# Parameters
data_name = "B1_B;A;CL"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
tomtom_report_root = "http://mitra.stanford.edu/kundaje/msharmin/report/tomtom_outs/cells"
task_dir = "task_10-naivegw"
perf_file = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/fineFactorized/task_10-naivegw/NaiveauPRC.txt"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
reportfile = "/mnt/lab_data/kundaje/msharmin/annotations/filtering samples_MS2.xlsx"
sheetname = "filter23"

from matlas.reports import display_metadata

load data from labcluster

Using TensorFlow backend.
2019-08-30 18:41:46,331 [WARNING] git-lfs not installed

display_metadata(data_name, perf_file, reportfile, sheetname)

Sample Information

MetaData Name	Description
Cell type	B1 B cells
Cell Group	B cells
Experiment Name	ATAC
Experiment Group	Casellas Lab

Pipeline Output

replicate	Naïve overlap peaks	IDR peaks	TSS enrichment (< 8 is very poor <10 is low)	Final number of unique mapping, dup-filtered, chrM filtered reads	Number of reads in called peak regions	Fraction of reads in called peak regions	Number of reads in promoter regions	Fraction of reads in promoter regions	Number of reads in enhancer regions	Fraction of reads in enhancer regions
rep1	107238	84076	13.8031	46510157	7713200	0.1659	5255844	0.1131	14728840	0.3168

Modelling Metadata

Metric	Value
auPRC	0.5533
Calibrated Recall at 50% FDR	0.225
Number of Positive Examples in Test Data	87013
Number of Negative Examples in Test Data	7983838
Imbalance Ratio in Test Data	0.0108
Test Chromosomes	chr2, chr3, chr19

from matlas.reports import display_paiwise_pattern_comparison
from matlas.reports import display_denovo_patterns

display_denovo_patterns(data_name, modisco_root=modisco_root)

TF-MoDISco is using the TensorFlow backend.

The following two links show list of Denovo Patterns and corresponding Motifs discovered by TF-MoDISco

Click here for Denovo Patterns by TF-MoDISco: #21

Pattern Name	TF Name(s)	Modisco
metacluster_1/pattern_0 # seqlets: 4980 SequenceContrib ScoresHyp_Contrib Scores	Ctcf, Ctcfl
metacluster_1/pattern_1 # seqlets: 4755 SequenceContrib ScoresHyp_Contrib Scores	Spib, Spi1, Irf4, Irf8, Spic, Ets1, Etv6, Etv2, Erg, Gabpa, Elf1, Elk1, Etv3, Fli1, Elf4, XP_911724.4, Ehf, Etv4, Elf2, Elf3, Elk4, Elk3, Etv1, Etv5, Elf5, Irf3, Prdm1, Irf2, Irf1, Fev, Spdef
metacluster_1/pattern_2 # seqlets: 4402 SequenceContrib ScoresHyp_Contrib Scores	Sp2, Sp4, Sp3, Klf3, Sp1, E2f4, Klf7, Klf4, Klf6, Klf8, Klf12, Klf1, Egr1, Zbtb17, Egr2, E2f1, Klf5, Sp5, Zfp281, Zfx, Zfp740, Egr3, Zbtb1, Sall4
metacluster_1/pattern_3 # seqlets: 1483 SequenceContrib ScoresHyp_Contrib Scores	Nrf1
metacluster_1/pattern_4 # seqlets: 1322 SequenceContrib ScoresHyp_Contrib Scores	Nfyb, Nfyc, Nfya, Foxi1, Pbx3
metacluster_1/pattern_5 # seqlets: 934 SequenceContrib ScoresHyp_Contrib Scores	Taf1, Yy1, Rfx1, Zfp42, Wt1, Mxi1, Maz, Usf2
metacluster_1/pattern_6 # seqlets: 899 SequenceContrib ScoresHyp_Contrib Scores	Creb1, Atf2, Atf7, Atf1, Jdp2, Crem, Atf3, Creb5, Fosl2, Jun, Nfil3
metacluster_1/pattern_7 # seqlets: 820 SequenceContrib ScoresHyp_Contrib Scores	Irf7, Stat2, Stat1, Irf9, Zscan10
metacluster_1/pattern_8 # seqlets: 734 SequenceContrib ScoresHyp_Contrib Scores	Thap11, Zfp143, Tbx2
metacluster_1/pattern_9 # seqlets: 593 SequenceContrib ScoresHyp_Contrib Scores	Pou2f2, Pou2f1, Pou5f1
metacluster_1/pattern_10 # seqlets: 575 SequenceContrib ScoresHyp_Contrib Scores	Rfx3, Rfx2, Rfx4, Rfx7, Rfx6, Sox2
metacluster_1/pattern_11 # seqlets: 556 SequenceContrib ScoresHyp_Contrib Scores	Nfkb2, Nfkb1, Rela, Relb, Rel
metacluster_1/pattern_12 # seqlets: 478 SequenceContrib ScoresHyp_Contrib Scores	Usf1, Tfeb, Tfe3, Arntl, Tfec, Mitf, Clock, Srebf1, Bhlhe40, Arnt, Npas2, Mlx, Creb3l2, Srebf2, Mycn, Max, Tcfl5, Myc, Bhlhe41, Xbp1, Hlf, Hes1, Dbp, Mlxip
metacluster_1/pattern_13 # seqlets: 266 SequenceContrib ScoresHyp_Contrib Scores	Jund, Fosl1, Fos, Junb, Fosb, Batf, Bach2, Nfe2l2, Bach1, Nfe2, Mafa
metacluster_1/pattern_14 # seqlets: 244 SequenceContrib ScoresHyp_Contrib Scores
metacluster_1/pattern_15 # seqlets: 231 SequenceContrib ScoresHyp_Contrib Scores	Zbtb33
metacluster_1/pattern_16 # seqlets: 189 SequenceContrib ScoresHyp_Contrib Scores	Runx1, Runx2, Runx3, Cbfb
metacluster_1/pattern_17 # seqlets: 68 SequenceContrib ScoresHyp_Contrib Scores
metacluster_1/pattern_18 # seqlets: 60 SequenceContrib ScoresHyp_Contrib Scores	Lyl1, Ptf1a, Myog, Olig2, Bhlha15, Tcf3, Ascl2, Neurod2, Neurod1, Tal1, Foxo1
metacluster_1/pattern_19 # seqlets: 37 SequenceContrib ScoresHyp_Contrib Scores	Myf6, Ascl1, Tcf4, Snai2, Nhlh2
metacluster_1/pattern_20 # seqlets: 32 SequenceContrib ScoresHyp_Contrib Scores

Click here for Motifs by TF-MoDISco: #160

TF Name	Pattern(s)
Ctcf	Pattern Name Modisco Significance metacluster_1/pattern_0 5.4832099999999994e-15
Ctcfl	Pattern Name Modisco Significance metacluster_1/pattern_0 7.45007e-08 metacluster_1/pattern_14 0.0186075
Spib	Pattern Name Modisco Significance metacluster_1/pattern_1 5.51813e-06 metacluster_1/pattern_7 1.2667100000000001e-05
Spi1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00020066900000000003 metacluster_1/pattern_7 0.0512096 metacluster_1/pattern_17 0.0504823
Irf4	Pattern Name Modisco Significance metacluster_1/pattern_1 5.41649e-05 metacluster_1/pattern_7 0.0102596
Irf8	Pattern Name Modisco Significance metacluster_1/pattern_1 6.98555e-05 metacluster_1/pattern_7 7.04997e-11
Spic	Pattern Name Modisco Significance metacluster_1/pattern_1 0.000160899
Ets1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00106521 metacluster_1/pattern_17 0.0504823 metacluster_1/pattern_18 0.047368
Etv6	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00524198 metacluster_1/pattern_18 0.0520798
Etv2	Pattern Name Modisco Significance metacluster_1/pattern_1 0.000801286 metacluster_1/pattern_17 0.0126262 metacluster_1/pattern_18 0.04648819999999999
Erg	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0011631999999999999 metacluster_1/pattern_17 0.0504823 metacluster_1/pattern_18 0.0558731
Gabpa	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0187137 metacluster_1/pattern_17 0.0504823
Elf1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00112233 metacluster_1/pattern_17 0.0392213
Elk1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00235958 metacluster_1/pattern_17 0.05235990000000001
Etv3	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00115212 metacluster_1/pattern_17 0.0504823 metacluster_1/pattern_18 0.04648819999999999
Fli1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00603009 metacluster_1/pattern_17 0.0504823 metacluster_1/pattern_18 0.04648819999999999
Elf4	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00118243
XP_911724.4	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00118243 metacluster_1/pattern_17 0.052295100000000004 metacluster_1/pattern_18 0.04648819999999999
Ehf	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00434107
Etv4	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00292417 metacluster_1/pattern_17 0.0504823
Elf2	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0509655
Elf3	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00929221
Elk4	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00286579 metacluster_1/pattern_17 0.05235990000000001 metacluster_1/pattern_18 0.0558731
Elk3	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00226433 metacluster_1/pattern_17 0.05235990000000001
Etv1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00335884 metacluster_1/pattern_17 0.05235990000000001
Etv5	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00292417 metacluster_1/pattern_17 0.05235990000000001
Elf5	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0132782
Irf3	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00450135 metacluster_1/pattern_7 0.00189095
Prdm1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00464589 metacluster_1/pattern_7 0.00168145
Irf2	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00541399 metacluster_1/pattern_7 0.00923547
Irf1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00972904 metacluster_1/pattern_7 4.10664e-06
Fev	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0182743
Spdef	Pattern Name Modisco Significance metacluster_1/pattern_1 0.023571599999999998
Sp2	Pattern Name Modisco Significance metacluster_1/pattern_2 4.11158e-06 metacluster_1/pattern_5 1.1326800000000001e-05 metacluster_1/pattern_14 1.51349e-05 metacluster_1/pattern_15 0.00154522
Sp4	Pattern Name Modisco Significance metacluster_1/pattern_2 0.00122033
Sp3	Pattern Name Modisco Significance metacluster_1/pattern_2 5.70983e-06 metacluster_1/pattern_5 0.00027100599999999996 metacluster_1/pattern_14 0.000317933 metacluster_1/pattern_15 0.000706535
Klf3	Pattern Name Modisco Significance metacluster_1/pattern_2 1.03153e-05 metacluster_1/pattern_5 0.0237882 metacluster_1/pattern_14 0.00341054 metacluster_1/pattern_15 0.0275281
Sp1	Pattern Name Modisco Significance metacluster_1/pattern_2 0.00037882 metacluster_1/pattern_5 0.00020677 metacluster_1/pattern_14 0.000160812
E2f4	Pattern Name Modisco Significance metacluster_1/pattern_2 0.00043866900000000004
Klf7	Pattern Name Modisco Significance metacluster_1/pattern_2 0.000520364
Klf4	Pattern Name Modisco Significance metacluster_1/pattern_2 0.00870644 metacluster_1/pattern_17 0.0504823
Klf6	Pattern Name Modisco Significance metacluster_1/pattern_2 0.000596837 metacluster_1/pattern_14 0.00565376
Klf8	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0007320610000000001
Klf12	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0121385
Klf1	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0295814 metacluster_1/pattern_17 0.0504823
Egr1	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0314696 metacluster_1/pattern_5 0.0577682
Zbtb17	Pattern Name Modisco Significance metacluster_1/pattern_2 0.00583229 metacluster_1/pattern_5 0.00944341 metacluster_1/pattern_14 0.00657499
Egr2	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0295814
E2f1	Pattern Name Modisco Significance metacluster_1/pattern_2 0.010421399999999999
Klf5	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0121385
Sp5	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0232044
Zfp281	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0253184
Zfx	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0253184 metacluster_1/pattern_5 0.00162247 metacluster_1/pattern_6 0.00689624 metacluster_1/pattern_14 0.0510112 metacluster_1/pattern_15 0.000706535
Zfp740	Pattern Name Modisco Significance metacluster_1/pattern_2 0.039363300000000004
Egr3	Pattern Name Modisco Significance metacluster_1/pattern_2 0.040417
Zbtb1	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0463942
Sall4	Pattern Name Modisco Significance metacluster_1/pattern_2 0.059148
Nrf1	Pattern Name Modisco Significance metacluster_1/pattern_3 3.2718299999999997e-06
Nfyb	Pattern Name Modisco Significance metacluster_1/pattern_4 1.7706999999999998e-14
Nfyc	Pattern Name Modisco Significance metacluster_1/pattern_4 4.34121e-12
Nfya	Pattern Name Modisco Significance metacluster_1/pattern_4 1.2319499999999998e-10
Foxi1	Pattern Name Modisco Significance metacluster_1/pattern_4 1.4890399999999999e-06
Pbx3	Pattern Name Modisco Significance metacluster_1/pattern_4 3.1508299999999995e-06
Taf1	Pattern Name Modisco Significance metacluster_1/pattern_5 4.61472e-06
Yy1	Pattern Name Modisco Significance metacluster_1/pattern_5 8.50993e-06
Rfx1	Pattern Name Modisco Significance metacluster_1/pattern_5 0.00378756 metacluster_1/pattern_10 6.43853e-11 metacluster_1/pattern_14 0.013937200000000002
Zfp42	Pattern Name Modisco Significance metacluster_1/pattern_5 0.00944341
Wt1	Pattern Name Modisco Significance metacluster_1/pattern_5 0.0331966 metacluster_1/pattern_14 0.034043199999999996
Mxi1	Pattern Name Modisco Significance metacluster_1/pattern_5 0.034650099999999996
Maz	Pattern Name Modisco Significance metacluster_1/pattern_5 0.035930800000000006
Usf2	Pattern Name Modisco Significance metacluster_1/pattern_5 0.0495264 metacluster_1/pattern_6 0.000106783 metacluster_1/pattern_12 0.00272237 metacluster_1/pattern_14 0.032577499999999995 metacluster_1/pattern_15 0.028185200000000004
Creb1	Pattern Name Modisco Significance metacluster_1/pattern_6 0.00246526 metacluster_1/pattern_12 0.032026599999999995
Atf2	Pattern Name Modisco Significance metacluster_1/pattern_6 0.00596179 metacluster_1/pattern_12 0.0566706
Atf7	Pattern Name Modisco Significance metacluster_1/pattern_6 0.00178764 metacluster_1/pattern_12 0.0378416
Atf1	Pattern Name Modisco Significance metacluster_1/pattern_6 0.0154496 metacluster_1/pattern_12 0.0233267
Jdp2	Pattern Name Modisco Significance metacluster_1/pattern_6 0.00596179 metacluster_1/pattern_12 0.0514347 metacluster_1/pattern_13 0.00114972
Crem	Pattern Name Modisco Significance metacluster_1/pattern_6 0.0172894
Atf3	Pattern Name Modisco Significance metacluster_1/pattern_6 0.0157136 metacluster_1/pattern_13 8.33935e-06
Creb5	Pattern Name Modisco Significance metacluster_1/pattern_6 0.00789241
Fosl2	Pattern Name Modisco Significance metacluster_1/pattern_6 0.0178065 metacluster_1/pattern_13 0.000851045
Jun	Pattern Name Modisco Significance metacluster_1/pattern_6 0.040832099999999996 metacluster_1/pattern_13 0.051718499999999994
Nfil3	Pattern Name Modisco Significance metacluster_1/pattern_6 0.05983480000000001
Irf7	Pattern Name Modisco Significance metacluster_1/pattern_7 0.000905326
Stat2	Pattern Name Modisco Significance metacluster_1/pattern_7 0.00126374
Stat1	Pattern Name Modisco Significance metacluster_1/pattern_7 0.00189095
Irf9	Pattern Name Modisco Significance metacluster_1/pattern_7 0.00476847
Zscan10	Pattern Name Modisco Significance metacluster_1/pattern_7 0.0102596
Thap11	Pattern Name Modisco Significance metacluster_1/pattern_8 2.1601100000000003e-21
Zfp143	Pattern Name Modisco Significance metacluster_1/pattern_8 3.26003e-21
Tbx2	Pattern Name Modisco Significance metacluster_1/pattern_8 3.4881e-14
Pou2f2	Pattern Name Modisco Significance metacluster_1/pattern_9 0.00342403
Pou2f1	Pattern Name Modisco Significance metacluster_1/pattern_9 0.0079932
Pou5f1	Pattern Name Modisco Significance metacluster_1/pattern_9 0.058925
Rfx3	Pattern Name Modisco Significance metacluster_1/pattern_10 0.000252437
Rfx2	Pattern Name Modisco Significance metacluster_1/pattern_10 0.00571393
Rfx4	Pattern Name Modisco Significance metacluster_1/pattern_10 2.4632800000000002e-05
Rfx7	Pattern Name Modisco Significance metacluster_1/pattern_10 0.000233747
Rfx6	Pattern Name Modisco Significance metacluster_1/pattern_10 0.000347872
Sox2	Pattern Name Modisco Significance metacluster_1/pattern_10 0.0552174
Nfkb2	Pattern Name Modisco Significance metacluster_1/pattern_11 8.223609999999999e-07
Nfkb1	Pattern Name Modisco Significance metacluster_1/pattern_11 0.000122402
Rela	Pattern Name Modisco Significance metacluster_1/pattern_11 0.0006354269999999999
Relb	Pattern Name Modisco Significance metacluster_1/pattern_11 0.000536032
Rel	Pattern Name Modisco Significance metacluster_1/pattern_11 0.0323655
Usf1	Pattern Name Modisco Significance metacluster_1/pattern_12 0.00626004
Tfeb	Pattern Name Modisco Significance metacluster_1/pattern_12 0.000826127
Tfe3	Pattern Name Modisco Significance metacluster_1/pattern_12 0.0021774999999999997
Arntl	Pattern Name Modisco Significance metacluster_1/pattern_12 0.00273108
Tfec	Pattern Name Modisco Significance metacluster_1/pattern_12 0.00181908
Mitf	Pattern Name Modisco Significance metacluster_1/pattern_12 0.00131864
Clock	Pattern Name Modisco Significance metacluster_1/pattern_12 0.0578279
Srebf1	Pattern Name Modisco Significance metacluster_1/pattern_12 0.0461214
Bhlhe40	Pattern Name Modisco Significance metacluster_1/pattern_12 0.0186774
Arnt	Pattern Name Modisco Significance metacluster_1/pattern_12 0.051823400000000006
Npas2	Pattern Name Modisco Significance metacluster_1/pattern_12 0.00162443
Mlx	Pattern Name Modisco Significance metacluster_1/pattern_12 0.018999099999999998
Creb3l2	Pattern Name Modisco Significance metacluster_1/pattern_12 0.0236157
Srebf2	Pattern Name Modisco Significance metacluster_1/pattern_12 0.00650212
Mycn	Pattern Name Modisco Significance metacluster_1/pattern_12 0.0496236
Max	Pattern Name Modisco Significance metacluster_1/pattern_12 0.058010400000000004
Tcfl5	Pattern Name Modisco Significance metacluster_1/pattern_12 0.0108772
Myc	Pattern Name Modisco Significance metacluster_1/pattern_12 0.0188117
Bhlhe41	Pattern Name Modisco Significance metacluster_1/pattern_12 0.0266291
Xbp1	Pattern Name Modisco Significance metacluster_1/pattern_12 0.030501999999999998
Hlf	Pattern Name Modisco Significance metacluster_1/pattern_12 0.0378416
Hes1	Pattern Name Modisco Significance metacluster_1/pattern_12 0.0514347
Dbp	Pattern Name Modisco Significance metacluster_1/pattern_12 0.054104700000000006
Mlxip	Pattern Name Modisco Significance metacluster_1/pattern_12 0.057183300000000006
Jund	Pattern Name Modisco Significance metacluster_1/pattern_13 0.00883295
Fosl1	Pattern Name Modisco Significance metacluster_1/pattern_13 1.3721799999999998e-06
Fos	Pattern Name Modisco Significance metacluster_1/pattern_13 2.50357e-06
Junb	Pattern Name Modisco Significance metacluster_1/pattern_13 0.038427499999999996
Fosb	Pattern Name Modisco Significance metacluster_1/pattern_13 3.76767e-06
Batf	Pattern Name Modisco Significance metacluster_1/pattern_13 0.0358869
Bach2	Pattern Name Modisco Significance metacluster_1/pattern_13 0.00480557
Nfe2l2	Pattern Name Modisco Significance metacluster_1/pattern_13 0.0106471
Bach1	Pattern Name Modisco Significance metacluster_1/pattern_13 0.00883295
Nfe2	Pattern Name Modisco Significance metacluster_1/pattern_13 0.00915931
Mafa	Pattern Name Modisco Significance metacluster_1/pattern_13 0.041255400000000005
Zbtb33	Pattern Name Modisco Significance metacluster_1/pattern_15 7.44596e-06
Runx1	Pattern Name Modisco Significance metacluster_1/pattern_16 0.007559000000000001
Runx2	Pattern Name Modisco Significance metacluster_1/pattern_16 0.00341127
Runx3	Pattern Name Modisco Significance metacluster_1/pattern_16 0.00466792 metacluster_1/pattern_17 0.032691200000000004
Cbfb	Pattern Name Modisco Significance metacluster_1/pattern_16 0.00744434
Lyl1	Pattern Name Modisco Significance metacluster_1/pattern_18 4.34358e-06
Ptf1a	Pattern Name Modisco Significance metacluster_1/pattern_18 0.0488144
Myog	Pattern Name Modisco Significance metacluster_1/pattern_18 0.0349068
Olig2	Pattern Name Modisco Significance metacluster_1/pattern_18 0.047368
Bhlha15	Pattern Name Modisco Significance metacluster_1/pattern_18 0.04648819999999999
Tcf3	Pattern Name Modisco Significance metacluster_1/pattern_18 0.04648819999999999 metacluster_1/pattern_19 0.0383071
Ascl2	Pattern Name Modisco Significance metacluster_1/pattern_18 0.04648819999999999 metacluster_1/pattern_19 0.0345565
Neurod2	Pattern Name Modisco Significance metacluster_1/pattern_18 0.04648819999999999
Neurod1	Pattern Name Modisco Significance metacluster_1/pattern_18 0.057993499999999996
Tal1	Pattern Name Modisco Significance metacluster_1/pattern_18 0.047368
Foxo1	Pattern Name Modisco Significance metacluster_1/pattern_18 0.0506707
Myf6	Pattern Name Modisco Significance metacluster_1/pattern_19 0.0345565
Ascl1	Pattern Name Modisco Significance metacluster_1/pattern_19 0.0345565
Tcf4	Pattern Name Modisco Significance metacluster_1/pattern_19 0.0345565
Snai2	Pattern Name Modisco Significance metacluster_1/pattern_19 0.0345565
Nhlh2	Pattern Name Modisco Significance metacluster_1/pattern_19 0.0489541

display_paiwise_pattern_comparison(data_name, modisco_root, homer_root)

Number of CISBP TFs obtained by TF-MoDISco and Homer

Shared TFs between TF-MoDISco and Homer: #74

TF Name	Modisco	Homer
Sp4	Pattern Name Modisco Significance metacluster_1/pattern_2 0.00122033	Pattern Name Homer Significance motif3.motif 0.000216039
Pou5f1	Pattern Name Modisco Significance metacluster_1/pattern_9 0.058925	Pattern Name Homer Significance motif14.motif 0.0254588
Yy1	Pattern Name Modisco Significance metacluster_1/pattern_5 8.50993e-06	Pattern Name Homer Significance motif18.motif 0.000127171
Crem	Pattern Name Modisco Significance metacluster_1/pattern_6 0.0172894	Pattern Name Homer Significance motif10.motif 0.0177541
Prdm1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00464589 metacluster_1/pattern_7 0.00168145	Pattern Name Homer Significance motif2.motif 0.0082864
Fli1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00603009 metacluster_1/pattern_17 0.0504823 metacluster_1/pattern_18 0.04648819999999999	Pattern Name Homer Significance motif2.motif 0.00020674900000000002
Irf3	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00450135 metacluster_1/pattern_7 0.00189095	Pattern Name Homer Significance motif2.motif 0.018034599999999998
Ehf	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00434107	Pattern Name Homer Significance motif2.motif 0.00231124
Atf2	Pattern Name Modisco Significance metacluster_1/pattern_6 0.00596179 metacluster_1/pattern_12 0.0566706	Pattern Name Homer Significance motif10.motif 0.025348
Sp3	Pattern Name Modisco Significance metacluster_1/pattern_2 5.70983e-06 metacluster_1/pattern_5 0.00027100599999999996 metacluster_1/pattern_14 0.000317933 metacluster_1/pattern_15 0.000706535	Pattern Name Homer Significance motif3.motif 0.000510917
Jdp2	Pattern Name Modisco Significance metacluster_1/pattern_6 0.00596179 metacluster_1/pattern_12 0.0514347 metacluster_1/pattern_13 0.00114972	Pattern Name Homer Significance motif10.motif 0.0481226
Elf5	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0132782	Pattern Name Homer Significance motif2.motif 0.031332799999999994
Taf1	Pattern Name Modisco Significance metacluster_1/pattern_5 4.61472e-06	Pattern Name Homer Significance motif18.motif 6.20376e-05
Rela	Pattern Name Modisco Significance metacluster_1/pattern_11 0.0006354269999999999	Pattern Name Homer Significance motif20.motif 0.00235508
Sp1	Pattern Name Modisco Significance metacluster_1/pattern_2 0.00037882 metacluster_1/pattern_5 0.00020677 metacluster_1/pattern_14 0.000160812	Pattern Name Homer Significance motif3.motif 0.050013999999999996
Klf12	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0121385	Pattern Name Homer Significance motif3.motif 0.0052101000000000005
XP_911724.4	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00118243 metacluster_1/pattern_17 0.052295100000000004 metacluster_1/pattern_18 0.04648819999999999	Pattern Name Homer Significance motif2.motif 0.000283906
Ctcf	Pattern Name Modisco Significance metacluster_1/pattern_0 5.4832099999999994e-15	Pattern Name Homer Significance motif1.motif 0.000158028
Etv5	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00292417 metacluster_1/pattern_17 0.05235990000000001	Pattern Name Homer Significance motif2.motif 0.000312559
Nfyc	Pattern Name Modisco Significance metacluster_1/pattern_4 4.34121e-12	Pattern Name Homer Significance motif6.motif 2.50155e-05
Tbx2	Pattern Name Modisco Significance metacluster_1/pattern_8 3.4881e-14	Pattern Name Homer Significance motif4.motif 1.60204e-05
Klf8	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0007320610000000001	Pattern Name Homer Significance motif3.motif 0.00326374
Klf5	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0121385	Pattern Name Homer Significance motif3.motif 0.013472
Nfkb1	Pattern Name Modisco Significance metacluster_1/pattern_11 0.000122402	Pattern Name Homer Significance motif20.motif 0.00151058
Elk1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00235958 metacluster_1/pattern_17 0.05235990000000001	Pattern Name Homer Significance motif2.motif 0.000180407
Elf1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00112233 metacluster_1/pattern_17 0.0392213	Pattern Name Homer Significance motif2.motif 0.000142645
Irf2	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00541399 metacluster_1/pattern_7 0.00923547	Pattern Name Homer Significance motif2.motif 0.0082864
Irf9	Pattern Name Modisco Significance metacluster_1/pattern_7 0.00476847	Pattern Name Homer Significance motif2.motif 0.058876
Etv6	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00524198 metacluster_1/pattern_18 0.0520798	Pattern Name Homer Significance motif2.motif 0.0100782
Creb1	Pattern Name Modisco Significance metacluster_1/pattern_6 0.00246526 metacluster_1/pattern_12 0.032026599999999995	Pattern Name Homer Significance motif10.motif 0.0193862
Atf7	Pattern Name Modisco Significance metacluster_1/pattern_6 0.00178764 metacluster_1/pattern_12 0.0378416	Pattern Name Homer Significance motif10.motif 0.0238458
Spib	Pattern Name Modisco Significance metacluster_1/pattern_1 5.51813e-06 metacluster_1/pattern_7 1.2667100000000001e-05	Pattern Name Homer Significance motif2.motif 0.000133089
Spdef	Pattern Name Modisco Significance metacluster_1/pattern_1 0.023571599999999998	Pattern Name Homer Significance motif2.motif 0.011244
Zfp143	Pattern Name Modisco Significance metacluster_1/pattern_8 3.26003e-21	Pattern Name Homer Significance motif4.motif 1.45943e-08
Irf8	Pattern Name Modisco Significance metacluster_1/pattern_1 6.98555e-05 metacluster_1/pattern_7 7.04997e-11	Pattern Name Homer Significance motif2.motif 0.000282943
Spic	Pattern Name Modisco Significance metacluster_1/pattern_1 0.000160899	Pattern Name Homer Significance motif2.motif 0.000680742
Etv4	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00292417 metacluster_1/pattern_17 0.0504823	Pattern Name Homer Significance motif2.motif 0.00186613
Relb	Pattern Name Modisco Significance metacluster_1/pattern_11 0.000536032	Pattern Name Homer Significance motif20.motif 0.0107708
Elf3	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00929221	Pattern Name Homer Significance motif2.motif 0.00752784
Fev	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0182743	Pattern Name Homer Significance motif2.motif 0.00151388
Spi1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00020066900000000003 metacluster_1/pattern_7 0.0512096 metacluster_1/pattern_17 0.0504823	Pattern Name Homer Significance motif2.motif 0.000585852
Rel	Pattern Name Modisco Significance metacluster_1/pattern_11 0.0323655	Pattern Name Homer Significance motif20.motif 0.008614499999999999
Creb5	Pattern Name Modisco Significance metacluster_1/pattern_6 0.00789241	Pattern Name Homer Significance motif10.motif 0.012911099999999998
Klf7	Pattern Name Modisco Significance metacluster_1/pattern_2 0.000520364	Pattern Name Homer Significance motif3.motif 0.00144299
Etv2	Pattern Name Modisco Significance metacluster_1/pattern_1 0.000801286 metacluster_1/pattern_17 0.0126262 metacluster_1/pattern_18 0.04648819999999999	Pattern Name Homer Significance motif2.motif 0.000283906
Atf1	Pattern Name Modisco Significance metacluster_1/pattern_6 0.0154496 metacluster_1/pattern_12 0.0233267	Pattern Name Homer Significance motif10.motif 0.04384469999999999
Zfp42	Pattern Name Modisco Significance metacluster_1/pattern_5 0.00944341	Pattern Name Homer Significance motif18.motif 0.000557962
Ctcfl	Pattern Name Modisco Significance metacluster_1/pattern_0 7.45007e-08 metacluster_1/pattern_14 0.0186075	Pattern Name Homer Significance motif1.motif 0.00174781
E2f4	Pattern Name Modisco Significance metacluster_1/pattern_2 0.00043866900000000004	Pattern Name Homer Significance motif3.motif 0.00374459
Nfya	Pattern Name Modisco Significance metacluster_1/pattern_4 1.2319499999999998e-10	Pattern Name Homer Significance motif6.motif 7.17444e-06
Nrf1	Pattern Name Modisco Significance metacluster_1/pattern_3 3.2718299999999997e-06	Pattern Name Homer Significance motif9.motif 1.37909e-06
Thap11	Pattern Name Modisco Significance metacluster_1/pattern_8 2.1601100000000003e-21	Pattern Name Homer Significance motif4.motif 1.45943e-08
Ets1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00106521 metacluster_1/pattern_17 0.0504823 metacluster_1/pattern_18 0.047368	Pattern Name Homer Significance motif2.motif 0.000142645
Foxi1	Pattern Name Modisco Significance metacluster_1/pattern_4 1.4890399999999999e-06	Pattern Name Homer Significance motif6.motif 0.00190402
Elf2	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0509655	Pattern Name Homer Significance motif2.motif 0.050143
Elf4	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00118243	Pattern Name Homer Significance motif2.motif 0.000682204
Etv1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00335884 metacluster_1/pattern_17 0.05235990000000001	Pattern Name Homer Significance motif2.motif 0.000283906
Egr1	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0314696 metacluster_1/pattern_5 0.0577682	Pattern Name Homer Significance motif3.motif 0.0224987
Pbx3	Pattern Name Modisco Significance metacluster_1/pattern_4 3.1508299999999995e-06	Pattern Name Homer Significance motif6.motif 0.00161993
Etv3	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00115212 metacluster_1/pattern_17 0.0504823 metacluster_1/pattern_18 0.04648819999999999	Pattern Name Homer Significance motif2.motif 0.000247534
Sp2	Pattern Name Modisco Significance metacluster_1/pattern_2 4.11158e-06 metacluster_1/pattern_5 1.1326800000000001e-05 metacluster_1/pattern_14 1.51349e-05 metacluster_1/pattern_15 0.00154522	Pattern Name Homer Significance motif3.motif 0.000149249
Klf4	Pattern Name Modisco Significance metacluster_1/pattern_2 0.00870644 metacluster_1/pattern_17 0.0504823	Pattern Name Homer Significance motif3.motif 0.050013999999999996
Pou2f2	Pattern Name Modisco Significance metacluster_1/pattern_9 0.00342403	Pattern Name Homer Significance motif14.motif 0.00544922
Elk4	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00286579 metacluster_1/pattern_17 0.05235990000000001 metacluster_1/pattern_18 0.0558731	Pattern Name Homer Significance motif2.motif 0.000180407
Irf4	Pattern Name Modisco Significance metacluster_1/pattern_1 5.41649e-05 metacluster_1/pattern_7 0.0102596	Pattern Name Homer Significance motif2.motif 0.000282943
Nfyb	Pattern Name Modisco Significance metacluster_1/pattern_4 1.7706999999999998e-14	Pattern Name Homer Significance motif6.motif 3.7019199999999996e-07
Klf1	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0295814 metacluster_1/pattern_17 0.0504823	Pattern Name Homer Significance motif3.motif 0.0224987
Nfkb2	Pattern Name Modisco Significance metacluster_1/pattern_11 8.223609999999999e-07	Pattern Name Homer Significance motif20.motif 0.00418041
Gabpa	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0187137 metacluster_1/pattern_17 0.0504823	Pattern Name Homer Significance motif2.motif 0.00168318
Irf1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00972904 metacluster_1/pattern_7 4.10664e-06	Pattern Name Homer Significance motif2.motif 0.0125166
Klf3	Pattern Name Modisco Significance metacluster_1/pattern_2 1.03153e-05 metacluster_1/pattern_5 0.0237882 metacluster_1/pattern_14 0.00341054 metacluster_1/pattern_15 0.0275281	Pattern Name Homer Significance motif3.motif 6.42644e-05
Klf6	Pattern Name Modisco Significance metacluster_1/pattern_2 0.000596837 metacluster_1/pattern_14 0.00565376	Pattern Name Homer Significance motif3.motif 0.00126999
Elk3	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00226433 metacluster_1/pattern_17 0.05235990000000001	Pattern Name Homer Significance motif2.motif 0.000283906
Erg	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0011631999999999999 metacluster_1/pattern_17 0.0504823 metacluster_1/pattern_18 0.0558731	Pattern Name Homer Significance motif2.motif 0.00017513700000000001

Unique TF-MoDISco TFs: #86

TF Name	Modisco	Homer
Mafa	Pattern Name Modisco Significance metacluster_1/pattern_13 0.041255400000000005	Absent
Mxi1	Pattern Name Modisco Significance metacluster_1/pattern_5 0.034650099999999996	Absent
Nfil3	Pattern Name Modisco Significance metacluster_1/pattern_6 0.05983480000000001	Absent
Bhlhe40	Pattern Name Modisco Significance metacluster_1/pattern_12 0.0186774	Absent
Rfx3	Pattern Name Modisco Significance metacluster_1/pattern_10 0.000252437	Absent
Fosb	Pattern Name Modisco Significance metacluster_1/pattern_13 3.76767e-06	Absent
Tfec	Pattern Name Modisco Significance metacluster_1/pattern_12 0.00181908	Absent
Hes1	Pattern Name Modisco Significance metacluster_1/pattern_12 0.0514347	Absent
Usf2	Pattern Name Modisco Significance metacluster_1/pattern_5 0.0495264 metacluster_1/pattern_6 0.000106783 metacluster_1/pattern_12 0.00272237 metacluster_1/pattern_14 0.032577499999999995 metacluster_1/pattern_15 0.028185200000000004	Absent
Ascl1	Pattern Name Modisco Significance metacluster_1/pattern_19 0.0345565	Absent
Ascl2	Pattern Name Modisco Significance metacluster_1/pattern_18 0.04648819999999999 metacluster_1/pattern_19 0.0345565	Absent
Foxo1	Pattern Name Modisco Significance metacluster_1/pattern_18 0.0506707	Absent
Srebf1	Pattern Name Modisco Significance metacluster_1/pattern_12 0.0461214	Absent
Batf	Pattern Name Modisco Significance metacluster_1/pattern_13 0.0358869	Absent
Nfe2	Pattern Name Modisco Significance metacluster_1/pattern_13 0.00915931	Absent
Nhlh2	Pattern Name Modisco Significance metacluster_1/pattern_19 0.0489541	Absent
Runx1	Pattern Name Modisco Significance metacluster_1/pattern_16 0.007559000000000001	Absent
Xbp1	Pattern Name Modisco Significance metacluster_1/pattern_12 0.030501999999999998	Absent
Junb	Pattern Name Modisco Significance metacluster_1/pattern_13 0.038427499999999996	Absent
Bhlha15	Pattern Name Modisco Significance metacluster_1/pattern_18 0.04648819999999999	Absent
Zfx	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0253184 metacluster_1/pattern_5 0.00162247 metacluster_1/pattern_6 0.00689624 metacluster_1/pattern_14 0.0510112 metacluster_1/pattern_15 0.000706535	Absent
Irf7	Pattern Name Modisco Significance metacluster_1/pattern_7 0.000905326	Absent
Rfx6	Pattern Name Modisco Significance metacluster_1/pattern_10 0.000347872	Absent
Ptf1a	Pattern Name Modisco Significance metacluster_1/pattern_18 0.0488144	Absent
Bach1	Pattern Name Modisco Significance metacluster_1/pattern_13 0.00883295	Absent
Myog	Pattern Name Modisco Significance metacluster_1/pattern_18 0.0349068	Absent
Fosl1	Pattern Name Modisco Significance metacluster_1/pattern_13 1.3721799999999998e-06	Absent
Zbtb33	Pattern Name Modisco Significance metacluster_1/pattern_15 7.44596e-06	Absent
Zbtb17	Pattern Name Modisco Significance metacluster_1/pattern_2 0.00583229 metacluster_1/pattern_5 0.00944341 metacluster_1/pattern_14 0.00657499	Absent
Fos	Pattern Name Modisco Significance metacluster_1/pattern_13 2.50357e-06	Absent
Maz	Pattern Name Modisco Significance metacluster_1/pattern_5 0.035930800000000006	Absent
Mlxip	Pattern Name Modisco Significance metacluster_1/pattern_12 0.057183300000000006	Absent
Zscan10	Pattern Name Modisco Significance metacluster_1/pattern_7 0.0102596	Absent
Sp5	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0232044	Absent
Stat2	Pattern Name Modisco Significance metacluster_1/pattern_7 0.00126374	Absent
Zbtb1	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0463942	Absent
Tfeb	Pattern Name Modisco Significance metacluster_1/pattern_12 0.000826127	Absent
Stat1	Pattern Name Modisco Significance metacluster_1/pattern_7 0.00189095	Absent
Max	Pattern Name Modisco Significance metacluster_1/pattern_12 0.058010400000000004	Absent
Mycn	Pattern Name Modisco Significance metacluster_1/pattern_12 0.0496236	Absent
Arnt	Pattern Name Modisco Significance metacluster_1/pattern_12 0.051823400000000006	Absent
Rfx4	Pattern Name Modisco Significance metacluster_1/pattern_10 2.4632800000000002e-05	Absent
Runx3	Pattern Name Modisco Significance metacluster_1/pattern_16 0.00466792 metacluster_1/pattern_17 0.032691200000000004	Absent
Runx2	Pattern Name Modisco Significance metacluster_1/pattern_16 0.00341127	Absent
Zfp281	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0253184	Absent
Neurod2	Pattern Name Modisco Significance metacluster_1/pattern_18 0.04648819999999999	Absent
Creb3l2	Pattern Name Modisco Significance metacluster_1/pattern_12 0.0236157	Absent
Myc	Pattern Name Modisco Significance metacluster_1/pattern_12 0.0188117	Absent
Zfp740	Pattern Name Modisco Significance metacluster_1/pattern_2 0.039363300000000004	Absent
Wt1	Pattern Name Modisco Significance metacluster_1/pattern_5 0.0331966 metacluster_1/pattern_14 0.034043199999999996	Absent
Sox2	Pattern Name Modisco Significance metacluster_1/pattern_10 0.0552174	Absent
Npas2	Pattern Name Modisco Significance metacluster_1/pattern_12 0.00162443	Absent
Snai2	Pattern Name Modisco Significance metacluster_1/pattern_19 0.0345565	Absent
Rfx7	Pattern Name Modisco Significance metacluster_1/pattern_10 0.000233747	Absent
Jun	Pattern Name Modisco Significance metacluster_1/pattern_6 0.040832099999999996 metacluster_1/pattern_13 0.051718499999999994	Absent
Pou2f1	Pattern Name Modisco Significance metacluster_1/pattern_9 0.0079932	Absent
Nfe2l2	Pattern Name Modisco Significance metacluster_1/pattern_13 0.0106471	Absent
Rfx2	Pattern Name Modisco Significance metacluster_1/pattern_10 0.00571393	Absent
Neurod1	Pattern Name Modisco Significance metacluster_1/pattern_18 0.057993499999999996	Absent
Clock	Pattern Name Modisco Significance metacluster_1/pattern_12 0.0578279	Absent
Rfx1	Pattern Name Modisco Significance metacluster_1/pattern_5 0.00378756 metacluster_1/pattern_10 6.43853e-11 metacluster_1/pattern_14 0.013937200000000002	Absent
Tfe3	Pattern Name Modisco Significance metacluster_1/pattern_12 0.0021774999999999997	Absent
Hlf	Pattern Name Modisco Significance metacluster_1/pattern_12 0.0378416	Absent
Usf1	Pattern Name Modisco Significance metacluster_1/pattern_12 0.00626004	Absent
Olig2	Pattern Name Modisco Significance metacluster_1/pattern_18 0.047368	Absent
E2f1	Pattern Name Modisco Significance metacluster_1/pattern_2 0.010421399999999999	Absent
Sall4	Pattern Name Modisco Significance metacluster_1/pattern_2 0.059148	Absent
Lyl1	Pattern Name Modisco Significance metacluster_1/pattern_18 4.34358e-06	Absent
Cbfb	Pattern Name Modisco Significance metacluster_1/pattern_16 0.00744434	Absent
Atf3	Pattern Name Modisco Significance metacluster_1/pattern_6 0.0157136 metacluster_1/pattern_13 8.33935e-06	Absent
Mitf	Pattern Name Modisco Significance metacluster_1/pattern_12 0.00131864	Absent
Tal1	Pattern Name Modisco Significance metacluster_1/pattern_18 0.047368	Absent
Dbp	Pattern Name Modisco Significance metacluster_1/pattern_12 0.054104700000000006	Absent
Tcf3	Pattern Name Modisco Significance metacluster_1/pattern_18 0.04648819999999999 metacluster_1/pattern_19 0.0383071	Absent
Tcf4	Pattern Name Modisco Significance metacluster_1/pattern_19 0.0345565	Absent
Tcfl5	Pattern Name Modisco Significance metacluster_1/pattern_12 0.0108772	Absent
Arntl	Pattern Name Modisco Significance metacluster_1/pattern_12 0.00273108	Absent
Myf6	Pattern Name Modisco Significance metacluster_1/pattern_19 0.0345565	Absent
Jund	Pattern Name Modisco Significance metacluster_1/pattern_13 0.00883295	Absent
Fosl2	Pattern Name Modisco Significance metacluster_1/pattern_6 0.0178065 metacluster_1/pattern_13 0.000851045	Absent
Egr3	Pattern Name Modisco Significance metacluster_1/pattern_2 0.040417	Absent
Bhlhe41	Pattern Name Modisco Significance metacluster_1/pattern_12 0.0266291	Absent
Srebf2	Pattern Name Modisco Significance metacluster_1/pattern_12 0.00650212	Absent
Egr2	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0295814	Absent
Bach2	Pattern Name Modisco Significance metacluster_1/pattern_13 0.00480557	Absent
Mlx	Pattern Name Modisco Significance metacluster_1/pattern_12 0.018999099999999998	Absent

Unique Homer TFs: #1

TF Name	Modisco	Homer
Nanog	Absent	Pattern Name Homer Significance motif14.motif 0.0337467