# Parameters
data_name = "aB_LPS+IL4;A;CL"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
tomtom_report_root = "http://mitra.stanford.edu/kundaje/msharmin/report/tomtom_outs/cells"
task_dir = "task_14-naivegw"
perf_file = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/fineFactorized/task_14-naivegw/NaiveauPRC.txt"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
reportfile = "/mnt/lab_data/kundaje/msharmin/annotations/filtering samples_MS2.xlsx"
sheetname = "filter23"

from matlas.reports import display_metadata

load data from labcluster

Using TensorFlow backend.
2019-08-30 18:41:46,092 [WARNING] git-lfs not installed

display_metadata(data_name, perf_file, reportfile, sheetname)

Sample Information

MetaData Name	Description
Cell type	aB LPS+IL4
Cell Group	B cells
Experiment Name	ATAC
Experiment Group	Casellas Lab

Pipeline Output

replicate	Naïve overlap peaks	IDR peaks	TSS enrichment (< 8 is very poor <10 is low)	Final number of unique mapping, dup-filtered, chrM filtered reads	Number of reads in called peak regions	Fraction of reads in called peak regions	Number of reads in promoter regions	Fraction of reads in promoter regions	Number of reads in enhancer regions	Fraction of reads in enhancer regions
rep1	68125	44658	12.5363	52652314	5584430	0.1061	5397217	0.1025	16983816	0.3227

Modelling Metadata

Metric	Value
auPRC	0.6599
Calibrated Recall at 50% FDR	0.194
Number of Positive Examples in Test Data	52681
Number of Negative Examples in Test Data	8018170
Imbalance Ratio in Test Data	0.0065
Test Chromosomes	chr2, chr3, chr19

from matlas.reports import display_paiwise_pattern_comparison
from matlas.reports import display_denovo_patterns

display_denovo_patterns(data_name, modisco_root=modisco_root)

TF-MoDISco is using the TensorFlow backend.

The following two links show list of Denovo Patterns and corresponding Motifs discovered by TF-MoDISco

Click here for Denovo Patterns by TF-MoDISco: #19

Pattern Name	TF Name(s)	Modisco
metacluster_1/pattern_0 # seqlets: 6504 SequenceContrib ScoresHyp_Contrib Scores	Spi1, Spib, Irf8, Irf4, Etv6, Spic, Ets1, Etv2, Etv4, Erg, Elk1, Fli1, Gabpa, Etv3, XP_911724.4, Elf1, Ehf, Elk4, Elf4, Elf3, Elk3, Elf2, Etv1, Etv5, Elf5, Prdm1, Irf3, Irf2, Fev, Irf1, Spdef
metacluster_1/pattern_1 # seqlets: 4683 SequenceContrib ScoresHyp_Contrib Scores	Ctcf, Ctcfl
metacluster_1/pattern_2 # seqlets: 3368 SequenceContrib ScoresHyp_Contrib Scores	Sp4, Sp2, Klf3, Sp3, Sp1, E2f4, Klf6, Klf7, Klf4, Klf1, Klf8, Klf12, Egr1, Zbtb17, Egr2, E2f1, Klf5, Sp5, Zfp281, Zfx, Zfp740, Egr3, Zbtb1
metacluster_1/pattern_3 # seqlets: 1892 SequenceContrib ScoresHyp_Contrib Scores	Nfyb, Nfyc, Nfya, Foxi1, Pbx3
metacluster_1/pattern_4 # seqlets: 1378 SequenceContrib ScoresHyp_Contrib Scores	Stat2, Irf7, Stat1, Irf9, Irf5, Zscan10, Irf6
metacluster_1/pattern_5 # seqlets: 1353 SequenceContrib ScoresHyp_Contrib Scores	Nrf1
metacluster_1/pattern_6 # seqlets: 1215 SequenceContrib ScoresHyp_Contrib Scores	Taf1, Yy1, Wt1, Zfp42, Maz, Mxi1, Klf15, Usf2
metacluster_1/pattern_7 # seqlets: 978 SequenceContrib ScoresHyp_Contrib Scores	Zfp143, Thap11, Tbx2
metacluster_1/pattern_8 # seqlets: 888 SequenceContrib ScoresHyp_Contrib Scores	Creb1, Atf2, Atf7, Atf1, Jdp2, Crem, Atf3, Creb5, Fosl2, Jun, Fosl1, Nfil3, Rxrb, Tef
metacluster_1/pattern_9 # seqlets: 542 SequenceContrib ScoresHyp_Contrib Scores	Pou2f2, Pou5f1, Pou2f1
metacluster_1/pattern_10 # seqlets: 504 SequenceContrib ScoresHyp_Contrib Scores	Usf1, Tfec, Tfeb, Mitf, Arntl, Srebf1, Bhlhe40, Tfe3, Mlx, Clock, Arnt, Npas2, Srebf2, Creb3l2, Tcfl5, Bhlhe41, Xbp1, Hlf, Dbp, Mycn, Mlxip, Max
metacluster_1/pattern_11 # seqlets: 504 SequenceContrib ScoresHyp_Contrib Scores	Fos, Fosb, Jund, Junb, Batf, Bach2, Nfe2, Nfe2l2, Bach1, Mafa, Mafk
metacluster_1/pattern_12 # seqlets: 414 SequenceContrib ScoresHyp_Contrib Scores	Rfx3, Rfx1, Rfx2, Rfx4, Rfx7, Rfx6, Sox2
metacluster_1/pattern_13 # seqlets: 357 SequenceContrib ScoresHyp_Contrib Scores	Nfkb2, Nfkb1, Rela, Relb, Rel
metacluster_1/pattern_14 # seqlets: 263 SequenceContrib ScoresHyp_Contrib Scores	Zbtb33
metacluster_1/pattern_15 # seqlets: 179 SequenceContrib ScoresHyp_Contrib Scores	Runx1, Runx2, Runx3, Cbfb, Gfi1b
metacluster_1/pattern_16 # seqlets: 154 SequenceContrib ScoresHyp_Contrib Scores
metacluster_1/pattern_17 # seqlets: 135 SequenceContrib ScoresHyp_Contrib Scores
metacluster_1/pattern_18 # seqlets: 110 SequenceContrib ScoresHyp_Contrib Scores	Mef2d, Mef2a, Mef2c

Click here for Motifs by TF-MoDISco: #151

TF Name	Pattern(s)
Spi1	Pattern Name Modisco Significance metacluster_1/pattern_0 0.000341603 metacluster_1/pattern_4 0.0459846
Spib	Pattern Name Modisco Significance metacluster_1/pattern_0 1.05599e-05 metacluster_1/pattern_4 1.2922699999999999e-05
Irf8	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00011544700000000001 metacluster_1/pattern_4 4.0113300000000005e-09
Irf4	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00011544700000000001 metacluster_1/pattern_4 0.00305964
Etv6	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00132879
Spic	Pattern Name Modisco Significance metacluster_1/pattern_0 0.000341603
Ets1	Pattern Name Modisco Significance metacluster_1/pattern_0 0.000341603 metacluster_1/pattern_16 0.030679
Etv2	Pattern Name Modisco Significance metacluster_1/pattern_0 0.000122387
Etv4	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00119827
Erg	Pattern Name Modisco Significance metacluster_1/pattern_0 0.000341603
Elk1	Pattern Name Modisco Significance metacluster_1/pattern_0 0.0009295089999999999 metacluster_1/pattern_16 0.030679
Fli1	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00276623 metacluster_1/pattern_16 0.051778599999999994
Gabpa	Pattern Name Modisco Significance metacluster_1/pattern_0 0.010125499999999999
Etv3	Pattern Name Modisco Significance metacluster_1/pattern_0 0.000341603
XP_911724.4	Pattern Name Modisco Significance metacluster_1/pattern_0 0.000361547
Elf1	Pattern Name Modisco Significance metacluster_1/pattern_0 0.000412196
Ehf	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00207249
Elk4	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00102051
Elf4	Pattern Name Modisco Significance metacluster_1/pattern_0 0.000565791
Elf3	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00529812
Elk3	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00101496
Elf2	Pattern Name Modisco Significance metacluster_1/pattern_0 0.0148822
Etv1	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00125082
Etv5	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00102051
Elf5	Pattern Name Modisco Significance metacluster_1/pattern_0 0.0114349
Prdm1	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00526754 metacluster_1/pattern_4 0.00713173
Irf3	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00559299 metacluster_1/pattern_4 0.026595599999999997
Irf2	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00651541 metacluster_1/pattern_4 0.00454642
Fev	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00843839
Irf1	Pattern Name Modisco Significance metacluster_1/pattern_0 0.0107783 metacluster_1/pattern_4 2.03996e-07
Spdef	Pattern Name Modisco Significance metacluster_1/pattern_0 0.0113325
Ctcf	Pattern Name Modisco Significance metacluster_1/pattern_1 5.07345e-13
Ctcfl	Pattern Name Modisco Significance metacluster_1/pattern_1 3.71296e-08
Sp4	Pattern Name Modisco Significance metacluster_1/pattern_2 0.00143086
Sp2	Pattern Name Modisco Significance metacluster_1/pattern_2 2.7557099999999996e-06 metacluster_1/pattern_6 1.88024e-05
Klf3	Pattern Name Modisco Significance metacluster_1/pattern_2 1.11983e-05 metacluster_1/pattern_6 0.019446599999999998
Sp3	Pattern Name Modisco Significance metacluster_1/pattern_2 1.11983e-05 metacluster_1/pattern_6 0.000153423
Sp1	Pattern Name Modisco Significance metacluster_1/pattern_2 0.000451915 metacluster_1/pattern_6 3.25202e-05
E2f4	Pattern Name Modisco Significance metacluster_1/pattern_2 0.000451915
Klf6	Pattern Name Modisco Significance metacluster_1/pattern_2 0.000543511
Klf7	Pattern Name Modisco Significance metacluster_1/pattern_2 0.000543511
Klf4	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0100985
Klf1	Pattern Name Modisco Significance metacluster_1/pattern_2 0.037675400000000005 metacluster_1/pattern_16 0.038762599999999994
Klf8	Pattern Name Modisco Significance metacluster_1/pattern_2 0.000876898
Klf12	Pattern Name Modisco Significance metacluster_1/pattern_2 0.013247899999999998
Egr1	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0427607 metacluster_1/pattern_6 0.0516144
Zbtb17	Pattern Name Modisco Significance metacluster_1/pattern_2 0.00638321 metacluster_1/pattern_6 0.00389239
Egr2	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0402954 metacluster_1/pattern_6 0.03094
E2f1	Pattern Name Modisco Significance metacluster_1/pattern_2 0.013247899999999998
Klf5	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0156344
Sp5	Pattern Name Modisco Significance metacluster_1/pattern_2 0.021063400000000003 metacluster_1/pattern_6 0.055335
Zfp281	Pattern Name Modisco Significance metacluster_1/pattern_2 0.023790000000000002
Zfx	Pattern Name Modisco Significance metacluster_1/pattern_2 0.037675400000000005 metacluster_1/pattern_6 0.00175184 metacluster_1/pattern_8 0.0164772
Zfp740	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0421918
Egr3	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0523486
Zbtb1	Pattern Name Modisco Significance metacluster_1/pattern_2 0.05666
Nfyb	Pattern Name Modisco Significance metacluster_1/pattern_3 2.8055700000000004e-10
Nfyc	Pattern Name Modisco Significance metacluster_1/pattern_3 4.70738e-06
Nfya	Pattern Name Modisco Significance metacluster_1/pattern_3 7.29414e-06
Foxi1	Pattern Name Modisco Significance metacluster_1/pattern_3 7.29414e-06
Pbx3	Pattern Name Modisco Significance metacluster_1/pattern_3 9.910850000000001e-05
Stat2	Pattern Name Modisco Significance metacluster_1/pattern_4 0.00038583300000000003
Irf7	Pattern Name Modisco Significance metacluster_1/pattern_4 0.000427134
Stat1	Pattern Name Modisco Significance metacluster_1/pattern_4 0.000534439
Irf9	Pattern Name Modisco Significance metacluster_1/pattern_4 0.00443644
Irf5	Pattern Name Modisco Significance metacluster_1/pattern_4 0.020232
Zscan10	Pattern Name Modisco Significance metacluster_1/pattern_4 0.036408800000000005
Irf6	Pattern Name Modisco Significance metacluster_1/pattern_4 0.05710610000000001
Nrf1	Pattern Name Modisco Significance metacluster_1/pattern_5 2.92104e-08
Taf1	Pattern Name Modisco Significance metacluster_1/pattern_6 4.86772e-06
Yy1	Pattern Name Modisco Significance metacluster_1/pattern_6 1.5659700000000002e-05
Wt1	Pattern Name Modisco Significance metacluster_1/pattern_6 0.0117868
Zfp42	Pattern Name Modisco Significance metacluster_1/pattern_6 0.0125897
Maz	Pattern Name Modisco Significance metacluster_1/pattern_6 0.0131961
Mxi1	Pattern Name Modisco Significance metacluster_1/pattern_6 0.03094
Klf15	Pattern Name Modisco Significance metacluster_1/pattern_6 0.0373036
Usf2	Pattern Name Modisco Significance metacluster_1/pattern_6 0.0432613 metacluster_1/pattern_8 0.000151178 metacluster_1/pattern_10 0.00269236
Zfp143	Pattern Name Modisco Significance metacluster_1/pattern_7 2.37105e-21
Thap11	Pattern Name Modisco Significance metacluster_1/pattern_7 3.53169e-21
Tbx2	Pattern Name Modisco Significance metacluster_1/pattern_7 2.1658200000000002e-13
Creb1	Pattern Name Modisco Significance metacluster_1/pattern_8 0.00228994 metacluster_1/pattern_10 0.055678399999999996
Atf2	Pattern Name Modisco Significance metacluster_1/pattern_8 0.00131932
Atf7	Pattern Name Modisco Significance metacluster_1/pattern_8 0.00040110199999999997
Atf1	Pattern Name Modisco Significance metacluster_1/pattern_8 0.0139219 metacluster_1/pattern_10 0.0123887
Jdp2	Pattern Name Modisco Significance metacluster_1/pattern_8 0.00117962 metacluster_1/pattern_11 3.25792e-05
Crem	Pattern Name Modisco Significance metacluster_1/pattern_8 0.00779946
Atf3	Pattern Name Modisco Significance metacluster_1/pattern_8 0.00498601 metacluster_1/pattern_11 3.25792e-05
Creb5	Pattern Name Modisco Significance metacluster_1/pattern_8 0.00285035
Fosl2	Pattern Name Modisco Significance metacluster_1/pattern_8 0.00779946 metacluster_1/pattern_11 0.000123807
Jun	Pattern Name Modisco Significance metacluster_1/pattern_8 0.0187492 metacluster_1/pattern_11 0.0234715
Fosl1	Pattern Name Modisco Significance metacluster_1/pattern_8 0.022518700000000003 metacluster_1/pattern_11 0.033505599999999996
Nfil3	Pattern Name Modisco Significance metacluster_1/pattern_8 0.037084
Rxrb	Pattern Name Modisco Significance metacluster_1/pattern_8 0.0481574
Tef	Pattern Name Modisco Significance metacluster_1/pattern_8 0.05926
Pou2f2	Pattern Name Modisco Significance metacluster_1/pattern_9 0.016550400000000003
Pou5f1	Pattern Name Modisco Significance metacluster_1/pattern_9 0.047666900000000005 metacluster_1/pattern_12 0.0487596
Pou2f1	Pattern Name Modisco Significance metacluster_1/pattern_9 0.047666900000000005
Usf1	Pattern Name Modisco Significance metacluster_1/pattern_10 0.00320995
Tfec	Pattern Name Modisco Significance metacluster_1/pattern_10 0.00233603
Tfeb	Pattern Name Modisco Significance metacluster_1/pattern_10 0.00117033
Mitf	Pattern Name Modisco Significance metacluster_1/pattern_10 0.00159205
Arntl	Pattern Name Modisco Significance metacluster_1/pattern_10 0.00526972
Srebf1	Pattern Name Modisco Significance metacluster_1/pattern_10 0.00233603
Bhlhe40	Pattern Name Modisco Significance metacluster_1/pattern_10 0.0101477
Tfe3	Pattern Name Modisco Significance metacluster_1/pattern_10 0.00233603
Mlx	Pattern Name Modisco Significance metacluster_1/pattern_10 0.0221547
Clock	Pattern Name Modisco Significance metacluster_1/pattern_10 0.0368857
Arnt	Pattern Name Modisco Significance metacluster_1/pattern_10 0.0368857
Npas2	Pattern Name Modisco Significance metacluster_1/pattern_10 0.00233603
Srebf2	Pattern Name Modisco Significance metacluster_1/pattern_10 0.00320874
Creb3l2	Pattern Name Modisco Significance metacluster_1/pattern_10 0.04252569999999999
Tcfl5	Pattern Name Modisco Significance metacluster_1/pattern_10 0.00418764
Bhlhe41	Pattern Name Modisco Significance metacluster_1/pattern_10 0.016400099999999997
Xbp1	Pattern Name Modisco Significance metacluster_1/pattern_10 0.0346539
Hlf	Pattern Name Modisco Significance metacluster_1/pattern_10 0.0431293
Dbp	Pattern Name Modisco Significance metacluster_1/pattern_10 0.0448284
Mycn	Pattern Name Modisco Significance metacluster_1/pattern_10 0.050760900000000005
Mlxip	Pattern Name Modisco Significance metacluster_1/pattern_10 0.0537062
Max	Pattern Name Modisco Significance metacluster_1/pattern_10 0.0571957
Fos	Pattern Name Modisco Significance metacluster_1/pattern_11 3.3082300000000003e-06
Fosb	Pattern Name Modisco Significance metacluster_1/pattern_11 3.3082300000000003e-06
Jund	Pattern Name Modisco Significance metacluster_1/pattern_11 0.00316012
Junb	Pattern Name Modisco Significance metacluster_1/pattern_11 0.014079099999999999
Batf	Pattern Name Modisco Significance metacluster_1/pattern_11 0.0084097
Bach2	Pattern Name Modisco Significance metacluster_1/pattern_11 0.0036506
Nfe2	Pattern Name Modisco Significance metacluster_1/pattern_11 0.00611872
Nfe2l2	Pattern Name Modisco Significance metacluster_1/pattern_11 0.00691495
Bach1	Pattern Name Modisco Significance metacluster_1/pattern_11 0.00824996
Mafa	Pattern Name Modisco Significance metacluster_1/pattern_11 0.039148
Mafk	Pattern Name Modisco Significance metacluster_1/pattern_11 0.0513592
Rfx3	Pattern Name Modisco Significance metacluster_1/pattern_12 0.00149968
Rfx1	Pattern Name Modisco Significance metacluster_1/pattern_12 2.74573e-09
Rfx2	Pattern Name Modisco Significance metacluster_1/pattern_12 0.0339096
Rfx4	Pattern Name Modisco Significance metacluster_1/pattern_12 8.62935e-05
Rfx7	Pattern Name Modisco Significance metacluster_1/pattern_12 0.0006464880000000001
Rfx6	Pattern Name Modisco Significance metacluster_1/pattern_12 0.00128474
Sox2	Pattern Name Modisco Significance metacluster_1/pattern_12 0.0448765
Nfkb2	Pattern Name Modisco Significance metacluster_1/pattern_13 2.8756e-07
Nfkb1	Pattern Name Modisco Significance metacluster_1/pattern_13 5.8070600000000006e-05
Rela	Pattern Name Modisco Significance metacluster_1/pattern_13 0.000460477
Relb	Pattern Name Modisco Significance metacluster_1/pattern_13 0.000162907
Rel	Pattern Name Modisco Significance metacluster_1/pattern_13 0.0415722
Zbtb33	Pattern Name Modisco Significance metacluster_1/pattern_14 3.17398e-05
Runx1	Pattern Name Modisco Significance metacluster_1/pattern_15 0.00030475099999999997
Runx2	Pattern Name Modisco Significance metacluster_1/pattern_15 0.0121305
Runx3	Pattern Name Modisco Significance metacluster_1/pattern_15 0.00114286 metacluster_1/pattern_16 0.051778599999999994
Cbfb	Pattern Name Modisco Significance metacluster_1/pattern_15 0.00380536
Gfi1b	Pattern Name Modisco Significance metacluster_1/pattern_15 0.0487916
Mef2d	Pattern Name Modisco Significance metacluster_1/pattern_18 9.12659e-14
Mef2a	Pattern Name Modisco Significance metacluster_1/pattern_18 6.29787e-05
Mef2c	Pattern Name Modisco Significance metacluster_1/pattern_18 2.96423e-09

display_paiwise_pattern_comparison(data_name, modisco_root, homer_root)

Number of CISBP TFs obtained by TF-MoDISco and Homer

Shared TFs between TF-MoDISco and Homer: #77

TF Name	Modisco	Homer
Spi1	Pattern Name Modisco Significance metacluster_1/pattern_0 0.000341603 metacluster_1/pattern_4 0.0459846	Pattern Name Homer Significance motif3.motif 0.0197368
Zbtb1	Pattern Name Modisco Significance metacluster_1/pattern_2 0.05666	Pattern Name Homer Significance motif2.motif 0.021162
Runx1	Pattern Name Modisco Significance metacluster_1/pattern_15 0.00030475099999999997	Pattern Name Homer Significance motif16.motif 0.0355727
Nfya	Pattern Name Modisco Significance metacluster_1/pattern_3 7.29414e-06	Pattern Name Homer Significance motif5.motif 8.665089999999999e-07
Sp4	Pattern Name Modisco Significance metacluster_1/pattern_2 0.00143086	Pattern Name Homer Significance motif2.motif 0.0162091
Klf5	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0156344	Pattern Name Homer Significance motif2.motif 0.00142722
Sp1	Pattern Name Modisco Significance metacluster_1/pattern_2 0.000451915 metacluster_1/pattern_6 3.25202e-05	Pattern Name Homer Significance motif2.motif 0.00509853 motif21.motif 0.032685200000000005
Klf15	Pattern Name Modisco Significance metacluster_1/pattern_6 0.0373036	Pattern Name Homer Significance motif2.motif 0.00929096
Klf12	Pattern Name Modisco Significance metacluster_1/pattern_2 0.013247899999999998	Pattern Name Homer Significance motif2.motif 0.006602600000000001
Zfp281	Pattern Name Modisco Significance metacluster_1/pattern_2 0.023790000000000002	Pattern Name Homer Significance motif2.motif 0.0551359 motif21.motif 0.0565388
Elk4	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00102051	Pattern Name Homer Significance motif3.motif 0.00041282199999999997
Pbx3	Pattern Name Modisco Significance metacluster_1/pattern_3 9.910850000000001e-05	Pattern Name Homer Significance motif5.motif 0.00013246799999999998
E2f4	Pattern Name Modisco Significance metacluster_1/pattern_2 0.000451915	Pattern Name Homer Significance motif2.motif 0.000884135
Foxi1	Pattern Name Modisco Significance metacluster_1/pattern_3 7.29414e-06	Pattern Name Homer Significance motif5.motif 1.4247699999999999e-05
Klf6	Pattern Name Modisco Significance metacluster_1/pattern_2 0.000543511	Pattern Name Homer Significance motif2.motif 0.000358089
Spic	Pattern Name Modisco Significance metacluster_1/pattern_0 0.000341603	Pattern Name Homer Significance motif3.motif 0.00196013
Rela	Pattern Name Modisco Significance metacluster_1/pattern_13 0.000460477	Pattern Name Homer Significance motif21.motif 0.032685200000000005
Zfp42	Pattern Name Modisco Significance metacluster_1/pattern_6 0.0125897	Pattern Name Homer Significance motif12.motif 0.0317139
Irf1	Pattern Name Modisco Significance metacluster_1/pattern_0 0.0107783 metacluster_1/pattern_4 2.03996e-07	Pattern Name Homer Significance motif6.motif 0.0267757
Runx2	Pattern Name Modisco Significance metacluster_1/pattern_15 0.0121305	Pattern Name Homer Significance motif16.motif 0.0355727
Etv3	Pattern Name Modisco Significance metacluster_1/pattern_0 0.000341603	Pattern Name Homer Significance motif3.motif 5.1148999999999994e-05
Zbtb17	Pattern Name Modisco Significance metacluster_1/pattern_2 0.00638321 metacluster_1/pattern_6 0.00389239	Pattern Name Homer Significance motif2.motif 0.0040237
Ctcfl	Pattern Name Modisco Significance metacluster_1/pattern_1 3.71296e-08	Pattern Name Homer Significance motif1.motif 0.000765264 motif10.motif 0.00142291
Thap11	Pattern Name Modisco Significance metacluster_1/pattern_7 3.53169e-21	Pattern Name Homer Significance motif4.motif 3.8576099999999996e-07
Irf4	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00011544700000000001 metacluster_1/pattern_4 0.00305964	Pattern Name Homer Significance motif3.motif 0.0532383 motif6.motif 0.00818492
Irf8	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00011544700000000001 metacluster_1/pattern_4 4.0113300000000005e-09	Pattern Name Homer Significance motif3.motif 0.0219815 motif6.motif 0.00737537
Elf2	Pattern Name Modisco Significance metacluster_1/pattern_0 0.0148822	Pattern Name Homer Significance motif3.motif 0.0196955
Etv6	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00132879	Pattern Name Homer Significance motif3.motif 0.00669974
Ets1	Pattern Name Modisco Significance metacluster_1/pattern_0 0.000341603 metacluster_1/pattern_16 0.030679	Pattern Name Homer Significance motif3.motif 0.000979822
Zfp143	Pattern Name Modisco Significance metacluster_1/pattern_7 2.37105e-21	Pattern Name Homer Significance motif4.motif 3.5031100000000005e-07
Sp5	Pattern Name Modisco Significance metacluster_1/pattern_2 0.021063400000000003 metacluster_1/pattern_6 0.055335	Pattern Name Homer Significance motif2.motif 0.0488819 motif21.motif 0.032685200000000005
Spdef	Pattern Name Modisco Significance metacluster_1/pattern_0 0.0113325	Pattern Name Homer Significance motif3.motif 0.0119819
Etv4	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00119827	Pattern Name Homer Significance motif3.motif 0.00260769
Wt1	Pattern Name Modisco Significance metacluster_1/pattern_6 0.0117868	Pattern Name Homer Significance motif21.motif 0.032685200000000005
Yy1	Pattern Name Modisco Significance metacluster_1/pattern_6 1.5659700000000002e-05	Pattern Name Homer Significance motif12.motif 0.00239958
Etv5	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00102051	Pattern Name Homer Significance motif3.motif 2.0158699999999997e-05
XP_911724.4	Pattern Name Modisco Significance metacluster_1/pattern_0 0.000361547	Pattern Name Homer Significance motif3.motif 6.3682e-05
Elk1	Pattern Name Modisco Significance metacluster_1/pattern_0 0.0009295089999999999 metacluster_1/pattern_16 0.030679	Pattern Name Homer Significance motif3.motif 0.0005092769999999999
Elf1	Pattern Name Modisco Significance metacluster_1/pattern_0 0.000412196	Pattern Name Homer Significance motif3.motif 0.0007270810000000001
Spib	Pattern Name Modisco Significance metacluster_1/pattern_0 1.05599e-05 metacluster_1/pattern_4 1.2922699999999999e-05	Pattern Name Homer Significance motif3.motif 0.009469700000000001 motif6.motif 0.00818492
Klf7	Pattern Name Modisco Significance metacluster_1/pattern_2 0.000543511	Pattern Name Homer Significance motif2.motif 6.69554e-05
Prdm1	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00526754 metacluster_1/pattern_4 0.00713173	Pattern Name Homer Significance motif6.motif 0.0296557
Elk3	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00101496	Pattern Name Homer Significance motif3.motif 0.00041282199999999997
Pou2f2	Pattern Name Modisco Significance metacluster_1/pattern_9 0.016550400000000003	Pattern Name Homer Significance motif14.motif 0.000936014
Irf7	Pattern Name Modisco Significance metacluster_1/pattern_4 0.000427134	Pattern Name Homer Significance motif6.motif 0.0296557
Fev	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00843839	Pattern Name Homer Significance motif3.motif 0.0148345
Klf3	Pattern Name Modisco Significance metacluster_1/pattern_2 1.11983e-05 metacluster_1/pattern_6 0.019446599999999998	Pattern Name Homer Significance motif2.motif 2.73506e-05
Ctcf	Pattern Name Modisco Significance metacluster_1/pattern_1 5.07345e-13	Pattern Name Homer Significance motif1.motif 3.57369e-05 motif10.motif 0.0014479
Irf2	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00651541 metacluster_1/pattern_4 0.00454642	Pattern Name Homer Significance motif6.motif 0.046011800000000005
Sp3	Pattern Name Modisco Significance metacluster_1/pattern_2 1.11983e-05 metacluster_1/pattern_6 0.000153423	Pattern Name Homer Significance motif2.motif 6.69554e-05
Cbfb	Pattern Name Modisco Significance metacluster_1/pattern_15 0.00380536	Pattern Name Homer Significance motif16.motif 0.0355727
Etv2	Pattern Name Modisco Significance metacluster_1/pattern_0 0.000122387	Pattern Name Homer Significance motif3.motif 0.00394204
Nfyc	Pattern Name Modisco Significance metacluster_1/pattern_3 4.70738e-06	Pattern Name Homer Significance motif5.motif 1.8440200000000002e-06
Taf1	Pattern Name Modisco Significance metacluster_1/pattern_6 4.86772e-06	Pattern Name Homer Significance motif12.motif 0.000150972
Tbx2	Pattern Name Modisco Significance metacluster_1/pattern_7 2.1658200000000002e-13	Pattern Name Homer Significance motif4.motif 4.35655e-05
Pou5f1	Pattern Name Modisco Significance metacluster_1/pattern_9 0.047666900000000005 metacluster_1/pattern_12 0.0487596	Pattern Name Homer Significance motif14.motif 0.0128806
Elf4	Pattern Name Modisco Significance metacluster_1/pattern_0 0.000565791	Pattern Name Homer Significance motif3.motif 7.30802e-05
Nfyb	Pattern Name Modisco Significance metacluster_1/pattern_3 2.8055700000000004e-10	Pattern Name Homer Significance motif5.motif 7.31075e-08
Zbtb33	Pattern Name Modisco Significance metacluster_1/pattern_14 3.17398e-05	Pattern Name Homer Significance motif11.motif 0.00020854
Klf1	Pattern Name Modisco Significance metacluster_1/pattern_2 0.037675400000000005 metacluster_1/pattern_16 0.038762599999999994	Pattern Name Homer Significance motif2.motif 0.0313719
Klf8	Pattern Name Modisco Significance metacluster_1/pattern_2 0.000876898	Pattern Name Homer Significance motif2.motif 0.00012077399999999999
Erg	Pattern Name Modisco Significance metacluster_1/pattern_0 0.000341603	Pattern Name Homer Significance motif3.motif 0.000672457
Elf3	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00529812	Pattern Name Homer Significance motif3.motif 0.029907200000000002
Irf5	Pattern Name Modisco Significance metacluster_1/pattern_4 0.020232	Pattern Name Homer Significance motif3.motif 0.046382099999999996
Klf4	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0100985	Pattern Name Homer Significance motif2.motif 0.00511805
Nrf1	Pattern Name Modisco Significance metacluster_1/pattern_5 2.92104e-08	Pattern Name Homer Significance motif7.motif 1.50285e-06
Etv1	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00125082	Pattern Name Homer Significance motif3.motif 7.58517e-05
Ehf	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00207249	Pattern Name Homer Significance motif3.motif 0.018985
Irf9	Pattern Name Modisco Significance metacluster_1/pattern_4 0.00443644	Pattern Name Homer Significance motif6.motif 0.00737537
Sp2	Pattern Name Modisco Significance metacluster_1/pattern_2 2.7557099999999996e-06 metacluster_1/pattern_6 1.88024e-05	Pattern Name Homer Significance motif2.motif 0.00010420700000000001
Egr1	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0427607 metacluster_1/pattern_6 0.0516144	Pattern Name Homer Significance motif2.motif 0.0551359
E2f1	Pattern Name Modisco Significance metacluster_1/pattern_2 0.013247899999999998	Pattern Name Homer Significance motif2.motif 0.00295293
Egr2	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0402954 metacluster_1/pattern_6 0.03094	Pattern Name Homer Significance motif2.motif 0.0384721
Elf5	Pattern Name Modisco Significance metacluster_1/pattern_0 0.0114349	Pattern Name Homer Significance motif3.motif 0.00143093
Fli1	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00276623 metacluster_1/pattern_16 0.051778599999999994	Pattern Name Homer Significance motif3.motif 0.00143093
Runx3	Pattern Name Modisco Significance metacluster_1/pattern_15 0.00114286 metacluster_1/pattern_16 0.051778599999999994	Pattern Name Homer Significance motif16.motif 0.0306272
Gabpa	Pattern Name Modisco Significance metacluster_1/pattern_0 0.010125499999999999	Pattern Name Homer Significance motif3.motif 0.00669974

Unique TF-MoDISco TFs: #74

TF Name	Modisco	Homer
Hlf	Pattern Name Modisco Significance metacluster_1/pattern_10 0.0431293	Absent
Crem	Pattern Name Modisco Significance metacluster_1/pattern_8 0.00779946	Absent
Bach2	Pattern Name Modisco Significance metacluster_1/pattern_11 0.0036506	Absent
Creb1	Pattern Name Modisco Significance metacluster_1/pattern_8 0.00228994 metacluster_1/pattern_10 0.055678399999999996	Absent
Rfx1	Pattern Name Modisco Significance metacluster_1/pattern_12 2.74573e-09	Absent
Atf7	Pattern Name Modisco Significance metacluster_1/pattern_8 0.00040110199999999997	Absent
Bach1	Pattern Name Modisco Significance metacluster_1/pattern_11 0.00824996	Absent
Rfx7	Pattern Name Modisco Significance metacluster_1/pattern_12 0.0006464880000000001	Absent
Tfe3	Pattern Name Modisco Significance metacluster_1/pattern_10 0.00233603	Absent
Fosl1	Pattern Name Modisco Significance metacluster_1/pattern_8 0.022518700000000003 metacluster_1/pattern_11 0.033505599999999996	Absent
Atf2	Pattern Name Modisco Significance metacluster_1/pattern_8 0.00131932	Absent
Srebf1	Pattern Name Modisco Significance metacluster_1/pattern_10 0.00233603	Absent
Usf2	Pattern Name Modisco Significance metacluster_1/pattern_6 0.0432613 metacluster_1/pattern_8 0.000151178 metacluster_1/pattern_10 0.00269236	Absent
Mafk	Pattern Name Modisco Significance metacluster_1/pattern_11 0.0513592	Absent
Jdp2	Pattern Name Modisco Significance metacluster_1/pattern_8 0.00117962 metacluster_1/pattern_11 3.25792e-05	Absent
Batf	Pattern Name Modisco Significance metacluster_1/pattern_11 0.0084097	Absent
Fos	Pattern Name Modisco Significance metacluster_1/pattern_11 3.3082300000000003e-06	Absent
Jun	Pattern Name Modisco Significance metacluster_1/pattern_8 0.0187492 metacluster_1/pattern_11 0.0234715	Absent
Rxrb	Pattern Name Modisco Significance metacluster_1/pattern_8 0.0481574	Absent
Relb	Pattern Name Modisco Significance metacluster_1/pattern_13 0.000162907	Absent
Creb5	Pattern Name Modisco Significance metacluster_1/pattern_8 0.00285035	Absent
Usf1	Pattern Name Modisco Significance metacluster_1/pattern_10 0.00320995	Absent
Mef2c	Pattern Name Modisco Significance metacluster_1/pattern_18 2.96423e-09	Absent
Mitf	Pattern Name Modisco Significance metacluster_1/pattern_10 0.00159205	Absent
Arntl	Pattern Name Modisco Significance metacluster_1/pattern_10 0.00526972	Absent
Rel	Pattern Name Modisco Significance metacluster_1/pattern_13 0.0415722	Absent
Arnt	Pattern Name Modisco Significance metacluster_1/pattern_10 0.0368857	Absent
Zscan10	Pattern Name Modisco Significance metacluster_1/pattern_4 0.036408800000000005	Absent
Egr3	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0523486	Absent
Nfil3	Pattern Name Modisco Significance metacluster_1/pattern_8 0.037084	Absent
Clock	Pattern Name Modisco Significance metacluster_1/pattern_10 0.0368857	Absent
Mafa	Pattern Name Modisco Significance metacluster_1/pattern_11 0.039148	Absent
Mycn	Pattern Name Modisco Significance metacluster_1/pattern_10 0.050760900000000005	Absent
Srebf2	Pattern Name Modisco Significance metacluster_1/pattern_10 0.00320874	Absent
Nfkb2	Pattern Name Modisco Significance metacluster_1/pattern_13 2.8756e-07	Absent
Dbp	Pattern Name Modisco Significance metacluster_1/pattern_10 0.0448284	Absent
Pou2f1	Pattern Name Modisco Significance metacluster_1/pattern_9 0.047666900000000005	Absent
Tfeb	Pattern Name Modisco Significance metacluster_1/pattern_10 0.00117033	Absent
Npas2	Pattern Name Modisco Significance metacluster_1/pattern_10 0.00233603	Absent
Stat1	Pattern Name Modisco Significance metacluster_1/pattern_4 0.000534439	Absent
Rfx3	Pattern Name Modisco Significance metacluster_1/pattern_12 0.00149968	Absent
Mxi1	Pattern Name Modisco Significance metacluster_1/pattern_6 0.03094	Absent
Fosl2	Pattern Name Modisco Significance metacluster_1/pattern_8 0.00779946 metacluster_1/pattern_11 0.000123807	Absent
Xbp1	Pattern Name Modisco Significance metacluster_1/pattern_10 0.0346539	Absent
Max	Pattern Name Modisco Significance metacluster_1/pattern_10 0.0571957	Absent
Irf6	Pattern Name Modisco Significance metacluster_1/pattern_4 0.05710610000000001	Absent
Atf3	Pattern Name Modisco Significance metacluster_1/pattern_8 0.00498601 metacluster_1/pattern_11 3.25792e-05	Absent
Nfe2l2	Pattern Name Modisco Significance metacluster_1/pattern_11 0.00691495	Absent
Tfec	Pattern Name Modisco Significance metacluster_1/pattern_10 0.00233603	Absent
Bhlhe40	Pattern Name Modisco Significance metacluster_1/pattern_10 0.0101477	Absent
Gfi1b	Pattern Name Modisco Significance metacluster_1/pattern_15 0.0487916	Absent
Fosb	Pattern Name Modisco Significance metacluster_1/pattern_11 3.3082300000000003e-06	Absent
Zfp740	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0421918	Absent
Atf1	Pattern Name Modisco Significance metacluster_1/pattern_8 0.0139219 metacluster_1/pattern_10 0.0123887	Absent
Creb3l2	Pattern Name Modisco Significance metacluster_1/pattern_10 0.04252569999999999	Absent
Rfx2	Pattern Name Modisco Significance metacluster_1/pattern_12 0.0339096	Absent
Maz	Pattern Name Modisco Significance metacluster_1/pattern_6 0.0131961	Absent
Mef2a	Pattern Name Modisco Significance metacluster_1/pattern_18 6.29787e-05	Absent
Rfx6	Pattern Name Modisco Significance metacluster_1/pattern_12 0.00128474	Absent
Mef2d	Pattern Name Modisco Significance metacluster_1/pattern_18 9.12659e-14	Absent
Nfkb1	Pattern Name Modisco Significance metacluster_1/pattern_13 5.8070600000000006e-05	Absent
Sox2	Pattern Name Modisco Significance metacluster_1/pattern_12 0.0448765	Absent
Mlx	Pattern Name Modisco Significance metacluster_1/pattern_10 0.0221547	Absent
Tcfl5	Pattern Name Modisco Significance metacluster_1/pattern_10 0.00418764	Absent
Irf3	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00559299 metacluster_1/pattern_4 0.026595599999999997	Absent
Stat2	Pattern Name Modisco Significance metacluster_1/pattern_4 0.00038583300000000003	Absent
Nfe2	Pattern Name Modisco Significance metacluster_1/pattern_11 0.00611872	Absent
Rfx4	Pattern Name Modisco Significance metacluster_1/pattern_12 8.62935e-05	Absent
Tef	Pattern Name Modisco Significance metacluster_1/pattern_8 0.05926	Absent
Bhlhe41	Pattern Name Modisco Significance metacluster_1/pattern_10 0.016400099999999997	Absent
Jund	Pattern Name Modisco Significance metacluster_1/pattern_11 0.00316012	Absent
Mlxip	Pattern Name Modisco Significance metacluster_1/pattern_10 0.0537062	Absent
Junb	Pattern Name Modisco Significance metacluster_1/pattern_11 0.014079099999999999	Absent
Zfx	Pattern Name Modisco Significance metacluster_1/pattern_2 0.037675400000000005 metacluster_1/pattern_6 0.00175184 metacluster_1/pattern_8 0.0164772	Absent

Unique Homer TFs: #5

TF Name	Modisco	Homer
E2f7	Absent	Pattern Name Homer Significance motif2.motif 0.021162
E2f6	Absent	Pattern Name Homer Significance motif2.motif 0.01964
Sall4	Absent	Pattern Name Homer Significance motif21.motif 0.0565388
Sp100	Absent	Pattern Name Homer Significance motif9.motif 0.0255213
Hmga2	Absent	Pattern Name Homer Significance motif9.motif 0.021177900000000003