# Parameters
data_name = "TEff_SPLND;CD8+;A;GEO"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
tomtom_report_root = "http://mitra.stanford.edu/kundaje/msharmin/report/tomtom_outs/cells"
task_dir = "task_117-naivegw"
perf_file = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/fineFactorized/task_117-naivegw/NaiveauPRC.txt"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
reportfile = "/mnt/lab_data/kundaje/msharmin/annotations/filtering samples_MS2.xlsx"
sheetname = "filter23"

from matlas.reports import display_metadata

load data from labcluster

Using TensorFlow backend.
2019-08-30 19:06:39,536 [WARNING] git-lfs not installed

display_metadata(data_name, perf_file, reportfile, sheetname)

Sample Information

MetaData Name	Description
Cell type	Spleen CD8+ T cell (Effector)
Cell Group	T cells
Experiment Name	ATAC
Experiment Group	GEO

Pipeline Output

replicate	Naïve overlap peaks	IDR peaks	TSS enrichment (< 8 is very poor <10 is low)	Final number of unique mapping, dup-filtered, chrM filtered reads	Number of reads in called peak regions	Fraction of reads in called peak regions	Number of reads in promoter regions	Fraction of reads in promoter regions	Number of reads in enhancer regions	Fraction of reads in enhancer regions
rep1	115658	90804	16.9754	22746090	6367736	0.2802	4407346	0.1939	8227448	0.362
rep2	115658	90804	17.3994	19209048	5057053	0.2635	3600825	0.1876	6919406	0.3606
rep3	115658	90804	15.4441	23769809	7115938	0.2996	4723321	0.1989	8588253	0.3616

Modelling Metadata

Metric	Value
auPRC	0.5731
Calibrated Recall at 50% FDR	0.218
Number of Positive Examples in Test Data	104036
Number of Negative Examples in Test Data	7966815
Imbalance Ratio in Test Data	0.0129
Test Chromosomes	chr2, chr3, chr19

from matlas.reports import display_paiwise_pattern_comparison
from matlas.reports import display_denovo_patterns

display_denovo_patterns(data_name, modisco_root=modisco_root)

TF-MoDISco is using the TensorFlow backend.

The following two links show list of Denovo Patterns and corresponding Motifs discovered by TF-MoDISco

Click here for Denovo Patterns by TF-MoDISco: #23

Pattern Name	TF Name(s)	Modisco
metacluster_1/pattern_0 # seqlets: 5766 SequenceContrib ScoresHyp_Contrib Scores	Erg, Ets1, Fli1, Etv4, Etv2, Elk1, Elk4, Gabpa, Etv5, Spi1, Elk3, Etv6, Fev, XP_911724.4, Etv3, Etv1, Elf2, Elf4, Elf1, Spib, Ehf, Elf5, Elf3, Spdef, Irf8, Stat3, Irf4, Spic, Stat4, Stat6, Zscan10
metacluster_1/pattern_1 # seqlets: 4546 SequenceContrib ScoresHyp_Contrib Scores	Ctcf, Ctcfl
metacluster_1/pattern_2 # seqlets: 2446 SequenceContrib ScoresHyp_Contrib Scores	Sp4, Klf3, Sp2, Sp3, Sp1, Klf6, Klf4, Klf7, E2f4, Klf1, Klf8, Klf12, Egr1, Egr2, Zbtb17, Klf5, E2f1, Sp5, Zfp281, Zfp740, Zfx, Egr3
metacluster_1/pattern_3 # seqlets: 2142 SequenceContrib ScoresHyp_Contrib Scores	Irf1, Irf2, Stat1, Irf7, Prdm1, Stat2, Irf3, Irf9, Batf3
metacluster_1/pattern_4 # seqlets: 1233 SequenceContrib ScoresHyp_Contrib Scores	Nfyb, Nfyc, Nfya, Foxi1, Pbx3
metacluster_1/pattern_5 # seqlets: 1220 SequenceContrib ScoresHyp_Contrib Scores	Nrf1
metacluster_1/pattern_6 # seqlets: 1147 SequenceContrib ScoresHyp_Contrib Scores	Runx1, Runx2, Runx3, Cbfb, Gfi1b
metacluster_1/pattern_7 # seqlets: 852 SequenceContrib ScoresHyp_Contrib Scores	Fos, Jund, Fosl2, Fosl1, Fosb, Jdp2, Batf, Junb, Jun, Atf3, Bach2, Nfe2l2, Bach1, Nfe2, Mafa, Mafk
metacluster_1/pattern_8 # seqlets: 711 SequenceContrib ScoresHyp_Contrib Scores	Creb1, Atf2, Usf2, Atf7, Crem, Creb5, Atf1, Nfil3, Tef
metacluster_1/pattern_9 # seqlets: 692 SequenceContrib ScoresHyp_Contrib Scores
metacluster_1/pattern_10 # seqlets: 574 SequenceContrib ScoresHyp_Contrib Scores	Taf1, Yy1, Zfp42, Rfx1, Wt1, Maz, Mxi1, Klf15
metacluster_1/pattern_11 # seqlets: 564 SequenceContrib ScoresHyp_Contrib Scores	Zfp143, Thap11, Tbx2
metacluster_1/pattern_12 # seqlets: 414 SequenceContrib ScoresHyp_Contrib Scores	Usf1, Arntl, Tfe3, Tfeb, Tfec, Mitf, Clock, Arnt, Srebf1, Bhlhe40, Mlx, Npas2, Srebf2, Mycn, Tcfl5, Max, Creb3l2, Myc, Bhlhe41, Hlf, Xbp1, Nr1h4
metacluster_1/pattern_13 # seqlets: 325 SequenceContrib ScoresHyp_Contrib Scores
metacluster_1/pattern_14 # seqlets: 305 SequenceContrib ScoresHyp_Contrib Scores	Rfx2, Rfx3, Rfx4, Rfx7, Rfx6
metacluster_1/pattern_15 # seqlets: 293 SequenceContrib ScoresHyp_Contrib Scores	Nfkb2, Nfkb1, Rela, Relb, Rel
metacluster_1/pattern_16 # seqlets: 268 SequenceContrib ScoresHyp_Contrib Scores	Tbx20, Tbr1, Tbx3, Tbx4, Eomes, Tbx5, Tbx1, Tbx21, T
metacluster_1/pattern_17 # seqlets: 194 SequenceContrib ScoresHyp_Contrib Scores	Ets2
metacluster_1/pattern_18 # seqlets: 128 SequenceContrib ScoresHyp_Contrib Scores	Zbtb33
metacluster_1/pattern_19 # seqlets: 73 SequenceContrib ScoresHyp_Contrib Scores	Pou2f2
metacluster_1/pattern_20 # seqlets: 49 SequenceContrib ScoresHyp_Contrib Scores	Mef2c, Mef2d, Mef2a
metacluster_1/pattern_21 # seqlets: 48 SequenceContrib ScoresHyp_Contrib Scores
metacluster_1/pattern_22 # seqlets: 47 SequenceContrib ScoresHyp_Contrib Scores

Click here for Motifs by TF-MoDISco: #158

TF Name	Pattern(s)
Erg	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00105885 metacluster_1/pattern_17 0.032836199999999996
Ets1	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00108625 metacluster_1/pattern_17 0.00610875
Fli1	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00105885 metacluster_1/pattern_17 0.032836199999999996
Etv4	Pattern Name Modisco Significance metacluster_1/pattern_0 0.0013952
Etv2	Pattern Name Modisco Significance metacluster_1/pattern_0 5.78668e-05 metacluster_1/pattern_17 0.00610875
Elk1	Pattern Name Modisco Significance metacluster_1/pattern_0 0.0013952
Elk4	Pattern Name Modisco Significance metacluster_1/pattern_0 0.0013952 metacluster_1/pattern_17 0.0455224
Gabpa	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00156879
Etv5	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00044619999999999995
Spi1	Pattern Name Modisco Significance metacluster_1/pattern_0 0.053787 metacluster_1/pattern_17 0.037743599999999995
Elk3	Pattern Name Modisco Significance metacluster_1/pattern_0 0.0013952
Etv6	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00105885 metacluster_1/pattern_17 0.032456599999999995
Fev	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00105885
XP_911724.4	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00121052
Etv3	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00135288
Etv1	Pattern Name Modisco Significance metacluster_1/pattern_0 0.0013952
Elf2	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00633558 metacluster_1/pattern_17 0.032836199999999996
Elf4	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00452657
Elf1	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00494849
Spib	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00494849 metacluster_1/pattern_3 0.00160659
Ehf	Pattern Name Modisco Significance metacluster_1/pattern_0 0.0123465 metacluster_1/pattern_17 0.051529700000000005
Elf5	Pattern Name Modisco Significance metacluster_1/pattern_0 0.029262 metacluster_1/pattern_17 0.0286869
Elf3	Pattern Name Modisco Significance metacluster_1/pattern_0 0.0230334 metacluster_1/pattern_17 0.032836199999999996
Spdef	Pattern Name Modisco Significance metacluster_1/pattern_0 0.022224599999999997
Irf8	Pattern Name Modisco Significance metacluster_1/pattern_0 0.024263099999999996 metacluster_1/pattern_3 2.6811400000000003e-06
Stat3	Pattern Name Modisco Significance metacluster_1/pattern_0 0.0416451
Irf4	Pattern Name Modisco Significance metacluster_1/pattern_0 0.026176299999999996 metacluster_1/pattern_3 0.0145683
Spic	Pattern Name Modisco Significance metacluster_1/pattern_0 0.055913199999999996
Stat4	Pattern Name Modisco Significance metacluster_1/pattern_0 0.0383115
Stat6	Pattern Name Modisco Significance metacluster_1/pattern_0 0.0504866
Zscan10	Pattern Name Modisco Significance metacluster_1/pattern_0 0.055913199999999996
Ctcf	Pattern Name Modisco Significance metacluster_1/pattern_1 1.1752e-15
Ctcfl	Pattern Name Modisco Significance metacluster_1/pattern_1 1.20507e-07 metacluster_1/pattern_18 0.0240048 metacluster_1/pattern_21 0.024807
Sp4	Pattern Name Modisco Significance metacluster_1/pattern_2 0.00184572 metacluster_1/pattern_10 0.0459359 metacluster_1/pattern_13 0.00348793
Klf3	Pattern Name Modisco Significance metacluster_1/pattern_2 4.1097199999999995e-06 metacluster_1/pattern_10 0.0232632 metacluster_1/pattern_13 0.037779599999999997 metacluster_1/pattern_18 0.051426599999999996 metacluster_1/pattern_21 0.027312599999999996
Sp2	Pattern Name Modisco Significance metacluster_1/pattern_2 4.1097199999999995e-06 metacluster_1/pattern_10 4.73659e-05 metacluster_1/pattern_12 0.00453739 metacluster_1/pattern_18 2.34227e-05 metacluster_1/pattern_21 0.000143322
Sp3	Pattern Name Modisco Significance metacluster_1/pattern_2 7.11217e-06 metacluster_1/pattern_10 0.00032622900000000004 metacluster_1/pattern_12 0.0410894 metacluster_1/pattern_18 0.000594895 metacluster_1/pattern_21 0.00227449
Sp1	Pattern Name Modisco Significance metacluster_1/pattern_2 0.000523704 metacluster_1/pattern_10 0.000286318 metacluster_1/pattern_12 0.027908099999999995 metacluster_1/pattern_18 0.000967058 metacluster_1/pattern_21 0.00143866
Klf6	Pattern Name Modisco Significance metacluster_1/pattern_2 0.000308936
Klf4	Pattern Name Modisco Significance metacluster_1/pattern_2 0.00817404 metacluster_1/pattern_13 0.00127611
Klf7	Pattern Name Modisco Significance metacluster_1/pattern_2 0.000470504 metacluster_1/pattern_13 0.00196064
E2f4	Pattern Name Modisco Significance metacluster_1/pattern_2 0.000485782
Klf1	Pattern Name Modisco Significance metacluster_1/pattern_2 0.027011200000000003 metacluster_1/pattern_13 0.000676702
Klf8	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0006566539999999999 metacluster_1/pattern_13 0.000676702
Klf12	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0109603 metacluster_1/pattern_13 0.00348793
Egr1	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0373574 metacluster_1/pattern_10 0.054229999999999993
Egr2	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0426352 metacluster_1/pattern_10 0.036443
Zbtb17	Pattern Name Modisco Significance metacluster_1/pattern_2 0.00817404 metacluster_1/pattern_10 0.00933938 metacluster_1/pattern_21 0.027312599999999996
Klf5	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0111205 metacluster_1/pattern_13 0.0243688
E2f1	Pattern Name Modisco Significance metacluster_1/pattern_2 0.014016999999999998
Sp5	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0157753
Zfp281	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0289793
Zfp740	Pattern Name Modisco Significance metacluster_1/pattern_2 0.048410800000000004
Zfx	Pattern Name Modisco Significance metacluster_1/pattern_2 0.05372819999999999 metacluster_1/pattern_5 0.0219498 metacluster_1/pattern_10 0.00388055 metacluster_1/pattern_12 0.038655699999999994 metacluster_1/pattern_18 0.00056852 metacluster_1/pattern_21 0.027312599999999996
Egr3	Pattern Name Modisco Significance metacluster_1/pattern_2 0.05372819999999999
Irf1	Pattern Name Modisco Significance metacluster_1/pattern_3 2.74275e-16
Irf2	Pattern Name Modisco Significance metacluster_1/pattern_3 0.0006688210000000001
Stat1	Pattern Name Modisco Significance metacluster_1/pattern_3 1.7377e-05
Irf7	Pattern Name Modisco Significance metacluster_1/pattern_3 5.5612600000000004e-05
Prdm1	Pattern Name Modisco Significance metacluster_1/pattern_3 0.000143669
Stat2	Pattern Name Modisco Significance metacluster_1/pattern_3 0.00026068900000000004
Irf3	Pattern Name Modisco Significance metacluster_1/pattern_3 0.000425845
Irf9	Pattern Name Modisco Significance metacluster_1/pattern_3 0.00255515
Batf3	Pattern Name Modisco Significance metacluster_1/pattern_3 0.00700737
Nfyb	Pattern Name Modisco Significance metacluster_1/pattern_4 1.5315899999999998e-10
Nfyc	Pattern Name Modisco Significance metacluster_1/pattern_4 5.668680000000001e-06
Nfya	Pattern Name Modisco Significance metacluster_1/pattern_4 7.88984e-06
Foxi1	Pattern Name Modisco Significance metacluster_1/pattern_4 8.73568e-06
Pbx3	Pattern Name Modisco Significance metacluster_1/pattern_4 0.000102535
Nrf1	Pattern Name Modisco Significance metacluster_1/pattern_5 7.5504199999999994e-06
Runx1	Pattern Name Modisco Significance metacluster_1/pattern_6 0.00043428900000000003
Runx2	Pattern Name Modisco Significance metacluster_1/pattern_6 0.00782392
Runx3	Pattern Name Modisco Significance metacluster_1/pattern_6 0.00159792
Cbfb	Pattern Name Modisco Significance metacluster_1/pattern_6 0.00385962
Gfi1b	Pattern Name Modisco Significance metacluster_1/pattern_6 0.0561471
Fos	Pattern Name Modisco Significance metacluster_1/pattern_7 1.1455999999999998e-05
Jund	Pattern Name Modisco Significance metacluster_1/pattern_7 0.00381281
Fosl2	Pattern Name Modisco Significance metacluster_1/pattern_7 4.02752e-05 metacluster_1/pattern_8 0.00793436
Fosl1	Pattern Name Modisco Significance metacluster_1/pattern_7 0.0458101 metacluster_1/pattern_8 0.0327968
Fosb	Pattern Name Modisco Significance metacluster_1/pattern_7 2.0495300000000003e-05
Jdp2	Pattern Name Modisco Significance metacluster_1/pattern_7 2.34583e-05 metacluster_1/pattern_8 0.000757764 metacluster_1/pattern_12 0.0362566
Batf	Pattern Name Modisco Significance metacluster_1/pattern_7 0.00406688
Junb	Pattern Name Modisco Significance metacluster_1/pattern_7 0.0336767
Jun	Pattern Name Modisco Significance metacluster_1/pattern_7 0.037275800000000005 metacluster_1/pattern_8 0.024410499999999998
Atf3	Pattern Name Modisco Significance metacluster_1/pattern_7 4.02752e-05 metacluster_1/pattern_8 0.00442405
Bach2	Pattern Name Modisco Significance metacluster_1/pattern_7 0.00225378
Nfe2l2	Pattern Name Modisco Significance metacluster_1/pattern_7 0.00406688
Bach1	Pattern Name Modisco Significance metacluster_1/pattern_7 0.00381281
Nfe2	Pattern Name Modisco Significance metacluster_1/pattern_7 0.00381281
Mafa	Pattern Name Modisco Significance metacluster_1/pattern_7 0.0526577
Mafk	Pattern Name Modisco Significance metacluster_1/pattern_7 0.0532052
Creb1	Pattern Name Modisco Significance metacluster_1/pattern_8 0.00192861 metacluster_1/pattern_12 0.0362566
Atf2	Pattern Name Modisco Significance metacluster_1/pattern_8 0.000757764 metacluster_1/pattern_12 0.0266683
Usf2	Pattern Name Modisco Significance metacluster_1/pattern_8 0.00014903600000000001 metacluster_1/pattern_10 0.0524073 metacluster_1/pattern_12 0.00456612 metacluster_1/pattern_18 0.051426599999999996 metacluster_1/pattern_21 0.00654787
Atf7	Pattern Name Modisco Significance metacluster_1/pattern_8 0.000259131 metacluster_1/pattern_12 0.018153299999999997
Crem	Pattern Name Modisco Significance metacluster_1/pattern_8 0.00534152
Creb5	Pattern Name Modisco Significance metacluster_1/pattern_8 0.0010744
Atf1	Pattern Name Modisco Significance metacluster_1/pattern_8 0.0355037 metacluster_1/pattern_12 0.0356423
Nfil3	Pattern Name Modisco Significance metacluster_1/pattern_8 0.0223257
Tef	Pattern Name Modisco Significance metacluster_1/pattern_8 0.040711199999999996
Taf1	Pattern Name Modisco Significance metacluster_1/pattern_10 5.631269999999999e-06
Yy1	Pattern Name Modisco Significance metacluster_1/pattern_10 6.61642e-06
Zfp42	Pattern Name Modisco Significance metacluster_1/pattern_10 0.0115882
Rfx1	Pattern Name Modisco Significance metacluster_1/pattern_10 0.0115882 metacluster_1/pattern_12 0.0490994 metacluster_1/pattern_14 9.33198e-08 metacluster_1/pattern_21 0.00432299
Wt1	Pattern Name Modisco Significance metacluster_1/pattern_10 0.0181055
Maz	Pattern Name Modisco Significance metacluster_1/pattern_10 0.022177799999999998
Mxi1	Pattern Name Modisco Significance metacluster_1/pattern_10 0.0459359 metacluster_1/pattern_12 0.00165067 metacluster_1/pattern_21 0.024453700000000002
Klf15	Pattern Name Modisco Significance metacluster_1/pattern_10 0.052564599999999996
Zfp143	Pattern Name Modisco Significance metacluster_1/pattern_11 8.657790000000001e-21
Thap11	Pattern Name Modisco Significance metacluster_1/pattern_11 1.11778e-20
Tbx2	Pattern Name Modisco Significance metacluster_1/pattern_11 3.68462e-14 metacluster_1/pattern_16 0.00025189200000000003
Usf1	Pattern Name Modisco Significance metacluster_1/pattern_12 0.0245712
Arntl	Pattern Name Modisco Significance metacluster_1/pattern_12 0.005443600000000001
Tfe3	Pattern Name Modisco Significance metacluster_1/pattern_12 0.000936961
Tfeb	Pattern Name Modisco Significance metacluster_1/pattern_12 0.000477703
Tfec	Pattern Name Modisco Significance metacluster_1/pattern_12 0.00108029
Mitf	Pattern Name Modisco Significance metacluster_1/pattern_12 0.000552952
Clock	Pattern Name Modisco Significance metacluster_1/pattern_12 0.0200681
Arnt	Pattern Name Modisco Significance metacluster_1/pattern_12 0.053257000000000006
Srebf1	Pattern Name Modisco Significance metacluster_1/pattern_12 0.054670800000000006
Bhlhe40	Pattern Name Modisco Significance metacluster_1/pattern_12 0.020655
Mlx	Pattern Name Modisco Significance metacluster_1/pattern_12 0.00805805
Npas2	Pattern Name Modisco Significance metacluster_1/pattern_12 0.00342505
Srebf2	Pattern Name Modisco Significance metacluster_1/pattern_12 0.00814911
Mycn	Pattern Name Modisco Significance metacluster_1/pattern_12 0.013093200000000001
Tcfl5	Pattern Name Modisco Significance metacluster_1/pattern_12 0.015349000000000002
Max	Pattern Name Modisco Significance metacluster_1/pattern_12 0.0200681
Creb3l2	Pattern Name Modisco Significance metacluster_1/pattern_12 0.0284563
Myc	Pattern Name Modisco Significance metacluster_1/pattern_12 0.0284563
Bhlhe41	Pattern Name Modisco Significance metacluster_1/pattern_12 0.0334866
Hlf	Pattern Name Modisco Significance metacluster_1/pattern_12 0.0362566
Xbp1	Pattern Name Modisco Significance metacluster_1/pattern_12 0.0497457
Nr1h4	Pattern Name Modisco Significance metacluster_1/pattern_12 0.054670800000000006
Rfx2	Pattern Name Modisco Significance metacluster_1/pattern_14 9.33198e-08
Rfx3	Pattern Name Modisco Significance metacluster_1/pattern_14 0.0136346
Rfx4	Pattern Name Modisco Significance metacluster_1/pattern_14 4.05029e-05
Rfx7	Pattern Name Modisco Significance metacluster_1/pattern_14 0.0061936000000000005
Rfx6	Pattern Name Modisco Significance metacluster_1/pattern_14 0.0161846
Nfkb2	Pattern Name Modisco Significance metacluster_1/pattern_15 1.24371e-05
Nfkb1	Pattern Name Modisco Significance metacluster_1/pattern_15 7.13603e-05
Rela	Pattern Name Modisco Significance metacluster_1/pattern_15 0.0006744230000000001
Relb	Pattern Name Modisco Significance metacluster_1/pattern_15 0.000965913
Rel	Pattern Name Modisco Significance metacluster_1/pattern_15 0.0106152
Tbx20	Pattern Name Modisco Significance metacluster_1/pattern_16 9.38044e-05
Tbr1	Pattern Name Modisco Significance metacluster_1/pattern_16 0.00025189200000000003
Tbx3	Pattern Name Modisco Significance metacluster_1/pattern_16 0.0210716
Tbx4	Pattern Name Modisco Significance metacluster_1/pattern_16 0.0007254960000000001
Eomes	Pattern Name Modisco Significance metacluster_1/pattern_16 0.000734803
Tbx5	Pattern Name Modisco Significance metacluster_1/pattern_16 0.0161958
Tbx1	Pattern Name Modisco Significance metacluster_1/pattern_16 0.0009613310000000001
Tbx21	Pattern Name Modisco Significance metacluster_1/pattern_16 0.00104642
T	Pattern Name Modisco Significance metacluster_1/pattern_16 0.0337471
Ets2	Pattern Name Modisco Significance metacluster_1/pattern_17 0.0455224
Zbtb33	Pattern Name Modisco Significance metacluster_1/pattern_18 2.34227e-05
Pou2f2	Pattern Name Modisco Significance metacluster_1/pattern_19 0.000164841
Mef2c	Pattern Name Modisco Significance metacluster_1/pattern_20 6.7792e-07
Mef2d	Pattern Name Modisco Significance metacluster_1/pattern_20 1.74266e-06
Mef2a	Pattern Name Modisco Significance metacluster_1/pattern_20 0.00022655

display_paiwise_pattern_comparison(data_name, modisco_root, homer_root)

Number of CISBP TFs obtained by TF-MoDISco and Homer

Shared TFs between TF-MoDISco and Homer: #65

TF Name	Modisco	Homer
Etv4	Pattern Name Modisco Significance metacluster_1/pattern_0 0.0013952	Pattern Name Homer Significance motif2.motif 0.00097905
Irf7	Pattern Name Modisco Significance metacluster_1/pattern_3 5.5612600000000004e-05	Pattern Name Homer Significance motif7.motif 0.00032167299999999997
Elf2	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00633558 metacluster_1/pattern_17 0.032836199999999996	Pattern Name Homer Significance motif2.motif 0.012748299999999999
Klf12	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0109603 metacluster_1/pattern_13 0.00348793	Pattern Name Homer Significance motif3.motif 0.0111515
Gabpa	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00156879	Pattern Name Homer Significance motif2.motif 0.000988633
Egr2	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0426352 metacluster_1/pattern_10 0.036443	Pattern Name Homer Significance motif3.motif 0.0578974
Etv5	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00044619999999999995	Pattern Name Homer Significance motif2.motif 0.000114882
Fev	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00105885	Pattern Name Homer Significance motif2.motif 0.000741
Spi1	Pattern Name Modisco Significance metacluster_1/pattern_0 0.053787 metacluster_1/pattern_17 0.037743599999999995	Pattern Name Homer Significance motif2.motif 0.0106498
Spib	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00494849 metacluster_1/pattern_3 0.00160659	Pattern Name Homer Significance motif2.motif 0.040612
Stat2	Pattern Name Modisco Significance metacluster_1/pattern_3 0.00026068900000000004	Pattern Name Homer Significance motif7.motif 0.0256722
Ctcf	Pattern Name Modisco Significance metacluster_1/pattern_1 1.1752e-15	Pattern Name Homer Significance motif1.motif 0.000491724
Klf7	Pattern Name Modisco Significance metacluster_1/pattern_2 0.000470504 metacluster_1/pattern_13 0.00196064	Pattern Name Homer Significance motif3.motif 0.000446812
Elf1	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00494849	Pattern Name Homer Significance motif2.motif 0.00097905
Elk1	Pattern Name Modisco Significance metacluster_1/pattern_0 0.0013952	Pattern Name Homer Significance motif2.motif 0.000988633
Yy1	Pattern Name Modisco Significance metacluster_1/pattern_10 6.61642e-06	Pattern Name Homer Significance motif16.motif 0.0005286690000000001
Elk4	Pattern Name Modisco Significance metacluster_1/pattern_0 0.0013952 metacluster_1/pattern_17 0.0455224	Pattern Name Homer Significance motif2.motif 0.00097905
Zfx	Pattern Name Modisco Significance metacluster_1/pattern_2 0.05372819999999999 metacluster_1/pattern_5 0.0219498 metacluster_1/pattern_10 0.00388055 metacluster_1/pattern_12 0.038655699999999994 metacluster_1/pattern_18 0.00056852 metacluster_1/pattern_21 0.027312599999999996	Pattern Name Homer Significance motif3.motif 0.0578974
Tbx2	Pattern Name Modisco Significance metacluster_1/pattern_11 3.68462e-14 metacluster_1/pattern_16 0.00025189200000000003	Pattern Name Homer Significance motif6.motif 3.94674e-05
Stat4	Pattern Name Modisco Significance metacluster_1/pattern_0 0.0383115	Pattern Name Homer Significance motif2.motif 0.0382579
Klf3	Pattern Name Modisco Significance metacluster_1/pattern_2 4.1097199999999995e-06 metacluster_1/pattern_10 0.0232632 metacluster_1/pattern_13 0.037779599999999997 metacluster_1/pattern_18 0.051426599999999996 metacluster_1/pattern_21 0.027312599999999996	Pattern Name Homer Significance motif3.motif 1.45874e-05
Irf1	Pattern Name Modisco Significance metacluster_1/pattern_3 2.74275e-16	Pattern Name Homer Significance motif7.motif 0.0167153
Taf1	Pattern Name Modisco Significance metacluster_1/pattern_10 5.631269999999999e-06	Pattern Name Homer Significance motif16.motif 4.03091e-05
Irf2	Pattern Name Modisco Significance metacluster_1/pattern_3 0.0006688210000000001	Pattern Name Homer Significance motif7.motif 0.0493396
Thap11	Pattern Name Modisco Significance metacluster_1/pattern_11 1.11778e-20	Pattern Name Homer Significance motif6.motif 7.394410000000001e-06
Spdef	Pattern Name Modisco Significance metacluster_1/pattern_0 0.022224599999999997	Pattern Name Homer Significance motif2.motif 0.015083000000000001
Etv1	Pattern Name Modisco Significance metacluster_1/pattern_0 0.0013952	Pattern Name Homer Significance motif2.motif 0.00131409
Klf15	Pattern Name Modisco Significance metacluster_1/pattern_10 0.052564599999999996	Pattern Name Homer Significance motif3.motif 0.0578974
Elk3	Pattern Name Modisco Significance metacluster_1/pattern_0 0.0013952	Pattern Name Homer Significance motif2.motif 0.00097905
Klf5	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0111205 metacluster_1/pattern_13 0.0243688	Pattern Name Homer Significance motif3.motif 0.0155721
Sp3	Pattern Name Modisco Significance metacluster_1/pattern_2 7.11217e-06 metacluster_1/pattern_10 0.00032622900000000004 metacluster_1/pattern_12 0.0410894 metacluster_1/pattern_18 0.000594895 metacluster_1/pattern_21 0.00227449	Pattern Name Homer Significance motif3.motif 1.5624200000000002e-05
Egr1	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0373574 metacluster_1/pattern_10 0.054229999999999993	Pattern Name Homer Significance motif3.motif 0.0155721
Etv3	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00135288	Pattern Name Homer Significance motif2.motif 0.00097905
Elf4	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00452657	Pattern Name Homer Significance motif2.motif 0.00693391
Erg	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00105885 metacluster_1/pattern_17 0.032836199999999996	Pattern Name Homer Significance motif2.motif 0.0009150810000000001
Nfya	Pattern Name Modisco Significance metacluster_1/pattern_4 7.88984e-06	Pattern Name Homer Significance motif8.motif 7.07049e-05
Foxi1	Pattern Name Modisco Significance metacluster_1/pattern_4 8.73568e-06	Pattern Name Homer Significance motif8.motif 0.00586851
Ets1	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00108625 metacluster_1/pattern_17 0.00610875	Pattern Name Homer Significance motif2.motif 0.0009150810000000001
Klf6	Pattern Name Modisco Significance metacluster_1/pattern_2 0.000308936	Pattern Name Homer Significance motif3.motif 0.000394297
Sp4	Pattern Name Modisco Significance metacluster_1/pattern_2 0.00184572 metacluster_1/pattern_10 0.0459359 metacluster_1/pattern_13 0.00348793	Pattern Name Homer Significance motif3.motif 0.025400700000000002
Klf1	Pattern Name Modisco Significance metacluster_1/pattern_2 0.027011200000000003 metacluster_1/pattern_13 0.000676702	Pattern Name Homer Significance motif3.motif 0.042527499999999996
Klf4	Pattern Name Modisco Significance metacluster_1/pattern_2 0.00817404 metacluster_1/pattern_13 0.00127611	Pattern Name Homer Significance motif3.motif 0.0564455
Nfyb	Pattern Name Modisco Significance metacluster_1/pattern_4 1.5315899999999998e-10	Pattern Name Homer Significance motif8.motif 2.38931e-06
Irf9	Pattern Name Modisco Significance metacluster_1/pattern_3 0.00255515	Pattern Name Homer Significance motif7.motif 0.00032167299999999997
Nfyc	Pattern Name Modisco Significance metacluster_1/pattern_4 5.668680000000001e-06	Pattern Name Homer Significance motif8.motif 0.00011200700000000001
E2f4	Pattern Name Modisco Significance metacluster_1/pattern_2 0.000485782	Pattern Name Homer Significance motif3.motif 0.00118005
Ehf	Pattern Name Modisco Significance metacluster_1/pattern_0 0.0123465 metacluster_1/pattern_17 0.051529700000000005	Pattern Name Homer Significance motif2.motif 0.00807292
Klf8	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0006566539999999999 metacluster_1/pattern_13 0.000676702	Pattern Name Homer Significance motif3.motif 0.0008887189999999999
Ctcfl	Pattern Name Modisco Significance metacluster_1/pattern_1 1.20507e-07 metacluster_1/pattern_18 0.0240048 metacluster_1/pattern_21 0.024807	Pattern Name Homer Significance motif1.motif 0.0008223330000000001
Elf3	Pattern Name Modisco Significance metacluster_1/pattern_0 0.0230334 metacluster_1/pattern_17 0.032836199999999996	Pattern Name Homer Significance motif2.motif 0.0384392
Zfp42	Pattern Name Modisco Significance metacluster_1/pattern_10 0.0115882	Pattern Name Homer Significance motif16.motif 0.00381309
XP_911724.4	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00121052	Pattern Name Homer Significance motif2.motif 0.00097905
E2f1	Pattern Name Modisco Significance metacluster_1/pattern_2 0.014016999999999998	Pattern Name Homer Significance motif3.motif 0.050958699999999996
Zfp143	Pattern Name Modisco Significance metacluster_1/pattern_11 8.657790000000001e-21	Pattern Name Homer Significance motif6.motif 8.017560000000002e-06
Sp1	Pattern Name Modisco Significance metacluster_1/pattern_2 0.000523704 metacluster_1/pattern_10 0.000286318 metacluster_1/pattern_12 0.027908099999999995 metacluster_1/pattern_18 0.000967058 metacluster_1/pattern_21 0.00143866	Pattern Name Homer Significance motif3.motif 0.010109100000000001
Pbx3	Pattern Name Modisco Significance metacluster_1/pattern_4 0.000102535	Pattern Name Homer Significance motif8.motif 0.00253583
Elf5	Pattern Name Modisco Significance metacluster_1/pattern_0 0.029262 metacluster_1/pattern_17 0.0286869	Pattern Name Homer Significance motif2.motif 0.0398245
Etv2	Pattern Name Modisco Significance metacluster_1/pattern_0 5.78668e-05 metacluster_1/pattern_17 0.00610875	Pattern Name Homer Significance motif2.motif 1.6117199999999999e-06
Etv6	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00105885 metacluster_1/pattern_17 0.032456599999999995	Pattern Name Homer Significance motif2.motif 0.00139163
Sp2	Pattern Name Modisco Significance metacluster_1/pattern_2 4.1097199999999995e-06 metacluster_1/pattern_10 4.73659e-05 metacluster_1/pattern_12 0.00453739 metacluster_1/pattern_18 2.34227e-05 metacluster_1/pattern_21 0.000143322	Pattern Name Homer Significance motif3.motif 5.83865e-06
Stat1	Pattern Name Modisco Significance metacluster_1/pattern_3 1.7377e-05	Pattern Name Homer Significance motif7.motif 0.0317024
Prdm1	Pattern Name Modisco Significance metacluster_1/pattern_3 0.000143669	Pattern Name Homer Significance motif7.motif 0.0493396
Zbtb17	Pattern Name Modisco Significance metacluster_1/pattern_2 0.00817404 metacluster_1/pattern_10 0.00933938 metacluster_1/pattern_21 0.027312599999999996	Pattern Name Homer Significance motif3.motif 0.029848400000000004
Nrf1	Pattern Name Modisco Significance metacluster_1/pattern_5 7.5504199999999994e-06	Pattern Name Homer Significance motif12.motif 0.00117925
Fli1	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00105885 metacluster_1/pattern_17 0.032836199999999996	Pattern Name Homer Significance motif2.motif 0.0009150810000000001

Unique TF-MoDISco TFs: #93

TF Name	Modisco	Homer
Nfe2l2	Pattern Name Modisco Significance metacluster_1/pattern_7 0.00406688	Absent
Rfx1	Pattern Name Modisco Significance metacluster_1/pattern_10 0.0115882 metacluster_1/pattern_12 0.0490994 metacluster_1/pattern_14 9.33198e-08 metacluster_1/pattern_21 0.00432299	Absent
Crem	Pattern Name Modisco Significance metacluster_1/pattern_8 0.00534152	Absent
Jun	Pattern Name Modisco Significance metacluster_1/pattern_7 0.037275800000000005 metacluster_1/pattern_8 0.024410499999999998	Absent
Atf3	Pattern Name Modisco Significance metacluster_1/pattern_7 4.02752e-05 metacluster_1/pattern_8 0.00442405	Absent
Fosl1	Pattern Name Modisco Significance metacluster_1/pattern_7 0.0458101 metacluster_1/pattern_8 0.0327968	Absent
Fosb	Pattern Name Modisco Significance metacluster_1/pattern_7 2.0495300000000003e-05	Absent
Irf8	Pattern Name Modisco Significance metacluster_1/pattern_0 0.024263099999999996 metacluster_1/pattern_3 2.6811400000000003e-06	Absent
Nfkb2	Pattern Name Modisco Significance metacluster_1/pattern_15 1.24371e-05	Absent
Sp5	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0157753	Absent
Clock	Pattern Name Modisco Significance metacluster_1/pattern_12 0.0200681	Absent
Rfx4	Pattern Name Modisco Significance metacluster_1/pattern_14 4.05029e-05	Absent
Runx3	Pattern Name Modisco Significance metacluster_1/pattern_6 0.00159792	Absent
Max	Pattern Name Modisco Significance metacluster_1/pattern_12 0.0200681	Absent
T	Pattern Name Modisco Significance metacluster_1/pattern_16 0.0337471	Absent
Rfx3	Pattern Name Modisco Significance metacluster_1/pattern_14 0.0136346	Absent
Tef	Pattern Name Modisco Significance metacluster_1/pattern_8 0.040711199999999996	Absent
Zbtb33	Pattern Name Modisco Significance metacluster_1/pattern_18 2.34227e-05	Absent
Fos	Pattern Name Modisco Significance metacluster_1/pattern_7 1.1455999999999998e-05	Absent
Rel	Pattern Name Modisco Significance metacluster_1/pattern_15 0.0106152	Absent
Bach1	Pattern Name Modisco Significance metacluster_1/pattern_7 0.00381281	Absent
Zfp740	Pattern Name Modisco Significance metacluster_1/pattern_2 0.048410800000000004	Absent
Nfe2	Pattern Name Modisco Significance metacluster_1/pattern_7 0.00381281	Absent
Creb3l2	Pattern Name Modisco Significance metacluster_1/pattern_12 0.0284563	Absent
Srebf2	Pattern Name Modisco Significance metacluster_1/pattern_12 0.00814911	Absent
Bhlhe41	Pattern Name Modisco Significance metacluster_1/pattern_12 0.0334866	Absent
Eomes	Pattern Name Modisco Significance metacluster_1/pattern_16 0.000734803	Absent
Mef2a	Pattern Name Modisco Significance metacluster_1/pattern_20 0.00022655	Absent
Mitf	Pattern Name Modisco Significance metacluster_1/pattern_12 0.000552952	Absent
Nfkb1	Pattern Name Modisco Significance metacluster_1/pattern_15 7.13603e-05	Absent
Atf1	Pattern Name Modisco Significance metacluster_1/pattern_8 0.0355037 metacluster_1/pattern_12 0.0356423	Absent
Tcfl5	Pattern Name Modisco Significance metacluster_1/pattern_12 0.015349000000000002	Absent
Mef2c	Pattern Name Modisco Significance metacluster_1/pattern_20 6.7792e-07	Absent
Mef2d	Pattern Name Modisco Significance metacluster_1/pattern_20 1.74266e-06	Absent
Xbp1	Pattern Name Modisco Significance metacluster_1/pattern_12 0.0497457	Absent
Tbx21	Pattern Name Modisco Significance metacluster_1/pattern_16 0.00104642	Absent
Tfeb	Pattern Name Modisco Significance metacluster_1/pattern_12 0.000477703	Absent
Irf4	Pattern Name Modisco Significance metacluster_1/pattern_0 0.026176299999999996 metacluster_1/pattern_3 0.0145683	Absent
Npas2	Pattern Name Modisco Significance metacluster_1/pattern_12 0.00342505	Absent
Tbx3	Pattern Name Modisco Significance metacluster_1/pattern_16 0.0210716	Absent
Myc	Pattern Name Modisco Significance metacluster_1/pattern_12 0.0284563	Absent
Rfx2	Pattern Name Modisco Significance metacluster_1/pattern_14 9.33198e-08	Absent
Jund	Pattern Name Modisco Significance metacluster_1/pattern_7 0.00381281	Absent
Maz	Pattern Name Modisco Significance metacluster_1/pattern_10 0.022177799999999998	Absent
Tfec	Pattern Name Modisco Significance metacluster_1/pattern_12 0.00108029	Absent
Tfe3	Pattern Name Modisco Significance metacluster_1/pattern_12 0.000936961	Absent
Runx2	Pattern Name Modisco Significance metacluster_1/pattern_6 0.00782392	Absent
Pou2f2	Pattern Name Modisco Significance metacluster_1/pattern_19 0.000164841	Absent
Hlf	Pattern Name Modisco Significance metacluster_1/pattern_12 0.0362566	Absent
Mycn	Pattern Name Modisco Significance metacluster_1/pattern_12 0.013093200000000001	Absent
Fosl2	Pattern Name Modisco Significance metacluster_1/pattern_7 4.02752e-05 metacluster_1/pattern_8 0.00793436	Absent
Nfil3	Pattern Name Modisco Significance metacluster_1/pattern_8 0.0223257	Absent
Mlx	Pattern Name Modisco Significance metacluster_1/pattern_12 0.00805805	Absent
Tbx1	Pattern Name Modisco Significance metacluster_1/pattern_16 0.0009613310000000001	Absent
Tbx4	Pattern Name Modisco Significance metacluster_1/pattern_16 0.0007254960000000001	Absent
Stat3	Pattern Name Modisco Significance metacluster_1/pattern_0 0.0416451	Absent
Creb1	Pattern Name Modisco Significance metacluster_1/pattern_8 0.00192861 metacluster_1/pattern_12 0.0362566	Absent
Gfi1b	Pattern Name Modisco Significance metacluster_1/pattern_6 0.0561471	Absent
Jdp2	Pattern Name Modisco Significance metacluster_1/pattern_7 2.34583e-05 metacluster_1/pattern_8 0.000757764 metacluster_1/pattern_12 0.0362566	Absent
Usf1	Pattern Name Modisco Significance metacluster_1/pattern_12 0.0245712	Absent
Runx1	Pattern Name Modisco Significance metacluster_1/pattern_6 0.00043428900000000003	Absent
Bhlhe40	Pattern Name Modisco Significance metacluster_1/pattern_12 0.020655	Absent
Tbx5	Pattern Name Modisco Significance metacluster_1/pattern_16 0.0161958	Absent
Junb	Pattern Name Modisco Significance metacluster_1/pattern_7 0.0336767	Absent
Atf7	Pattern Name Modisco Significance metacluster_1/pattern_8 0.000259131 metacluster_1/pattern_12 0.018153299999999997	Absent
Rfx6	Pattern Name Modisco Significance metacluster_1/pattern_14 0.0161846	Absent
Wt1	Pattern Name Modisco Significance metacluster_1/pattern_10 0.0181055	Absent
Batf	Pattern Name Modisco Significance metacluster_1/pattern_7 0.00406688	Absent
Mxi1	Pattern Name Modisco Significance metacluster_1/pattern_10 0.0459359 metacluster_1/pattern_12 0.00165067 metacluster_1/pattern_21 0.024453700000000002	Absent
Rela	Pattern Name Modisco Significance metacluster_1/pattern_15 0.0006744230000000001	Absent
Mafk	Pattern Name Modisco Significance metacluster_1/pattern_7 0.0532052	Absent
Batf3	Pattern Name Modisco Significance metacluster_1/pattern_3 0.00700737	Absent
Relb	Pattern Name Modisco Significance metacluster_1/pattern_15 0.000965913	Absent
Zfp281	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0289793	Absent
Rfx7	Pattern Name Modisco Significance metacluster_1/pattern_14 0.0061936000000000005	Absent
Spic	Pattern Name Modisco Significance metacluster_1/pattern_0 0.055913199999999996	Absent
Bach2	Pattern Name Modisco Significance metacluster_1/pattern_7 0.00225378	Absent
Nr1h4	Pattern Name Modisco Significance metacluster_1/pattern_12 0.054670800000000006	Absent
Tbx20	Pattern Name Modisco Significance metacluster_1/pattern_16 9.38044e-05	Absent
Atf2	Pattern Name Modisco Significance metacluster_1/pattern_8 0.000757764 metacluster_1/pattern_12 0.0266683	Absent
Zscan10	Pattern Name Modisco Significance metacluster_1/pattern_0 0.055913199999999996	Absent
Usf2	Pattern Name Modisco Significance metacluster_1/pattern_8 0.00014903600000000001 metacluster_1/pattern_10 0.0524073 metacluster_1/pattern_12 0.00456612 metacluster_1/pattern_18 0.051426599999999996 metacluster_1/pattern_21 0.00654787	Absent
Arntl	Pattern Name Modisco Significance metacluster_1/pattern_12 0.005443600000000001	Absent
Mafa	Pattern Name Modisco Significance metacluster_1/pattern_7 0.0526577	Absent
Tbr1	Pattern Name Modisco Significance metacluster_1/pattern_16 0.00025189200000000003	Absent
Egr3	Pattern Name Modisco Significance metacluster_1/pattern_2 0.05372819999999999	Absent
Ets2	Pattern Name Modisco Significance metacluster_1/pattern_17 0.0455224	Absent
Srebf1	Pattern Name Modisco Significance metacluster_1/pattern_12 0.054670800000000006	Absent
Creb5	Pattern Name Modisco Significance metacluster_1/pattern_8 0.0010744	Absent
Cbfb	Pattern Name Modisco Significance metacluster_1/pattern_6 0.00385962	Absent
Arnt	Pattern Name Modisco Significance metacluster_1/pattern_12 0.053257000000000006	Absent
Irf3	Pattern Name Modisco Significance metacluster_1/pattern_3 0.000425845	Absent
Stat6	Pattern Name Modisco Significance metacluster_1/pattern_0 0.0504866	Absent

Unique Homer TFs: #2

TF Name	Modisco	Homer
Zbtb1	Absent	Pattern Name Homer Significance motif3.motif 0.0578974
E2f7	Absent	Pattern Name Homer Significance motif3.motif 0.0592245