster_0/pattern_7 0.00155166
Etv6	Pattern Name Modisco Significance metacluster_0/pattern_7 0.0488648
XP_911724.4	Pattern Name Modisco Significance metacluster_0/pattern_7 0.00185989
Elf3	Pattern Name Modisco Significance metacluster_0/pattern_7 0.0229012
Fev	Pattern Name Modisco Significance metacluster_0/pattern_7 0.00500539
Spdef	Pattern Name Modisco Significance metacluster_0/pattern_7 0.026119200000000002
Spi1	Pattern Name Modisco Significance metacluster_0/pattern_7 0.036104699999999997
Rfx6	Pattern Name Modisco Significance metacluster_0/pattern_8 0.00201112 metacluster_0/pattern_10 0.00162886
Usf1	Pattern Name Modisco Significance metacluster_0/pattern_9 0.016751099999999998 metacluster_0/pattern_13 0.011074200000000001
Tfeb	Pattern Name Modisco Significance metacluster_0/pattern_9 0.000175728
Tfe3	Pattern Name Modisco Significance metacluster_0/pattern_9 0.0008051089999999999
Tfec	Pattern Name Modisco Significance metacluster_0/pattern_9 0.0009237010000000001
Arntl	Pattern Name Modisco Significance metacluster_0/pattern_9 0.0146232
Mitf	Pattern Name Modisco Significance metacluster_0/pattern_9 0.0006660230000000001
Srebf1	Pattern Name Modisco Significance metacluster_0/pattern_9 0.0502151
Bhlhe40	Pattern Name Modisco Significance metacluster_0/pattern_9 0.019663200000000002
Clock	Pattern Name Modisco Significance metacluster_0/pattern_9 0.00106562
Arnt	Pattern Name Modisco Significance metacluster_0/pattern_9 0.059068899999999994
Mlx	Pattern Name Modisco Significance metacluster_0/pattern_9 0.00785116
Mycn	Pattern Name Modisco Significance metacluster_0/pattern_9 0.0536212
Npas2	Pattern Name Modisco Significance metacluster_0/pattern_9 0.00789368
Tcfl5	Pattern Name Modisco Significance metacluster_0/pattern_9 0.0125435
Atf7	Pattern Name Modisco Significance metacluster_0/pattern_9 0.0163495 metacluster_0/pattern_13 0.00101496
Atf2	Pattern Name Modisco Significance metacluster_0/pattern_9 0.017999599999999998 metacluster_0/pattern_13 0.00249508
Max	Pattern Name Modisco Significance metacluster_0/pattern_9 0.0241766
Creb3l2	Pattern Name Modisco Significance metacluster_0/pattern_9 0.03723680000000001
Creb1	Pattern Name Modisco Significance metacluster_0/pattern_9 0.033306699999999995 metacluster_0/pattern_13 0.00249508
Rxrg	Pattern Name Modisco Significance metacluster_0/pattern_9 0.039217400000000006
Bhlhe41	Pattern Name Modisco Significance metacluster_0/pattern_9 0.0453654
Atf1	Pattern Name Modisco Significance metacluster_0/pattern_9 0.0473042 metacluster_0/pattern_13 0.013306799999999999
Rfx3	Pattern Name Modisco Significance metacluster_0/pattern_10 0.0127401
Rfx2	Pattern Name Modisco Significance metacluster_0/pattern_10 1.66391e-07
Rfx4	Pattern Name Modisco Significance metacluster_0/pattern_10 0.000664934
Rfx7	Pattern Name Modisco Significance metacluster_0/pattern_10 0.00489758
Hic1	Pattern Name Modisco Significance metacluster_0/pattern_10 0.0557434
Thap11	Pattern Name Modisco Significance metacluster_0/pattern_11 1.33749e-19
Zfp143	Pattern Name Modisco Significance metacluster_0/pattern_11 4.54406e-19
Tbx2	Pattern Name Modisco Significance metacluster_0/pattern_11 8.71606e-13
Zbtb33	Pattern Name Modisco Significance metacluster_0/pattern_12 3.15639e-05
Crem	Pattern Name Modisco Significance metacluster_0/pattern_13 0.0253036
Jdp2	Pattern Name Modisco Significance metacluster_0/pattern_13 0.00190222
Creb5	Pattern Name Modisco Significance metacluster_0/pattern_13 0.00179561
Atf3	Pattern Name Modisco Significance metacluster_0/pattern_13 0.0366054
Fosl2	Pattern Name Modisco Significance metacluster_0/pattern_13 0.029240199999999997
Jun	Pattern Name Modisco Significance metacluster_0/pattern_13 0.0462079
Yy1	Pattern Name Modisco Significance metacluster_0/pattern_15 4.38601e-06
Taf1	Pattern Name Modisco Significance metacluster_0/pattern_15 4.38601e-06
Zfp42	Pattern Name Modisco Significance metacluster_0/pattern_15 0.00667203
Gli3	Pattern Name Modisco Significance metacluster_0/pattern_24 0.0282348
Bcl6	Pattern Name Modisco Significance metacluster_0/pattern_24 0.0386126
Gli2	Pattern Name Modisco Significance metacluster_0/pattern_24 0.0386126
Gli1	Pattern Name Modisco Significance metacluster_0/pattern_24 0.0409777
Vdr	Pattern Name Modisco Significance metacluster_0/pattern_26 0.0124796

display_paiwise_pattern_comparison(data_name, modisco_root, homer_root)

Number of CISBP TFs obtained by TF-MoDISco and Homer

Shared TFs between TF-MoDISco and Homer: #63

TF Name	Modisco	Homer
Rfx3	Pattern Name Modisco Significance metacluster_0/pattern_10 0.0127401	Pattern Name Homer Significance motif7.motif 0.0203837
Elk1	Pattern Name Modisco Significance metacluster_0/pattern_7 0.000225181	Pattern Name Homer Significance motif6.motif 0.00721875
Klf4	Pattern Name Modisco Significance metacluster_0/pattern_0 0.057483900000000004 metacluster_0/pattern_2 9.67711e-05	Pattern Name Homer Significance motif1.motif 0.0069001
Klf15	Pattern Name Modisco Significance metacluster_0/pattern_0 0.0544414 metacluster_0/pattern_2 9.27409e-05 metacluster_0/pattern_5 0.00529472 metacluster_0/pattern_24 0.0143806	Pattern Name Homer Significance motif1.motif 0.00994466
Fev	Pattern Name Modisco Significance metacluster_0/pattern_7 0.00500539	Pattern Name Homer Significance motif6.motif 0.011742200000000001
Etv5	Pattern Name Modisco Significance metacluster_0/pattern_7 0.000567755	Pattern Name Homer Significance motif6.motif 0.00455773
Crem	Pattern Name Modisco Significance metacluster_0/pattern_13 0.0253036	Pattern Name Homer Significance motif12.motif 0.0191254
Thap11	Pattern Name Modisco Significance metacluster_0/pattern_11 1.33749e-19	Pattern Name Homer Significance motif4.motif 1.34762e-07
Sp1	Pattern Name Modisco Significance metacluster_0/pattern_0 0.0123929 metacluster_0/pattern_2 3.57105e-05 metacluster_0/pattern_3 0.0053234 metacluster_0/pattern_4 0.00122553 metacluster_0/pattern_5 7.111960000000001e-07 metacluster_0/pattern_13 0.013886700000000002 metacluster_0/pattern_15 0.00139077 metacluster_0/pattern_24 0.0143806	Pattern Name Homer Significance motif1.motif 0.0477972
Rfx4	Pattern Name Modisco Significance metacluster_0/pattern_10 0.000664934	Pattern Name Homer Significance motif7.motif 0.0488267
Nfya	Pattern Name Modisco Significance metacluster_0/pattern_1 9.17273e-10	Pattern Name Homer Significance motif2.motif 1.79584e-11
XP_911724.4	Pattern Name Modisco Significance metacluster_0/pattern_7 0.00185989	Pattern Name Homer Significance motif6.motif 0.0078124
Creb1	Pattern Name Modisco Significance metacluster_0/pattern_9 0.033306699999999995 metacluster_0/pattern_13 0.00249508	Pattern Name Homer Significance motif12.motif 0.016169299999999998
Sp3	Pattern Name Modisco Significance metacluster_0/pattern_0 0.000300454 metacluster_0/pattern_2 1.7552900000000003e-06 metacluster_0/pattern_3 0.00455855 metacluster_0/pattern_4 0.00122553 metacluster_0/pattern_5 3.27006e-07 metacluster_0/pattern_13 0.0157173 metacluster_0/pattern_15 0.0009649319999999999	Pattern Name Homer Significance motif1.motif 0.00241666
Klf6	Pattern Name Modisco Significance metacluster_0/pattern_0 0.00558393 metacluster_0/pattern_2 0.00125238 metacluster_0/pattern_5 0.00249864	Pattern Name Homer Significance motif1.motif 0.0024229
Ehf	Pattern Name Modisco Significance metacluster_0/pattern_7 0.00398763	Pattern Name Homer Significance motif6.motif 0.0191838
Ets1	Pattern Name Modisco Significance metacluster_0/pattern_7 0.00066518	Pattern Name Homer Significance motif6.motif 0.0078124
Rfx2	Pattern Name Modisco Significance metacluster_0/pattern_10 1.66391e-07	Pattern Name Homer Significance motif7.motif 0.001347
Gabpa	Pattern Name Modisco Significance metacluster_0/pattern_7 0.000555453	Pattern Name Homer Significance motif6.motif 0.00721875
E2f4	Pattern Name Modisco Significance metacluster_0/pattern_0 0.00642519 metacluster_0/pattern_2 0.000629446	Pattern Name Homer Significance motif1.motif 0.0112774
Etv3	Pattern Name Modisco Significance metacluster_0/pattern_7 0.00155166	Pattern Name Homer Significance motif6.motif 0.0078124
Klf3	Pattern Name Modisco Significance metacluster_0/pattern_0 0.0005005459999999999 metacluster_0/pattern_2 1.3721600000000001e-05 metacluster_0/pattern_3 0.020687599999999997 metacluster_0/pattern_4 0.044097199999999996 metacluster_0/pattern_5 1.1359200000000001e-05 metacluster_0/pattern_15 0.0179894 metacluster_0/pattern_24 0.0386126	Pattern Name Homer Significance motif1.motif 0.00154006
Gli2	Pattern Name Modisco Significance metacluster_0/pattern_24 0.0386126	Pattern Name Homer Significance motif21.motif 0.056205399999999996
Klf5	Pattern Name Modisco Significance metacluster_0/pattern_0 0.0554235 metacluster_0/pattern_2 8.44641e-05 metacluster_0/pattern_5 0.00272083	Pattern Name Homer Significance motif1.motif 0.015777600000000003
Elf4	Pattern Name Modisco Significance metacluster_0/pattern_7 0.000589553	Pattern Name Homer Significance motif6.motif 0.00767232
Atf2	Pattern Name Modisco Significance metacluster_0/pattern_9 0.017999599999999998 metacluster_0/pattern_13 0.00249508	Pattern Name Homer Significance motif12.motif 0.0191254
Tbx2	Pattern Name Modisco Significance metacluster_0/pattern_11 8.71606e-13	Pattern Name Homer Significance motif4.motif 1.17279e-05
Zfp143	Pattern Name Modisco Significance metacluster_0/pattern_11 4.54406e-19	Pattern Name Homer Significance motif4.motif 1.53458e-07
Elf1	Pattern Name Modisco Significance metacluster_0/pattern_7 1.41306e-06	Pattern Name Homer Significance motif6.motif 0.00455773
Klf7	Pattern Name Modisco Significance metacluster_0/pattern_0 0.00889918 metacluster_0/pattern_2 8.060390000000001e-05	Pattern Name Homer Significance motif1.motif 0.00195456
Klf1	Pattern Name Modisco Significance metacluster_0/pattern_0 0.010442 metacluster_0/pattern_2 0.0232201 metacluster_0/pattern_5 0.0194038	Pattern Name Homer Significance motif1.motif 0.0069001
Klf8	Pattern Name Modisco Significance metacluster_0/pattern_0 0.010162000000000001 metacluster_0/pattern_2 0.00011768899999999999	Pattern Name Homer Significance motif1.motif 0.00241666
Sp4	Pattern Name Modisco Significance metacluster_0/pattern_0 0.0162657 metacluster_0/pattern_2 0.0007349289999999999 metacluster_0/pattern_5 0.028930900000000002	Pattern Name Homer Significance motif1.motif 0.0492344
Nfyc	Pattern Name Modisco Significance metacluster_0/pattern_1 4.37495e-11	Pattern Name Homer Significance motif2.motif 1.20395e-09
Elk4	Pattern Name Modisco Significance metacluster_0/pattern_7 0.000555453	Pattern Name Homer Significance motif6.motif 0.00767232
Foxi1	Pattern Name Modisco Significance metacluster_0/pattern_1 7.698569999999999e-07	Pattern Name Homer Significance motif2.motif 1.78598e-05
Spi1	Pattern Name Modisco Significance metacluster_0/pattern_7 0.036104699999999997	Pattern Name Homer Significance motif6.motif 0.0464211
Rfx7	Pattern Name Modisco Significance metacluster_0/pattern_10 0.00489758	Pattern Name Homer Significance motif7.motif 0.04693680000000001
Rfx6	Pattern Name Modisco Significance metacluster_0/pattern_8 0.00201112 metacluster_0/pattern_10 0.00162886	Pattern Name Homer Significance motif7.motif 0.04693680000000001
Elk3	Pattern Name Modisco Significance metacluster_0/pattern_7 0.000271044	Pattern Name Homer Significance motif6.motif 0.00721875
Elf3	Pattern Name Modisco Significance metacluster_0/pattern_7 0.0229012	Pattern Name Homer Significance motif6.motif 0.0436376
Atf1	Pattern Name Modisco Significance metacluster_0/pattern_9 0.0473042 metacluster_0/pattern_13 0.013306799999999999	Pattern Name Homer Significance motif12.motif 0.0267807
Nrf1	Pattern Name Modisco Significance metacluster_0/pattern_3 7.40317e-06	Pattern Name Homer Significance motif3.motif 1.5882e-05
Erg	Pattern Name Modisco Significance metacluster_0/pattern_7 0.000589553	Pattern Name Homer Significance motif6.motif 0.0078124
Atf7	Pattern Name Modisco Significance metacluster_0/pattern_9 0.0163495 metacluster_0/pattern_13 0.00101496	Pattern Name Homer Significance motif12.motif 0.0183498
Sp5	Pattern Name Modisco Significance metacluster_0/pattern_0 0.00758559 metacluster_0/pattern_2 6.7288e-08 metacluster_0/pattern_5 0.028205 metacluster_0/pattern_24 0.00685763	Pattern Name Homer Significance motif1.motif 0.030364
Elf5	Pattern Name Modisco Significance metacluster_0/pattern_7 0.013831200000000002	Pattern Name Homer Significance motif6.motif 0.012123700000000001
Nfyb	Pattern Name Modisco Significance metacluster_0/pattern_1 2.67768e-12	Pattern Name Homer Significance motif2.motif 5.857909999999999e-10
Egr1	Pattern Name Modisco Significance metacluster_0/pattern_0 0.00832272 metacluster_0/pattern_2 0.054707000000000006	Pattern Name Homer Significance motif1.motif 0.012852299999999999
Gli1	Pattern Name Modisco Significance metacluster_0/pattern_24 0.0409777	Pattern Name Homer Significance motif21.motif 0.056205399999999996
Klf12	Pattern Name Modisco Significance metacluster_0/pattern_0 0.0142852 metacluster_0/pattern_2 0.054707000000000006	Pattern Name Homer Significance motif1.motif 0.040035
Fli1	Pattern Name Modisco Significance metacluster_0/pattern_2 0.0466469 metacluster_0/pattern_7 0.00066518	Pattern Name Homer Significance motif6.motif 0.0078124
Elf2	Pattern Name Modisco Significance metacluster_0/pattern_7 0.00113604	Pattern Name Homer Significance motif6.motif 0.00767232
Sp2	Pattern Name Modisco Significance metacluster_0/pattern_0 0.000300454 metacluster_0/pattern_2 5.781929999999999e-07 metacluster_0/pattern_3 6.82156e-05 metacluster_0/pattern_4 0.000108648 metacluster_0/pattern_5 3.4816199999999996e-08 metacluster_0/pattern_9 0.052478 metacluster_0/pattern_12 0.029388099999999997 metacluster_0/pattern_13 0.00156417 metacluster_0/pattern_15 5.0538e-05 metacluster_0/pattern_24 0.0374209	Pattern Name Homer Significance motif1.motif 0.00241666
Zbtb17	Pattern Name Modisco Significance metacluster_0/pattern_0 0.00889918 metacluster_0/pattern_2 3.86123e-05 metacluster_0/pattern_5 0.00249864 metacluster_0/pattern_15 0.0210949	Pattern Name Homer Significance motif1.motif 0.0329073
Etv1	Pattern Name Modisco Significance metacluster_0/pattern_7 0.000567755	Pattern Name Homer Significance motif6.motif 0.00767232
Jdp2	Pattern Name Modisco Significance metacluster_0/pattern_13 0.00190222	Pattern Name Homer Significance motif12.motif 0.0296
Creb5	Pattern Name Modisco Significance metacluster_0/pattern_13 0.00179561	Pattern Name Homer Significance motif12.motif 0.011814100000000001
Etv4	Pattern Name Modisco Significance metacluster_0/pattern_7 0.00967032	Pattern Name Homer Significance motif6.motif 0.00767232
E2f1	Pattern Name Modisco Significance metacluster_0/pattern_2 0.0370556	Pattern Name Homer Significance motif1.motif 0.0247859
Spdef	Pattern Name Modisco Significance metacluster_0/pattern_7 0.026119200000000002	Pattern Name Homer Significance motif6.motif 0.0385652
Pbx3	Pattern Name Modisco Significance metacluster_0/pattern_1 4.82216e-06	Pattern Name Homer Significance motif2.motif 8.48434e-05
Etv6	Pattern Name Modisco Significance metacluster_0/pattern_7 0.0488648	Pattern Name Homer Significance motif6.motif 0.00721875

Unique TF-MoDISco TFs: #50

TF Name	Modisco	Homer
Fosl2	Pattern Name Modisco Significance metacluster_0/pattern_13 0.029240199999999997	Absent
Ptf1a	Pattern Name Modisco Significance metacluster_0/pattern_0 0.0465073	Absent
Arntl	Pattern Name Modisco Significance metacluster_0/pattern_9 0.0146232	Absent
Gli3	Pattern Name Modisco Significance metacluster_0/pattern_24 0.0282348	Absent
Tcfl5	Pattern Name Modisco Significance metacluster_0/pattern_9 0.0125435	Absent
Creb3l2	Pattern Name Modisco Significance metacluster_0/pattern_9 0.03723680000000001	Absent
Jun	Pattern Name Modisco Significance metacluster_0/pattern_13 0.0462079	Absent
Zfp42	Pattern Name Modisco Significance metacluster_0/pattern_15 0.00667203	Absent
Npas2	Pattern Name Modisco Significance metacluster_0/pattern_9 0.00789368	Absent
Taf1	Pattern Name Modisco Significance metacluster_0/pattern_15 4.38601e-06	Absent
Rxrg	Pattern Name Modisco Significance metacluster_0/pattern_9 0.039217400000000006	Absent
Maz	Pattern Name Modisco Significance metacluster_0/pattern_2 1.3721600000000001e-05 metacluster_0/pattern_5 0.036313599999999994 metacluster_0/pattern_24 0.00685763	Absent
Rfx1	Pattern Name Modisco Significance metacluster_0/pattern_3 0.0474479 metacluster_0/pattern_4 0.024781400000000002 metacluster_0/pattern_5 0.00688997 metacluster_0/pattern_9 0.051167800000000006 metacluster_0/pattern_10 1.70573e-09 metacluster_0/pattern_13 0.052003999999999995	Absent
Srebf1	Pattern Name Modisco Significance metacluster_0/pattern_9 0.0502151	Absent
Mlx	Pattern Name Modisco Significance metacluster_0/pattern_9 0.00785116	Absent
Tfec	Pattern Name Modisco Significance metacluster_0/pattern_9 0.0009237010000000001	Absent
Yy1	Pattern Name Modisco Significance metacluster_0/pattern_15 4.38601e-06	Absent
Mxi1	Pattern Name Modisco Significance metacluster_0/pattern_2 0.0250623 metacluster_0/pattern_3 0.0229395 metacluster_0/pattern_4 0.016470699999999998 metacluster_0/pattern_5 0.00688997 metacluster_0/pattern_9 0.00134195	Absent
Max	Pattern Name Modisco Significance metacluster_0/pattern_9 0.0241766	Absent
Bcl6	Pattern Name Modisco Significance metacluster_0/pattern_24 0.0386126	Absent
Gata1	Pattern Name Modisco Significance metacluster_0/pattern_2 0.054707000000000006	Absent
Zbtb1	Pattern Name Modisco Significance metacluster_0/pattern_2 0.0471364	Absent
Zfx	Pattern Name Modisco Significance metacluster_0/pattern_2 0.00622289 metacluster_0/pattern_3 0.0150977 metacluster_0/pattern_4 0.054464599999999995 metacluster_0/pattern_5 0.0399588 metacluster_0/pattern_9 0.0241766 metacluster_0/pattern_12 0.029388099999999997 metacluster_0/pattern_13 0.0294083 metacluster_0/pattern_15 0.00667203	Absent
Myc	Pattern Name Modisco Significance metacluster_0/pattern_4 0.0485087 metacluster_0/pattern_9 0.0503272	Absent
Etv2	Pattern Name Modisco Significance metacluster_0/pattern_7 0.000555453	Absent
Wt1	Pattern Name Modisco Significance metacluster_0/pattern_0 0.0294013 metacluster_0/pattern_2 4.85499e-06 metacluster_0/pattern_5 0.00952482 metacluster_0/pattern_24 0.0182506	Absent
Nhlh1	Pattern Name Modisco Significance metacluster_0/pattern_0 0.0330249	Absent
Bhlhe40	Pattern Name Modisco Significance metacluster_0/pattern_9 0.019663200000000002	Absent
Usf2	Pattern Name Modisco Significance metacluster_0/pattern_3 0.0324387 metacluster_0/pattern_4 0.00446319 metacluster_0/pattern_5 0.00250827 metacluster_0/pattern_9 0.00789368 metacluster_0/pattern_12 0.0432525 metacluster_0/pattern_13 3.8158200000000003e-05	Absent
Rela	Pattern Name Modisco Significance metacluster_0/pattern_2 0.0440615 metacluster_0/pattern_24 0.0386126	Absent
Clock	Pattern Name Modisco Significance metacluster_0/pattern_9 0.00106562	Absent
Ctcf	Pattern Name Modisco Significance metacluster_0/pattern_6 2.09801e-08	Absent
Arnt	Pattern Name Modisco Significance metacluster_0/pattern_9 0.059068899999999994	Absent
Egr3	Pattern Name Modisco Significance metacluster_0/pattern_2 0.0575059	Absent
Atf3	Pattern Name Modisco Significance metacluster_0/pattern_13 0.0366054	Absent
Vdr	Pattern Name Modisco Significance metacluster_0/pattern_26 0.0124796	Absent
Zfp740	Pattern Name Modisco Significance metacluster_0/pattern_2 0.0284186	Absent
Mycn	Pattern Name Modisco Significance metacluster_0/pattern_9 0.0536212	Absent
Egr2	Pattern Name Modisco Significance metacluster_0/pattern_0 0.0123929 metacluster_0/pattern_2 0.0378904	Absent
Sall4	Pattern Name Modisco Significance metacluster_0/pattern_2 0.045513599999999994	Absent
Ctcfl	Pattern Name Modisco Significance metacluster_0/pattern_2 0.004996899999999999 metacluster_0/pattern_4 0.0282392 metacluster_0/pattern_5 0.00688997 metacluster_0/pattern_6 9.14213e-11	Absent
Tfeb	Pattern Name Modisco Significance metacluster_0/pattern_9 0.000175728	Absent
Tfe3	Pattern Name Modisco Significance metacluster_0/pattern_9 0.0008051089999999999	Absent
Usf1	Pattern Name Modisco Significance metacluster_0/pattern_9 0.016751099999999998 metacluster_0/pattern_13 0.011074200000000001	Absent
Srebf2	Pattern Name Modisco Significance metacluster_0/pattern_2 0.054707000000000006 metacluster_0/pattern_9 0.00699862 metacluster_0/pattern_13 0.0531284	Absent
Hic1	Pattern Name Modisco Significance metacluster_0/pattern_10 0.0557434	Absent
Mitf	Pattern Name Modisco Significance metacluster_0/pattern_9 0.0006660230000000001	Absent
Zbtb33	Pattern Name Modisco Significance metacluster_0/pattern_12 3.15639e-05	Absent
Zfp281	Pattern Name Modisco Significance metacluster_0/pattern_0 0.0256848 metacluster_0/pattern_2 0.054707000000000006	Absent
Bhlhe41	Pattern Name Modisco Significance metacluster_0/pattern_9 0.0453654	Absent

Unique Homer TFs: #1

TF Name	Modisco	Homer
Spib	Absent	Pattern Name Homer Significance motif6.motif 0.0323266